RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 APBA2Q99767 749 aa10.67□□□□□ -0.7
CLK3-226ENST00000569406 NFKBIZQ9BYH8 718 aa10.67□□□□□ -0.7
CLK3-226ENST00000569406 UPF3AQ9H1J1 476 aaKnown RBP10.67□□□□□ -0.7
CLK3-226ENST00000569406 ESRP2Q9H6T0 727 aaKnown RBP10.67□□□□□ -0.7
CLK3-226ENST00000569406 ADARB2Q9NS39 739 aaKnown RBP10.67□□□□□ -0.7
CLK3-226ENST00000569406 SETD4Q9NVD3 440 aa10.67□□□□□ -0.7
CLK3-226ENST00000569406 ACOT9Q9Y305 439 aa10.67□□□□□ -0.7
CLK3-226ENST00000569406 CBY1Q9Y3M2 126 aa10.67□□□□□ -0.7
CLK3-226ENST00000569406 ZNF638Q14966 1978 aaKnown RBP10.67□□□□□ -0.7
CLK3-226ENST00000569406 A0A0G2JPF8 293 aa10.66□□□□□ -0.7
CLK3-226ENST00000569406 HNRNPCL3B7ZW38 293 aa10.66□□□□□ -0.7
CLK3-226ENST00000569406 TRIM38O00635 465 aa10.66□□□□□ -0.7
CLK3-226ENST00000569406 STX7O15400 261 aaKnown RBP10.66□□□□□ -0.7
CLK3-226ENST00000569406 SNNO75324 88 aaPredicted RBP10.66□□□□□ -0.7
CLK3-226ENST00000569406 LSM8O95777 96 aaKnown RBP10.66□□□□□ -0.7
CLK3-226ENST00000569406 HNRNPCL4P0DMR1 293 aa10.66□□□□□ -0.7
CLK3-226ENST00000569406 ITGB6P18564 788 aa10.66□□□□□ -0.7
CLK3-226ENST00000569406 PTAFRP25105 342 aa10.66□□□□□ -0.7
CLK3-226ENST00000569406 NUP62P37198 522 aaPredicted RBP10.66□□□□□ -0.7
CLK3-226ENST00000569406 SLC15A1P46059 708 aa10.66□□□□□ -0.7
CLK3-226ENST00000569406 DUSP6Q16828 381 aa10.66□□□□□ -0.7
CLK3-226ENST00000569406 TPRG1LQ5T0D9 272 aa10.66□□□□□ -0.7
CLK3-226ENST00000569406 MAP1SQ66K74 1059 aaPredicted RBP10.66□□□□□ -0.7
CLK3-226ENST00000569406 GPAT4Q86UL3 456 aa10.66□□□□□ -0.7
CLK3-226ENST00000569406 MFSD2AQ8NA29 543 aa10.66□□□□□ -0.7
CLK3-226ENST00000569406 KCT2Q8NC54 265 aa10.66□□□□□ -0.7
CLK3-226ENST00000569406 MTFMTQ96DP5 389 aaKnown RBP10.66□□□□□ -0.7
CLK3-226ENST00000569406 PIWIL1Q96J94 861 aaKnown RBP10.66□□□□□ -0.7
CLK3-226ENST00000569406 GPR63Q9BZJ6 419 aa10.66□□□□□ -0.7
CLK3-226ENST00000569406 SLC19A3Q9BZV2 496 aa10.66□□□□□ -0.7
CLK3-226ENST00000569406 BRD9Q9H8M2 597 aa10.66□□□□□ -0.7
CLK3-226ENST00000569406 CD320Q9NPF0 282 aa10.66□□□□□ -0.7
CLK3-226ENST00000569406 CUEDC1Q9NWM3 386 aaPredicted RBP10.66□□□□□ -0.7
CLK3-226ENST00000569406 ACSL5Q9ULC5 683 aa10.66□□□□□ -0.7
CLK3-226ENST00000569406 MAGED1Q9Y5V3 778 aaPredicted RBP10.66□□□□□ -0.7
CLK3-226ENST00000569406 TRIM24O15164 1050 aa10.66□□□□□ -0.7
CLK3-226ENST00000569406 TO15178 435 aa10.66□□□□□ -0.7
CLK3-226ENST00000569406 ZNF623O75123 536 aa10.66□□□□□ -0.7
CLK3-226ENST00000569406 LRCH4O75427 683 aa10.66□□□□□ -0.7
CLK3-226ENST00000569406 CYP7B1O75881 506 aa10.66□□□□□ -0.7
CLK3-226ENST00000569406 PFKMP08237 780 aa10.66□□□□□ -0.7
CLK3-226ENST00000569406 PSMA2P25787 234 aa10.66□□□□□ -0.7
CLK3-226ENST00000569406 PSMB9P28065 219 aa10.66□□□□□ -0.7
CLK3-226ENST00000569406 GDF10P55107 478 aa10.66□□□□□ -0.7
CLK3-226ENST00000569406 GPR50Q13585 617 aa10.66□□□□□ -0.7
CLK3-226ENST00000569406 MXD4Q14582 209 aaPredicted RBP10.66□□□□□ -0.7
CLK3-226ENST00000569406 OTUD3Q5T2D3 398 aaPredicted RBP10.66□□□□□ -0.7
CLK3-226ENST00000569406 PKN3Q6P5Z2 889 aa10.66□□□□□ -0.7
CLK3-226ENST00000569406 SHQ1Q6PI26 577 aaKnown RBP10.66□□□□□ -0.7
CLK3-226ENST00000569406 RANBP10Q6VN20 620 aa10.66□□□□□ -0.7
CLK3-226ENST00000569406 ILDR2Q71H61 639 aa10.66□□□□□ -0.7
CLK3-226ENST00000569406 ERO1BQ86YB8 467 aa10.66□□□□□ -0.7
CLK3-226ENST00000569406 TTC16Q8NEE8 873 aa10.66□□□□□ -0.7
CLK3-226ENST00000569406 RBPMSQ93062 196 aaKnown RBP10.66□□□□□ -0.7
CLK3-226ENST00000569406 LINC00052Q96N35 136 aa10.66□□□□□ -0.7
CLK3-226ENST00000569406 ELOVL4Q9GZR5 314 aa10.66□□□□□ -0.7
CLK3-226ENST00000569406 PAK1IP1Q9NWT1 392 aaPredicted RBP10.66□□□□□ -0.7
CLK3-226ENST00000569406 ERVK13-1Q9NX77 482 aa10.66□□□□□ -0.7
CLK3-226ENST00000569406 SMPD3Q9NY59 655 aaPredicted RBP10.66□□□□□ -0.7
CLK3-226ENST00000569406 ABCG2Q9UNQ0 655 aa10.66□□□□□ -0.7
CLK3-226ENST00000569406 GRIP1Q9Y3R0 1128 aa10.66□□□□□ -0.7
CLK3-226ENST00000569406 COPG1Q9Y678 874 aaKnown RBP10.66□□□□□ -0.7
CLK3-226ENST00000569406 LAMA2P24043 3122 aaKnown RBP10.66□□□□□ -0.7
CLK3-226ENST00000569406 A0A1B0GV90 55 aa10.66□□□□□ -0.7
CLK3-226ENST00000569406 SLC30A4O14863 429 aa10.66□□□□□ -0.7
CLK3-226ENST00000569406 S100A9P06702 114 aaKnown RBP10.66□□□□□ -0.7
CLK3-226ENST00000569406 BMP1P13497 986 aa10.66□□□□□ -0.7
CLK3-226ENST00000569406 PBLDP30039 288 aaPredicted RBP10.66□□□□□ -0.7
CLK3-226ENST00000569406 TSC22D1Q15714 1073 aa10.66□□□□□ -0.7
CLK3-226ENST00000569406 DUOXA2Q1HG44 320 aa10.66□□□□□ -0.7
CLK3-226ENST00000569406 ZNF404Q494X3 552 aa10.66□□□□□ -0.7
CLK3-226ENST00000569406 LRRC38Q5VT99 294 aa10.66□□□□□ -0.7
CLK3-226ENST00000569406 STRADAQ7RTN6 431 aa10.66□□□□□ -0.7
CLK3-226ENST00000569406 GPR142Q7Z601 462 aa10.66□□□□□ -0.7
CLK3-226ENST00000569406 P2RY8Q86VZ1 359 aa10.66□□□□□ -0.7
CLK3-226ENST00000569406 RASAL3Q86YV0 1011 aa10.66□□□□□ -0.7
CLK3-226ENST00000569406 ANKFN1Q8N957 763 aa10.66□□□□□ -0.7
CLK3-226ENST00000569406 KCTD6Q8NC69 237 aa10.66□□□□□ -0.7
CLK3-226ENST00000569406 SLC35B2Q8TB61 432 aa10.66□□□□□ -0.7
CLK3-226ENST00000569406 DYNC2LI1Q8TCX1 351 aa10.66□□□□□ -0.7
CLK3-226ENST00000569406 LRRN4Q8WUT4 740 aa10.66□□□□□ -0.7
CLK3-226ENST00000569406 TCEAL3Q969E4 200 aa10.66□□□□□ -0.7
CLK3-226ENST00000569406 RAD51AP1Q96B01 352 aa10.66□□□□□ -0.7
CLK3-226ENST00000569406 SPATA33Q96N06 139 aa10.66□□□□□ -0.7
CLK3-226ENST00000569406 C16orf70Q9BSU1 422 aa10.66□□□□□ -0.7
CLK3-226ENST00000569406 C1QTNF1Q9BXJ1 281 aa10.66□□□□□ -0.7
CLK3-226ENST00000569406 PPP1R14DQ9NXH3 145 aa10.66□□□□□ -0.7
CLK3-226ENST00000569406 A0A1B0GWJ7 208 aa10.65□□□□□ -0.7
CLK3-226ENST00000569406 CXCL11O14625 94 aa10.65□□□□□ -0.7
CLK3-226ENST00000569406 ANGPT2O15123 496 aa10.65□□□□□ -0.7
CLK3-226ENST00000569406 CLN5O75503 358 aa10.65□□□□□ -0.7
CLK3-226ENST00000569406 LDOC1O95751 146 aaPredicted RBP10.65□□□□□ -0.7
CLK3-226ENST00000569406 DARSP14868 501 aaKnown RBP10.65□□□□□ -0.7
CLK3-226ENST00000569406 YBX3P16989 372 aaKnown RBP eCLIP10.65□□□□□ -0.72e-6■■■□□ 18.1
CLK3-226ENST00000569406 GRK3P35626 688 aa10.65□□□□□ -0.7
CLK3-226ENST00000569406 GGT5P36269 586 aa10.65□□□□□ -0.7
CLK3-226ENST00000569406 C21orf58P58505 322 aa10.65□□□□□ -0.7
CLK3-226ENST00000569406 TAB1Q15750 504 aa10.65□□□□□ -0.7
CLK3-226ENST00000569406 FAM187BQ17R55 369 aa10.65□□□□□ -0.7
CLK3-226ENST00000569406 SLC10A6Q3KNW5 377 aa10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms