RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 C16orf96A6NNT2 1141 aa15.01□□□□□ -0.01
UPF1-204ENST00000596842 NBNO60934 754 aa15.01□□□□□ -0.01
UPF1-204ENST00000596842 AKT1P31749 480 aa15.01□□□□□ -0.01
UPF1-204ENST00000596842 MAP2K4P45985 399 aa15.01□□□□□ -0.01
UPF1-204ENST00000596842 CD47Q08722 323 aa15.01□□□□□ -0.01
UPF1-204ENST00000596842 CRY1Q16526 586 aa15.01□□□□□ -0.01
UPF1-204ENST00000596842 NKG7Q16617 165 aa15.01□□□□□ -0.01
UPF1-204ENST00000596842 VARS2Q5ST30 1063 aaKnown RBP15.01□□□□□ -0.01
UPF1-204ENST00000596842 SLCO6A1Q86UG4 719 aa15.01□□□□□ -0.01
UPF1-204ENST00000596842 PNPT1Q8TCS8 783 aaKnown RBP15.01□□□□□ -0.01
UPF1-204ENST00000596842 SLC22A17Q8WUG5 538 aa15.01□□□□□ -0.01
UPF1-204ENST00000596842 SLC39A13Q96H72 371 aa15.01□□□□□ -0.01
UPF1-204ENST00000596842 CSF3RQ99062 836 aa15.01□□□□□ -0.01
UPF1-204ENST00000596842 CIPCQ9C0C6 399 aa15.01□□□□□ -0.01
UPF1-204ENST00000596842 RNF38Q9H0F5 515 aa15.01□□□□□ -0.01
UPF1-204ENST00000596842 SEPT3Q9UH03 358 aa15.01□□□□□ -0.01
UPF1-204ENST00000596842 PRAMEF11O60813 436 aa15□□□□□ -0.01
UPF1-204ENST00000596842 UMPSP11172 480 aa15□□□□□ -0.01
UPF1-204ENST00000596842 OGNP20774 298 aaKnown RBP15□□□□□ -0.01
UPF1-204ENST00000596842 GTF2H2Q13888 395 aa15□□□□□ -0.01
UPF1-204ENST00000596842 ATXN7L2Q5T6C5 722 aaPredicted RBP15□□□□□ -0.01
UPF1-204ENST00000596842 GTF2H2CQ6P1K8 395 aa15□□□□□ -0.01
UPF1-204ENST00000596842 USP50Q70EL3 339 aaPredicted RBP15□□□□□ -0.01
UPF1-204ENST00000596842 GOLGA7Q7Z5G4 137 aa15□□□□□ -0.01
UPF1-204ENST00000596842 ZFAND4Q86XD8 727 aa15□□□□□ -0.01
UPF1-204ENST00000596842 KLHDC8BQ8IXV7 354 aa15□□□□□ -0.01
UPF1-204ENST00000596842 LIX1Q8N485 282 aa15□□□□□ -0.01
UPF1-204ENST00000596842 STON2Q8WXE9 905 aa15□□□□□ -0.01
UPF1-204ENST00000596842 C1orf74Q96LT6 269 aa15□□□□□ -0.01
UPF1-204ENST00000596842 OR52E6Q96RD3 313 aa15□□□□□ -0.01
UPF1-204ENST00000596842 SPC25Q9HBM1 224 aa15□□□□□ -0.01
UPF1-204ENST00000596842 TLR8Q9NR97 1041 aaKnown RBP15□□□□□ -0.01
UPF1-204ENST00000596842 AGO1Q9UL18 857 aaKnown RBP15□□□□□ -0.01
UPF1-204ENST00000596842 PSME2Q9UL46 239 aa15□□□□□ -0.01
UPF1-204ENST00000596842 GON4LQ3T8J9 2241 aa15□□□□□ -0.01
UPF1-204ENST00000596842 A0A0U1RQF3 1178 aa15□□□□□ -0.01
UPF1-204ENST00000596842 LINC00854A0A1B0GVQ3 168 aa15□□□□□ -0.01
UPF1-204ENST00000596842 PFDN6O15212 129 aa15□□□□□ -0.01
UPF1-204ENST00000596842 ALPLP05186 524 aa15□□□□□ -0.01
UPF1-204ENST00000596842 RHOCP08134 193 aa15□□□□□ -0.01
UPF1-204ENST00000596842 TRPC1P48995 793 aa15□□□□□ -0.01
UPF1-204ENST00000596842 ADARB1P78563 741 aaKnown RBP15□□□□□ -0.01
UPF1-204ENST00000596842 EIF4EBP2Q13542 120 aaPredicted RBP15□□□□□ -0.01
UPF1-204ENST00000596842 PARP15Q460N3 678 aa15□□□□□ -0.01
UPF1-204ENST00000596842 NADSYN1Q6IA69 706 aa15□□□□□ -0.01
UPF1-204ENST00000596842 IGFN1Q86VF2 1251 aa15□□□□□ -0.01
UPF1-204ENST00000596842 ZNF420Q8TAQ5 688 aaPredicted RBP15□□□□□ -0.01
UPF1-204ENST00000596842 SLC13A3Q8WWT9 602 aa15□□□□□ -0.01
UPF1-204ENST00000596842 BOCQ9BWV1 1114 aa15□□□□□ -0.01
UPF1-204ENST00000596842 FAM118AQ9NWS6 357 aa15□□□□□ -0.01
UPF1-204ENST00000596842 LOC285556D6RIA3 1793 aa15□□□□□ -0.01
UPF1-204ENST00000596842 TYW5A2RUC4 315 aaKnown RBP15□□□□□ -0.01
UPF1-204ENST00000596842 E2F3O00716 465 aa15□□□□□ -0.01
UPF1-204ENST00000596842 HTR1EP28566 365 aa15□□□□□ -0.01
UPF1-204ENST00000596842 VBP1P61758 197 aa15□□□□□ -0.01
UPF1-204ENST00000596842 TMEM236Q5W0B7 351 aa15□□□□□ -0.01
UPF1-204ENST00000596842 RASAL3Q86YV0 1011 aa15□□□□□ -0.01
UPF1-204ENST00000596842 ALDH16A1Q8IZ83 802 aa15□□□□□ -0.01
UPF1-204ENST00000596842 SPARTQ8N0X7 666 aa15□□□□□ -0.01
UPF1-204ENST00000596842 FAM120BQ96EK7 910 aaKnown RBP15□□□□□ -0.01
UPF1-204ENST00000596842 SCML2Q9UQR0 700 aa15□□□□□ -0.01
UPF1-204ENST00000596842 INSIG1O15503 277 aa14.99□□□□□ -0.01
UPF1-204ENST00000596842 ABCB7O75027 752 aa14.99□□□□□ -0.01
UPF1-204ENST00000596842 CLPXO76031 633 aa14.99□□□□□ -0.01
UPF1-204ENST00000596842 SERPINA1P01009 418 aa14.99□□□□□ -0.01
UPF1-204ENST00000596842 GKP32189 559 aa14.99□□□□□ -0.01
UPF1-204ENST00000596842 BTG3Q14201 252 aaPredicted RBP14.99□□□□□ -0.01
UPF1-204ENST00000596842 TAF12Q16514 161 aa14.99□□□□□ -0.01
UPF1-204ENST00000596842 MOGQ16653 247 aa14.99□□□□□ -0.01
UPF1-204ENST00000596842 ADCK1Q86TW2 530 aa14.99□□□□□ -0.01
UPF1-204ENST00000596842 RBM23Q86U06 439 aaKnown RBP14.99□□□□□ -0.01
UPF1-204ENST00000596842 OR13F1Q8NGS4 319 aa14.99□□□□□ -0.01
UPF1-204ENST00000596842 CD200R1Q8TD46 325 aa14.99□□□□□ -0.01
UPF1-204ENST00000596842 TAMM41Q96BW9 452 aa14.99□□□□□ -0.01
UPF1-204ENST00000596842 PKMYT1Q99640 499 aa14.99□□□□□ -0.01
UPF1-204ENST00000596842 UGT2B28Q9BY64 529 aa14.99□□□□□ -0.01
UPF1-204ENST00000596842 SLC52A3Q9NQ40 469 aa14.99□□□□□ -0.01
UPF1-204ENST00000596842 KRT87PA6NCN2 255 aa14.99□□□□□ -0.01
UPF1-204ENST00000596842 WISP3O95389 354 aaPredicted RBP14.99□□□□□ -0.01
UPF1-204ENST00000596842 PRAMEF12O95522 483 aa14.99□□□□□ -0.01
UPF1-204ENST00000596842 RPL17P18621 184 aaKnown RBP14.99□□□□□ -0.01
UPF1-204ENST00000596842 HTR7P34969 479 aa14.99□□□□□ -0.01
UPF1-204ENST00000596842 FOXM1Q08050 763 aa14.99□□□□□ -0.01
UPF1-204ENST00000596842 NFE2Q16621 373 aaPredicted RBP14.99□□□□□ -0.01
UPF1-204ENST00000596842 C6orf141Q5SZD1 244 aa14.99□□□□□ -0.01
UPF1-204ENST00000596842 TTC23Q5W5X9 447 aa14.99□□□□□ -0.01
UPF1-204ENST00000596842 LRRC8DQ7L1W4 858 aa14.99□□□□□ -0.01
UPF1-204ENST00000596842 EFL1Q7Z2Z2 1120 aaKnown RBP14.99□□□□□ -0.01
UPF1-204ENST00000596842 HDAC2Q92769 488 aaKnown RBP14.99□□□□□ -0.01
UPF1-204ENST00000596842 RHNO1Q9BSD3 238 aa14.99□□□□□ -0.01
UPF1-204ENST00000596842 AMBNQ9NP70 447 aa14.99□□□□□ -0.01
UPF1-204ENST00000596842 ZSWIM8A7E2V4 1837 aa14.99□□□□□ -0.01
UPF1-204ENST00000596842 PLXNB2O15031 1838 aa14.99□□□□□ -0.01
UPF1-204ENST00000596842 hCG_2039718K7EN88 272 aa14.99□□□□□ -0.01
UPF1-204ENST00000596842 M0QZQ0 153 aa14.99□□□□□ -0.01
UPF1-204ENST00000596842 TSPAN9O75954 239 aa14.99□□□□□ -0.01
UPF1-204ENST00000596842 FKBP9O95302 570 aa14.99□□□□□ -0.01
UPF1-204ENST00000596842 FADS2O95864 444 aaKnown RBP14.99□□□□□ -0.01
UPF1-204ENST00000596842 AKR1A1P14550 325 aa14.99□□□□□ -0.01
UPF1-204ENST00000596842 CRHBPP24387 322 aa14.99□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms