RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 SLC22A18ASQ8N1D0 253 aa29.89■■■□□ 2.38
CTCF-203ENST00000566078 PDPRQ8NCN5 879 aa29.89■■■□□ 2.38
CTCF-203ENST00000566078 HSPA12BQ96MM6 686 aa29.89■■■□□ 2.38
CTCF-203ENST00000566078 C7orf26Q96N11 449 aa29.89■■■□□ 2.38
CTCF-203ENST00000566078 FOPNLQ96NB1 174 aa29.89■■■□□ 2.38
CTCF-203ENST00000566078 OR2M4Q96R27 311 aa29.89■■■□□ 2.38
CTCF-203ENST00000566078 ERVK-6Q9BXR3 956 aa29.89■■■□□ 2.38
CTCF-203ENST00000566078 PARVBQ9HBI1 364 aa29.89■■■□□ 2.38
CTCF-203ENST00000566078 EIF2B4Q9UI10 523 aaKnown RBP29.89■■■□□ 2.38
CTCF-203ENST00000566078 PDE10AQ9Y233 779 aa29.89■■■□□ 2.38
CTCF-203ENST00000566078 TNRC6BQ9UPQ9 1833 aaKnown RBP29.89■■■□□ 2.38
CTCF-203ENST00000566078 CCDC163A0A0D9SF12 145 aa29.89■■■□□ 2.37
CTCF-203ENST00000566078 GFYI3L273 518 aa29.89■■■□□ 2.37
CTCF-203ENST00000566078 SCAMP1O15126 338 aa29.89■■■□□ 2.37
CTCF-203ENST00000566078 SIX3O95343 332 aaPredicted RBP29.89■■■□□ 2.37
CTCF-203ENST00000566078 THEGLP0DJG4 465 aa29.89■■■□□ 2.37
CTCF-203ENST00000566078 MAPK9P45984 424 aa29.89■■■□□ 2.37
CTCF-203ENST00000566078 DMPKQ09013 629 aa29.89■■■□□ 2.37
CTCF-203ENST00000566078 FBXO48Q5FWF7 155 aa29.89■■■□□ 2.37
CTCF-203ENST00000566078 EGFL8Q99944 293 aa29.89■■■□□ 2.37
CTCF-203ENST00000566078 TRIM54Q9BYV2 358 aa29.89■■■□□ 2.37
CTCF-203ENST00000566078 DRC3Q9H069 523 aa29.89■■■□□ 2.37
CTCF-203ENST00000566078 OR52A5Q9H2C5 316 aa29.89■■■□□ 2.37
CTCF-203ENST00000566078 KCNK6Q9Y257 313 aa29.89■■■□□ 2.37
CTCF-203ENST00000566078 PLEKHM1Q9Y4G2 1056 aa29.89■■■□□ 2.37
CTCF-203ENST00000566078 TDRD6O60522 2096 aaKnown RBP29.88■■■□□ 2.37
CTCF-203ENST00000566078 PABPN1LA6NDY0 278 aaKnown RBP29.88■■■□□ 2.37
CTCF-203ENST00000566078 STX16-NPEPL1H3BU86 382 aa29.88■■■□□ 2.37
CTCF-203ENST00000566078 STX16O14662 325 aa29.88■■■□□ 2.37
CTCF-203ENST00000566078 TNFRSF10CO14798 259 aa29.88■■■□□ 2.37
CTCF-203ENST00000566078 NPHS1O60500 1241 aa29.88■■■□□ 2.37
CTCF-203ENST00000566078 PSIP1O75475 530 aaKnown RBP29.88■■■□□ 2.37
CTCF-203ENST00000566078 HSPA4LO95757 839 aa29.88■■■□□ 2.37
CTCF-203ENST00000566078 TDGF1P13385 188 aa29.88■■■□□ 2.37
CTCF-203ENST00000566078 EEF1DP29692 281 aaKnown RBP29.88■■■□□ 2.37
CTCF-203ENST00000566078 CCR10P46092 362 aa29.88■■■□□ 2.37
CTCF-203ENST00000566078 RPIAP49247 311 aa29.88■■■□□ 2.37
CTCF-203ENST00000566078 OVGP1Q12889 678 aa29.88■■■□□ 2.37
CTCF-203ENST00000566078 SETDB1Q15047 1291 aa29.88■■■□□ 2.37
CTCF-203ENST00000566078 METRNLQ641Q3 311 aa29.88■■■□□ 2.37
CTCF-203ENST00000566078 CGB2Q6NT52 195 aa29.88■■■□□ 2.37
CTCF-203ENST00000566078 RASGRP3Q8IV61 690 aa29.88■■■□□ 2.37
CTCF-203ENST00000566078 TSACCQ96A04 125 aaPredicted RBP29.88■■■□□ 2.37
CTCF-203ENST00000566078 OSGEPL1Q9H4B0 414 aa29.88■■■□□ 2.37
CTCF-203ENST00000566078 GON4LQ3T8J9 2241 aa29.87■■■□□ 2.37
CTCF-203ENST00000566078 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa29.87■■■□□ 2.37
CTCF-203ENST00000566078 LRRC14BA6NHZ5 514 aa29.87■■■□□ 2.37
CTCF-203ENST00000566078 NDUFAB1O14561 156 aa29.87■■■□□ 2.37
CTCF-203ENST00000566078 PTK2BQ14289 1009 aa29.87■■■□□ 2.37
CTCF-203ENST00000566078 MBOAT1Q6ZNC8 495 aa29.87■■■□□ 2.37
CTCF-203ENST00000566078 ATG14Q6ZNE5 492 aa29.87■■■□□ 2.37
CTCF-203ENST00000566078 RPS27LQ71UM5 84 aaKnown RBP29.87■■■□□ 2.37
CTCF-203ENST00000566078 RD3Q7Z3Z2 195 aa29.87■■■□□ 2.37
CTCF-203ENST00000566078 TMEFF1Q8IYR6 380 aa29.87■■■□□ 2.37
CTCF-203ENST00000566078 FAM174AQ8TBP5 190 aa29.87■■■□□ 2.37
CTCF-203ENST00000566078 PPP4R1Q8TF05 950 aa29.87■■■□□ 2.37
CTCF-203ENST00000566078 ZNF473Q8WTR7 871 aaKnown RBP29.87■■■□□ 2.37
CTCF-203ENST00000566078 SORT1Q99523 831 aa29.87■■■□□ 2.37
CTCF-203ENST00000566078 ARL15Q9NXU5 204 aa29.87■■■□□ 2.37
CTCF-203ENST00000566078 ZKSCAN7Q9P0L1 754 aaPredicted RBP29.87■■■□□ 2.37
CTCF-203ENST00000566078 PNMA8BQ9ULN7 279 aaPredicted RBP29.87■■■□□ 2.37
CTCF-203ENST00000566078 ARHGEF33A8MVX0 844 aa29.86■■■□□ 2.37
CTCF-203ENST00000566078 SUPT7LO94864 414 aa29.86■■■□□ 2.37
CTCF-203ENST00000566078 CATP04040 527 aaKnown RBP29.86■■■□□ 2.37
CTCF-203ENST00000566078 HIST1H2AGP0C0S8 130 aaPredicted RBP29.86■■■□□ 2.37
CTCF-203ENST00000566078 HIST1H2ADP20671 130 aa29.86■■■□□ 2.37
CTCF-203ENST00000566078 BDKRB1P46663 353 aa29.86■■■□□ 2.37
CTCF-203ENST00000566078 AGTR2P50052 363 aa29.86■■■□□ 2.37
CTCF-203ENST00000566078 SRP54P61011 504 aaKnown RBP29.86■■■□□ 2.37
CTCF-203ENST00000566078 UNC50Q53HI1 259 aa29.86■■■□□ 2.37
CTCF-203ENST00000566078 PDZD3Q86UT5 571 aa29.86■■■□□ 2.37
CTCF-203ENST00000566078 WDR5BQ86VZ2 330 aa29.86■■■□□ 2.37
CTCF-203ENST00000566078 TMEM105Q8N8V8 129 aa29.86■■■□□ 2.37
CTCF-203ENST00000566078 KLHDC7BQ96G42 594 aa29.86■■■□□ 2.37
CTCF-203ENST00000566078 HIST1H2AHQ96KK5 128 aa29.86■■■□□ 2.37
CTCF-203ENST00000566078 HIST1H2AJQ99878 128 aa29.86■■■□□ 2.37
CTCF-203ENST00000566078 H2AFJQ9BTM1 129 aa29.86■■■□□ 2.37
CTCF-203ENST00000566078 GPR27Q9NS67 375 aa29.86■■■□□ 2.37
CTCF-203ENST00000566078 PSMD13Q9UNM6 376 aa29.86■■■□□ 2.37
CTCF-203ENST00000566078 SPAG17Q6Q759 2223 aa29.86■■■□□ 2.37
CTCF-203ENST00000566078 ZDBF2Q9HCK1 2354 aa29.86■■■□□ 2.37
CTCF-203ENST00000566078 KCNJ13O60928 360 aa29.85■■■□□ 2.37
CTCF-203ENST00000566078 MAOBP27338 520 aa29.85■■■□□ 2.37
CTCF-203ENST00000566078 MAP4P27816 1152 aaKnown RBP29.85■■■□□ 2.37
CTCF-203ENST00000566078 SERPINB5P36952 375 aa29.85■■■□□ 2.37
CTCF-203ENST00000566078 SF3A3Q12874 501 aaKnown RBP eCLIP29.85■■■□□ 2.37
CTCF-203ENST00000566078 ALG11Q2TAA5 492 aa29.85■■■□□ 2.37
CTCF-203ENST00000566078 FRMD7Q6ZUT3 714 aa29.85■■■□□ 2.37
CTCF-203ENST00000566078 CRLF3Q8IUI8 442 aa29.85■■■□□ 2.37
CTCF-203ENST00000566078 C1orf210Q8IVY1 113 aa29.85■■■□□ 2.37
CTCF-203ENST00000566078 MCOLN3Q8TDD5 553 aa29.85■■■□□ 2.37
CTCF-203ENST00000566078 CNDP1Q96KN2 507 aa29.85■■■□□ 2.37
CTCF-203ENST00000566078 ELAC2Q9BQ52 826 aaKnown RBP29.85■■■□□ 2.37
CTCF-203ENST00000566078 MIR1-1HGQ9H1L0 117 aa29.85■■■□□ 2.37
CTCF-203ENST00000566078 GSTO2Q9H4Y5 243 aa29.85■■■□□ 2.37
CTCF-203ENST00000566078 CHRNGP07510 517 aa29.85■■■□□ 2.37
CTCF-203ENST00000566078 CDKL1Q00532 357 aa29.85■■■□□ 2.37
CTCF-203ENST00000566078 CSTF1Q05048 431 aaKnown RBP29.85■■■□□ 2.37
CTCF-203ENST00000566078 C18orf21Q32NC0 220 aaPredicted RBP29.85■■■□□ 2.37
CTCF-203ENST00000566078 EEF1AKMT2Q5JPI9 291 aaKnown RBP29.85■■■□□ 2.37
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms