RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 SENP1Q9P0U3 644 aa11.84□□□□□ -0.51
SHKBP1-213ENST00000597325 ATXN10Q9UBB4 475 aa11.84□□□□□ -0.51
SHKBP1-213ENST00000597325 TRMT6Q9UJA5 497 aaKnown RBP11.84□□□□□ -0.51
SHKBP1-213ENST00000597325 MOSPD1Q9UJG1 213 aa11.84□□□□□ -0.51
SHKBP1-213ENST00000597325 TMEM98Q9Y2Y6 226 aa11.84□□□□□ -0.51
SHKBP1-213ENST00000597325 VWA7Q9Y334 891 aa11.84□□□□□ -0.51
SHKBP1-213ENST00000597325 OAS3Q9Y6K5 1087 aaKnown RBP11.84□□□□□ -0.51
SHKBP1-213ENST00000597325 POLQO75417 2590 aa11.83□□□□□ -0.52
SHKBP1-213ENST00000597325 NF1P21359 2839 aa11.83□□□□□ -0.52
SHKBP1-213ENST00000597325 TP53BP1Q12888 1972 aaPredicted RBP11.83□□□□□ -0.52
SHKBP1-213ENST00000597325 TPP1O14773 563 aa11.83□□□□□ -0.52
SHKBP1-213ENST00000597325 MAGEC1O60732 1142 aa11.83□□□□□ -0.52
SHKBP1-213ENST00000597325 NIPSNAP2O75323 286 aa11.83□□□□□ -0.52
SHKBP1-213ENST00000597325 LDOC1O95751 146 aaPredicted RBP11.83□□□□□ -0.52
SHKBP1-213ENST00000597325 POU3F2P20265 443 aaPredicted RBP11.83□□□□□ -0.52
SHKBP1-213ENST00000597325 FDXRP22570 491 aa11.83□□□□□ -0.52
SHKBP1-213ENST00000597325 CRABP2P29373 138 aa11.83□□□□□ -0.52
SHKBP1-213ENST00000597325 PBLDP30039 288 aaPredicted RBP11.83□□□□□ -0.52
SHKBP1-213ENST00000597325 PRLHRP49683 370 aa11.83□□□□□ -0.52
SHKBP1-213ENST00000597325 PFN3P60673 137 aa11.83□□□□□ -0.52
SHKBP1-213ENST00000597325 RAB10P61026 200 aa11.83□□□□□ -0.52
SHKBP1-213ENST00000597325 RACK1P63244 317 aaKnown RBP11.83□□□□□ -0.52
SHKBP1-213ENST00000597325 PDE1CQ14123 709 aaPredicted RBP11.83□□□□□ -0.52
SHKBP1-213ENST00000597325 TTLL9Q3SXZ7 439 aa11.83□□□□□ -0.52
SHKBP1-213ENST00000597325 LINC00303Q3SY05 128 aa11.83□□□□□ -0.52
SHKBP1-213ENST00000597325 BCL7AQ4VC05 210 aa11.83□□□□□ -0.52
SHKBP1-213ENST00000597325 SYTL3Q4VX76 610 aa11.83□□□□□ -0.52
SHKBP1-213ENST00000597325 AGBL2Q5U5Z8 902 aa11.83□□□□□ -0.52
SHKBP1-213ENST00000597325 HIST2H2BCQ6DN03 193 aa11.83□□□□□ -0.52
SHKBP1-213ENST00000597325 CRTC3Q6UUV7 619 aa11.83□□□□□ -0.52
SHKBP1-213ENST00000597325 KDM7AQ6ZMT4 941 aa11.83□□□□□ -0.52
SHKBP1-213ENST00000597325 Q6ZSR6 202 aa11.83□□□□□ -0.52
SHKBP1-213ENST00000597325 CCDC91Q7Z6B0 441 aa11.83□□□□□ -0.52
SHKBP1-213ENST00000597325 ABI3BPQ7Z7G0 1075 aa11.83□□□□□ -0.52
SHKBP1-213ENST00000597325 LRRTM4Q86VH4 590 aa11.83□□□□□ -0.52
SHKBP1-213ENST00000597325 SRRM1Q8IYB3 904 aaKnown RBP11.83□□□□□ -0.52
SHKBP1-213ENST00000597325 CYP4X1Q8N118 509 aa11.83□□□□□ -0.52
SHKBP1-213ENST00000597325 SKA1Q96BD8 255 aa11.83□□□□□ -0.52
SHKBP1-213ENST00000597325 FAM136AQ96C01 138 aa11.83□□□□□ -0.52
SHKBP1-213ENST00000597325 SGF29Q96ES7 293 aa11.83□□□□□ -0.52
SHKBP1-213ENST00000597325 CCDC97Q96F63 343 aaPredicted RBP11.83□□□□□ -0.52
SHKBP1-213ENST00000597325 KLHDC7BQ96G42 594 aa11.83□□□□□ -0.52
SHKBP1-213ENST00000597325 CABS1Q96KC9 395 aa11.83□□□□□ -0.52
SHKBP1-213ENST00000597325 BMFQ96LC9 184 aa11.83□□□□□ -0.52
SHKBP1-213ENST00000597325 TSNARE1Q96NA8 513 aa11.83□□□□□ -0.52
SHKBP1-213ENST00000597325 SMC6Q96SB8 1091 aa11.83□□□□□ -0.52
SHKBP1-213ENST00000597325 SH3GL2Q99962 352 aa11.83□□□□□ -0.52
SHKBP1-213ENST00000597325 LGR4Q9BXB1 951 aa11.83□□□□□ -0.52
SHKBP1-213ENST00000597325 RMI1Q9H9A7 625 aa11.83□□□□□ -0.52
SHKBP1-213ENST00000597325 POPDC3Q9HBV1 291 aa11.83□□□□□ -0.52
SHKBP1-213ENST00000597325 MED4Q9NPJ6 270 aa11.83□□□□□ -0.52
SHKBP1-213ENST00000597325 KLQ9UEF7 1012 aa11.83□□□□□ -0.52
SHKBP1-213ENST00000597325 TLK1Q9UKI8 766 aa11.83□□□□□ -0.52
SHKBP1-213ENST00000597325 CLCA2Q9UQC9 943 aa11.83□□□□□ -0.52
SHKBP1-213ENST00000597325 PRSS21Q9Y6M0 314 aa11.83□□□□□ -0.52
SHKBP1-213ENST00000597325 AKAP9Q99996 3911 aa11.83□□□□□ -0.52
SHKBP1-213ENST00000597325 ADGRG4Q8IZF6 3080 aa11.83□□□□□ -0.52
SHKBP1-213ENST00000597325 ARID1BQ8NFD5 2236 aaPredicted RBP11.82□□□□□ -0.52
SHKBP1-213ENST00000597325 A0A087X1B8 175 aa11.82□□□□□ -0.52
SHKBP1-213ENST00000597325 A0A1B0GTQ1 180 aa11.82□□□□□ -0.52
SHKBP1-213ENST00000597325 HMX2A2RU54 273 aa11.82□□□□□ -0.52
SHKBP1-213ENST00000597325 HMGB1P1B2RPK0 211 aaPredicted RBP11.82□□□□□ -0.52
SHKBP1-213ENST00000597325 KPNA5O15131 536 aa11.82□□□□□ -0.52
SHKBP1-213ENST00000597325 MPOP05164 745 aa11.82□□□□□ -0.52
SHKBP1-213ENST00000597325 GSTM1P09488 218 aa11.82□□□□□ -0.52
SHKBP1-213ENST00000597325 THEGLP0DJG4 465 aa11.82□□□□□ -0.52
SHKBP1-213ENST00000597325 ZNF8P17098 575 aaPredicted RBP11.82□□□□□ -0.52
SHKBP1-213ENST00000597325 CD38P28907 300 aa11.82□□□□□ -0.52
SHKBP1-213ENST00000597325 SKIV2L2P42285 1042 aaKnown RBP11.82□□□□□ -0.52
SHKBP1-213ENST00000597325 CTSCP53634 463 aa11.82□□□□□ -0.52
SHKBP1-213ENST00000597325 CDKN2DP55273 166 aa11.82□□□□□ -0.52
SHKBP1-213ENST00000597325 TAS2R39P59534 338 aa11.82□□□□□ -0.52
SHKBP1-213ENST00000597325 ERVPABLB-1P60509 514 aa11.82□□□□□ -0.52
SHKBP1-213ENST00000597325 INSM1Q01101 510 aaPredicted RBP11.82□□□□□ -0.52
SHKBP1-213ENST00000597325 GSTM4Q03013 218 aa11.82□□□□□ -0.52
SHKBP1-213ENST00000597325 TLE1Q04724 770 aa11.82□□□□□ -0.52
SHKBP1-213ENST00000597325 OVGP1Q12889 678 aa11.82□□□□□ -0.52
SHKBP1-213ENST00000597325 NUMA1Q14980 2115 aa11.82□□□□□ -0.52
SHKBP1-213ENST00000597325 TEAD4Q15561 434 aa11.82□□□□□ -0.52
SHKBP1-213ENST00000597325 TMEM220Q6QAJ8 160 aa11.82□□□□□ -0.52
SHKBP1-213ENST00000597325 ENPP7Q6UWV6 458 aa11.82□□□□□ -0.52
SHKBP1-213ENST00000597325 LAYNQ6UX15 382 aa11.82□□□□□ -0.52
SHKBP1-213ENST00000597325 TIFABQ6ZNK6 161 aa11.82□□□□□ -0.52
SHKBP1-213ENST00000597325 OTOAQ7RTW8 1153 aa11.82□□□□□ -0.52
SHKBP1-213ENST00000597325 CMC1Q7Z7K0 106 aa11.82□□□□□ -0.52
SHKBP1-213ENST00000597325 TRABD2AQ86V40 505 aa11.82□□□□□ -0.52
SHKBP1-213ENST00000597325 PIM3Q86V86 326 aa11.82□□□□□ -0.52
SHKBP1-213ENST00000597325 GATAD2AQ86YP4 633 aa11.82□□□□□ -0.52
SHKBP1-213ENST00000597325 DCP2Q8IU60 420 aaKnown RBP11.82□□□□□ -0.52
SHKBP1-213ENST00000597325 GALNT13Q8IUC8 556 aa11.82□□□□□ -0.52
SHKBP1-213ENST00000597325 KRT222Q8N1A0 295 aa11.82□□□□□ -0.52
SHKBP1-213ENST00000597325 MFSD2AQ8NA29 543 aa11.82□□□□□ -0.52
SHKBP1-213ENST00000597325 OR13H1Q8NG92 308 aa11.82□□□□□ -0.52
SHKBP1-213ENST00000597325 OR56A4Q8NGH8 313 aa11.82□□□□□ -0.52
SHKBP1-213ENST00000597325 ACMSDQ8TDX5 336 aa11.82□□□□□ -0.52
SHKBP1-213ENST00000597325 NAT14Q8WUY8 206 aa11.82□□□□□ -0.52
SHKBP1-213ENST00000597325 ISL2Q96A47 359 aa11.82□□□□□ -0.52
SHKBP1-213ENST00000597325 ATP6V1G3Q96LB4 118 aa11.82□□□□□ -0.52
SHKBP1-213ENST00000597325 GPR21Q99679 349 aa11.82□□□□□ -0.52
SHKBP1-213ENST00000597325 OLFM1Q99784 485 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms