RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 ZRANB3Q5FWF4 1079 aa15.68■□□□□ 0.1
CLN3-246ENST00000636228 ZNF789Q5FWF6 425 aa15.68■□□□□ 0.1
CLN3-246ENST00000636228 SNX20Q7Z614 316 aa15.68■□□□□ 0.1
CLN3-246ENST00000636228 CDKL3Q8IVW4 592 aaPredicted RBP15.68■□□□□ 0.1
CLN3-246ENST00000636228 CLDN19Q8N6F1 224 aa15.68■□□□□ 0.1
CLN3-246ENST00000636228 EFCAB3Q8N7B9 438 aa15.68■□□□□ 0.1
CLN3-246ENST00000636228 OR52E1Q8NGJ3 308 aa15.68■□□□□ 0.1
CLN3-246ENST00000636228 ADAMTS17Q8TE56 1095 aa15.68■□□□□ 0.1
CLN3-246ENST00000636228 ULK4Q96C45 1275 aa15.68■□□□□ 0.1
CLN3-246ENST00000636228 DNAJC1Q96KC8 554 aaKnown RBP15.68■□□□□ 0.1
CLN3-246ENST00000636228 OSBPL8Q9BZF1 889 aa15.68■□□□□ 0.1
CLN3-246ENST00000636228 OR52A5Q9H2C5 316 aa15.68■□□□□ 0.1
CLN3-246ENST00000636228 COG4Q9H9E3 785 aa15.68■□□□□ 0.1
CLN3-246ENST00000636228 ACTR5Q9H9F9 607 aaPredicted RBP15.68■□□□□ 0.1
CLN3-246ENST00000636228 MLXIPLQ9NP71 852 aa15.68■□□□□ 0.1
CLN3-246ENST00000636228 LATS2Q9NRM7 1088 aa15.68■□□□□ 0.1
CLN3-246ENST00000636228 C1GALT1Q9NS00 363 aa15.68■□□□□ 0.1
CLN3-246ENST00000636228 PCMTD2Q9NV79 361 aa15.68■□□□□ 0.1
CLN3-246ENST00000636228 TCFL5Q9UL49 500 aa15.68■□□□□ 0.1
CLN3-246ENST00000636228 PCDHA3Q9Y5H8 950 aa15.68■□□□□ 0.1
CLN3-246ENST00000636228 HEBP2Q9Y5Z4 205 aa15.68■□□□□ 0.1
CLN3-246ENST00000636228 NBASA2RRP1 2371 aa15.68■□□□□ 0.1
CLN3-246ENST00000636228 KLHL33A6NCF5 533 aa15.67■□□□□ 0.1
CLN3-246ENST00000636228 PJA2O43164 708 aa15.67■□□□□ 0.1
CLN3-246ENST00000636228 LDB2O43679 373 aa15.67■□□□□ 0.1
CLN3-246ENST00000636228 RAB40ALP0C0E4 278 aa15.67■□□□□ 0.1
CLN3-246ENST00000636228 PYGMP11217 842 aa15.67■□□□□ 0.1
CLN3-246ENST00000636228 CYP2A7P20853 494 aa15.67■□□□□ 0.1
CLN3-246ENST00000636228 CTNNA1P35221 906 aaKnown RBP15.67■□□□□ 0.1
CLN3-246ENST00000636228 RAPSNQ13702 412 aa15.67■□□□□ 0.1
CLN3-246ENST00000636228 SPA17Q15506 151 aa15.67■□□□□ 0.1
CLN3-246ENST00000636228 ZNF658BQ4V348 819 aaPredicted RBP15.67■□□□□ 0.1
CLN3-246ENST00000636228 PRR30Q53SZ7 412 aaPredicted RBP15.67■□□□□ 0.1
CLN3-246ENST00000636228 TAS2R42Q7RTR8 314 aa15.67■□□□□ 0.1
CLN3-246ENST00000636228 TRIM73Q86UV7 250 aa15.67■□□□□ 0.1
CLN3-246ENST00000636228 SERPINA9Q86WD7 417 aa15.67■□□□□ 0.1
CLN3-246ENST00000636228 CARFQ8N187 725 aa15.67■□□□□ 0.1
CLN3-246ENST00000636228 FDCSPQ8NFU4 85 aa15.67■□□□□ 0.1
CLN3-246ENST00000636228 LRFN5Q96NI6 719 aa15.67■□□□□ 0.1
CLN3-246ENST00000636228 TRAPPC9Q96Q05 1148 aa15.67■□□□□ 0.1
CLN3-246ENST00000636228 HGH1Q9BTY7 390 aa15.67■□□□□ 0.1
CLN3-246ENST00000636228 NUDT9Q9BW91 350 aa15.67■□□□□ 0.1
CLN3-246ENST00000636228 NLNQ9BYT8 704 aa15.67■□□□□ 0.1
CLN3-246ENST00000636228 FANCEQ9HB96 536 aa15.67■□□□□ 0.1
CLN3-246ENST00000636228 LRRC4CQ9HCJ2 640 aa15.67■□□□□ 0.1
CLN3-246ENST00000636228 PIH1D1Q9NWS0 290 aaKnown RBP15.67■□□□□ 0.1
CLN3-246ENST00000636228 ZDHHC3Q9NYG2 299 aa15.67■□□□□ 0.1
CLN3-246ENST00000636228 PCDHGA9Q9Y5G4 932 aaKnown RBP15.67■□□□□ 0.1
CLN3-246ENST00000636228 C17orf113A0A1B0GUU1 675 aa15.66■□□□□ 0.1
CLN3-246ENST00000636228 CCDC78A2IDD5 438 aa15.66■□□□□ 0.1
CLN3-246ENST00000636228 CFAP99D6REC4 459 aa15.66■□□□□ 0.1
CLN3-246ENST00000636228 IFRD1O00458 451 aaPredicted RBP15.66■□□□□ 0.1
CLN3-246ENST00000636228 STK10O94804 968 aaKnown RBP15.66■□□□□ 0.1
CLN3-246ENST00000636228 TMEM63AO94886 807 aa15.66■□□□□ 0.1
CLN3-246ENST00000636228 COPS2P61201 443 aa15.66■□□□□ 0.1
CLN3-246ENST00000636228 BRD3Q15059 726 aa15.66■□□□□ 0.1
CLN3-246ENST00000636228 FAM198BQ6UWH4 519 aa15.66■□□□□ 0.1
CLN3-246ENST00000636228 NAPRTQ6XQN6 538 aa15.66■□□□□ 0.1
CLN3-246ENST00000636228 CDHR3Q6ZTQ4 885 aa15.66■□□□□ 0.1
CLN3-246ENST00000636228 AMIGO1Q86WK6 493 aa15.66■□□□□ 0.1
CLN3-246ENST00000636228 SYTL1Q8IYJ3 562 aa15.66■□□□□ 0.1
CLN3-246ENST00000636228 ADGRF3Q8IZF5 1079 aa15.66■□□□□ 0.1
CLN3-246ENST00000636228 TAB3Q8N5C8 712 aaPredicted RBP15.66■□□□□ 0.1
CLN3-246ENST00000636228 ZBTB2Q8N680 514 aa15.66■□□□□ 0.1
CLN3-246ENST00000636228 SPATA13Q96N96 652 aa15.66■□□□□ 0.1
CLN3-246ENST00000636228 FERMT1Q9BQL6 677 aa15.66■□□□□ 0.1
CLN3-246ENST00000636228 SLC7A5P2Q9GIP4 190 aa15.66■□□□□ 0.1
CLN3-246ENST00000636228 SERTAD3Q9UJW9 196 aa15.66■□□□□ 0.1
CLN3-246ENST00000636228 MAP4K5Q9Y4K4 846 aa15.66■□□□□ 0.1
CLN3-246ENST00000636228 ZNF749O43361 778 aa15.65■□□□□ 0.1
CLN3-246ENST00000636228 HCRTR1O43613 425 aa15.65■□□□□ 0.1
CLN3-246ENST00000636228 AGFG2O95081 481 aa15.65■□□□□ 0.1
CLN3-246ENST00000636228 CTSBP07858 339 aa15.65■□□□□ 0.1
CLN3-246ENST00000636228 PTMSP20962 102 aa15.65■□□□□ 0.1
CLN3-246ENST00000636228 ACRV1P26436 265 aa15.65■□□□□ 0.1
CLN3-246ENST00000636228 HADHAP40939 763 aa15.65■□□□□ 0.1
CLN3-246ENST00000636228 NAP1L1P55209 391 aaKnown RBP15.65■□□□□ 0.1
CLN3-246ENST00000636228 SKOR2Q2VWA4 1001 aaPredicted RBP15.65■□□□□ 0.1
CLN3-246ENST00000636228 C4orf17Q53FE4 359 aa15.65■□□□□ 0.1
CLN3-246ENST00000636228 PAPD7Q5XG87 772 aaKnown RBP15.65■□□□□ 0.1
CLN3-246ENST00000636228 PIANPQ8IYJ0 282 aa15.65■□□□□ 0.1
CLN3-246ENST00000636228 CCDC170Q8IYT3 715 aa15.65■□□□□ 0.1
CLN3-246ENST00000636228 ALG3Q92685 438 aa15.65■□□□□ 0.1
CLN3-246ENST00000636228 TFGQ92734 400 aaPredicted RBP15.65■□□□□ 0.1
CLN3-246ENST00000636228 PITPNM3Q9BZ71 974 aa15.65■□□□□ 0.1
CLN3-246ENST00000636228 TRIM5Q9C035 493 aa15.65■□□□□ 0.1
CLN3-246ENST00000636228 TFB2MQ9H5Q4 396 aaKnown RBP15.65■□□□□ 0.1
CLN3-246ENST00000636228 ARNT2Q9HBZ2 717 aa15.65■□□□□ 0.1
CLN3-246ENST00000636228 FAM60AQ9NP50 221 aa15.65■□□□□ 0.1
CLN3-246ENST00000636228 ACTR10Q9NZ32 417 aa15.65■□□□□ 0.1
CLN3-246ENST00000636228 PRSS21Q9Y6M0 314 aa15.65■□□□□ 0.1
CLN3-246ENST00000636228 NBPF19A0A087WUL8 3843 aa15.64■□□□□ 0.09
CLN3-246ENST00000636228 IGLV3-16A0A075B6K0 115 aa15.64■□□□□ 0.09
CLN3-246ENST00000636228 TRBV5-4A0A0C4DH59 114 aa15.64■□□□□ 0.09
CLN3-246ENST00000636228 SOWAHDA6NJG2 315 aa15.64■□□□□ 0.09
CLN3-246ENST00000636228 C2orf74A8MZ97 194 aa15.64■□□□□ 0.09
CLN3-246ENST00000636228 E7EQ34 232 aa15.64■□□□□ 0.09
CLN3-246ENST00000636228 SEMA7AO75326 666 aa15.64■□□□□ 0.09
CLN3-246ENST00000636228 CEACAM4O75871 244 aa15.64■□□□□ 0.09
CLN3-246ENST00000636228 SORBS2O94875 1100 aaKnown RBP15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms