RNA–Protein interactions for RNA: ENST00000612946.4

TTC28-208, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TTC28, Length 11,274 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-208ENST00000612946 PHRF1Q9P1Y6 1649 aaKnown RBP8.65□□□□□ -1.02
TTC28-208ENST00000612946 BNIP3LO60238 219 aa8.65□□□□□ -1.02
TTC28-208ENST00000612946 PRAMEF2O60811 474 aa8.65□□□□□ -1.02
TTC28-208ENST00000612946 NR2F1P10589 423 aa8.65□□□□□ -1.02
TTC28-208ENST00000612946 PPATQ06203 517 aa8.65□□□□□ -1.02
TTC28-208ENST00000612946 MIB1Q86YT6 1006 aa8.65□□□□□ -1.02
TTC28-208ENST00000612946 VWA5B2Q8N398 1253 aa8.65□□□□□ -1.02
TTC28-208ENST00000612946 OR13J1Q8NGT2 312 aa8.65□□□□□ -1.02
TTC28-208ENST00000612946 RBM22Q9NW64 420 aaKnown RBP eCLIP8.65□□□□□ -1.02
TTC28-208ENST00000612946 RAMP2O60895 175 aa8.65□□□□□ -1.02
TTC28-208ENST00000612946 CCNDBP1O95273 360 aa8.65□□□□□ -1.02
TTC28-208ENST00000612946 PRKAR1BP31321 381 aa8.65□□□□□ -1.02
TTC28-208ENST00000612946 FLI1Q01543 452 aaPredicted RBP8.65□□□□□ -1.02
TTC28-208ENST00000612946 INTS6LQ5JSJ4 861 aaKnown RBP8.65□□□□□ -1.02
TTC28-208ENST00000612946 UNC93AQ86WB7 457 aa8.65□□□□□ -1.02
TTC28-208ENST00000612946 KCNN1Q92952 543 aa8.65□□□□□ -1.02
TTC28-208ENST00000612946 TBATAQ96M53 351 aa8.65□□□□□ -1.02
TTC28-208ENST00000612946 PNMA5Q96PV4 448 aa8.65□□□□□ -1.02
TTC28-208ENST00000612946 ZBTB26Q9HCK0 441 aa8.65□□□□□ -1.02
TTC28-208ENST00000612946 NKIRAS2Q9NYR9 191 aa8.65□□□□□ -1.02
TTC28-208ENST00000612946 UXTQ9UBK9 157 aaPredicted RBP8.65□□□□□ -1.02
TTC28-208ENST00000612946 TMEM59LQ9UK28 342 aa8.65□□□□□ -1.02
TTC28-208ENST00000612946 ZNRF3Q9ULT6 936 aa8.65□□□□□ -1.02
TTC28-208ENST00000612946 NPHP4O75161 1426 aaPredicted RBP8.65□□□□□ -1.03
TTC28-208ENST00000612946 FPR1P21462 350 aa8.65□□□□□ -1.03
TTC28-208ENST00000612946 TCEA1P23193 301 aaKnown RBP8.65□□□□□ -1.03
TTC28-208ENST00000612946 EXOC3L2Q2M3D2 409 aa8.65□□□□□ -1.03
TTC28-208ENST00000612946 CBWD3Q5JTY5 395 aa8.65□□□□□ -1.03
TTC28-208ENST00000612946 CBWD5Q5RIA9 395 aa8.65□□□□□ -1.03
TTC28-208ENST00000612946 UNC5AQ6ZN44 842 aa8.65□□□□□ -1.03
TTC28-208ENST00000612946 PTAR1Q7Z6K3 402 aaPredicted RBP8.65□□□□□ -1.03
TTC28-208ENST00000612946 ZC3H7AQ8IWR0 971 aaKnown RBP8.65□□□□□ -1.03
TTC28-208ENST00000612946 Q8N402 240 aa8.65□□□□□ -1.03
TTC28-208ENST00000612946 SCRN2Q96FV2 425 aa8.65□□□□□ -1.03
TTC28-208ENST00000612946 ZDHHC15Q96MV8 337 aa8.65□□□□□ -1.03
TTC28-208ENST00000612946 C5orf51A6NDU8 294 aa8.65□□□□□ -1.03
TTC28-208ENST00000612946 LYPLA1O75608 230 aaPredicted RBP8.65□□□□□ -1.03
TTC28-208ENST00000612946 SLC2A5P22732 501 aa8.65□□□□□ -1.03
TTC28-208ENST00000612946 PCDH1Q08174 1060 aa8.65□□□□□ -1.03
TTC28-208ENST00000612946 IFI44LQ53G44 452 aa8.65□□□□□ -1.03
TTC28-208ENST00000612946 TOR3AQ9H497 397 aa8.65□□□□□ -1.03
TTC28-208ENST00000612946 ABCD2Q9UBJ2 740 aa8.65□□□□□ -1.03
TTC28-208ENST00000612946 EXOSC1Q9Y3B2 195 aaKnown RBP8.65□□□□□ -1.03
TTC28-208ENST00000612946 LRRC14BA6NHZ5 514 aa8.65□□□□□ -1.03
TTC28-208ENST00000612946 HTRA2O43464 458 aaPredicted RBP8.65□□□□□ -1.03
TTC28-208ENST00000612946 NIPAL4Q0D2K0 466 aa8.65□□□□□ -1.03
TTC28-208ENST00000612946 SEC23BQ15437 767 aa8.65□□□□□ -1.03
TTC28-208ENST00000612946 ABCA11PQ4W5N1 156 aa8.65□□□□□ -1.03
TTC28-208ENST00000612946 C15orf52Q6ZUT6 534 aaKnown RBP8.65□□□□□ -1.03
TTC28-208ENST00000612946 PAQR7Q86WK9 346 aa8.65□□□□□ -1.03
TTC28-208ENST00000612946 ARMC10Q8N2F6 343 aa8.65□□□□□ -1.03
TTC28-208ENST00000612946 COQ10AQ96MF6 247 aa8.65□□□□□ -1.03
TTC28-208ENST00000612946 OR5B12Q96R08 314 aa8.65□□□□□ -1.03
TTC28-208ENST00000612946 ISCA1Q9BUE6 129 aa8.65□□□□□ -1.03
TTC28-208ENST00000612946 MRTO4Q9UKD2 239 aaKnown RBP8.65□□□□□ -1.03
TTC28-208ENST00000612946 LTFP02788 710 aa8.64□□□□□ -1.03
TTC28-208ENST00000612946 ERVK-8P63133 956 aa8.64□□□□□ -1.03
TTC28-208ENST00000612946 NFATC3Q12968 1075 aa8.64□□□□□ -1.03
TTC28-208ENST00000612946 PUS10Q3MIT2 529 aaKnown RBP8.64□□□□□ -1.03
TTC28-208ENST00000612946 ASRGL1Q7L266 308 aa8.64□□□□□ -1.03
TTC28-208ENST00000612946 FBXO33Q7Z6M2 555 aa8.64□□□□□ -1.03
TTC28-208ENST00000612946 JAZF1Q86VZ6 243 aa8.64□□□□□ -1.03
TTC28-208ENST00000612946 LDHDQ86WU2 507 aa8.64□□□□□ -1.03
TTC28-208ENST00000612946 ZDHHC21Q8IVQ6 265 aa8.64□□□□□ -1.03
TTC28-208ENST00000612946 C4orf19Q8IY42 314 aa8.64□□□□□ -1.03
TTC28-208ENST00000612946 TWIST2Q8WVJ9 160 aa8.64□□□□□ -1.03
TTC28-208ENST00000612946 SEMA4DQ92854 862 aa8.64□□□□□ -1.03
TTC28-208ENST00000612946 SLC38A4Q969I6 547 aa8.64□□□□□ -1.03
TTC28-208ENST00000612946 LRTM1Q9HBL6 345 aa8.64□□□□□ -1.03
TTC28-208ENST00000612946 GPATCH2Q9NW75 528 aa8.64□□□□□ -1.03
TTC28-208ENST00000612946 CA5BQ9Y2D0 317 aa8.64□□□□□ -1.03
TTC28-208ENST00000612946 LOC100130705A0A1B0GUX0 176 aa8.64□□□□□ -1.03
TTC28-208ENST00000612946 SHOXO15266 292 aa8.64□□□□□ -1.03
TTC28-208ENST00000612946 YKT6O15498 198 aa8.64□□□□□ -1.03
TTC28-208ENST00000612946 HSPA12AO43301 675 aa8.64□□□□□ -1.03
TTC28-208ENST00000612946 RAB3BP20337 219 aa8.64□□□□□ -1.03
TTC28-208ENST00000612946 RBBP4Q09028 425 aa8.64□□□□□ -1.03
TTC28-208ENST00000612946 RASGEF1BQ0VAM2 473 aa8.64□□□□□ -1.03
TTC28-208ENST00000612946 ZNF484Q5JVG2 852 aa8.64□□□□□ -1.03
TTC28-208ENST00000612946 CPB2Q96IY4 423 aa8.64□□□□□ -1.03
TTC28-208ENST00000612946 ZNF641Q96N77 438 aaPredicted RBP8.64□□□□□ -1.03
TTC28-208ENST00000612946 MAGIXQ9H6Y5 334 aa8.64□□□□□ -1.03
TTC28-208ENST00000612946 PNPOQ9NVS9 261 aa8.64□□□□□ -1.03
TTC28-208ENST00000612946 PRRC2BQ5JSZ5 2229 aaKnown RBP8.64□□□□□ -1.03
TTC28-208ENST00000612946 TCP10L2B9ZVM9 353 aa8.64□□□□□ -1.03
TTC28-208ENST00000612946 SGCEO43556 437 aa8.64□□□□□ -1.03
TTC28-208ENST00000612946 FGBP02675 491 aa8.64□□□□□ -1.03
TTC28-208ENST00000612946 ZDHHC11BP0C7U3 371 aa8.64□□□□□ -1.03
TTC28-208ENST00000612946 GTF2F2P13984 249 aa8.64□□□□□ -1.03
TTC28-208ENST00000612946 DSTNP60981 165 aa8.64□□□□□ -1.03
TTC28-208ENST00000612946 CHRDL2Q6WN34 429 aa8.64□□□□□ -1.03
TTC28-208ENST00000612946 ADGRF2Q8IZF7 708 aa8.64□□□□□ -1.03
TTC28-208ENST00000612946 HAVCR2Q8TDQ0 301 aa8.64□□□□□ -1.03
TTC28-208ENST00000612946 UCK2Q9BZX2 261 aa8.64□□□□□ -1.03
TTC28-208ENST00000612946 MTFR1LQ9H019 292 aa8.64□□□□□ -1.03
TTC28-208ENST00000612946 POPDC2Q9HBU9 364 aa8.64□□□□□ -1.03
TTC28-208ENST00000612946 XPNPEP1Q9NQW7 623 aa8.64□□□□□ -1.03
TTC28-208ENST00000612946 TNFRSF10DQ9UBN6 386 aa8.64□□□□□ -1.03
TTC28-208ENST00000612946 C14orf166Q9Y224 244 aaKnown RBP8.64□□□□□ -1.03
TTC28-208ENST00000612946 NRG3P56975 720 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms