RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-223ENST00000556689 BCL7AQ4VC05 210 aa12.27□□□□□ -0.45
SHMT2-223ENST00000556689 ZNF385CQ66K41 422 aaPredicted RBP12.27□□□□□ -0.45
SHMT2-223ENST00000556689 Q6ZS92 163 aa12.27□□□□□ -0.45
SHMT2-223ENST00000556689 DAAM2Q86T65 1068 aa12.27□□□□□ -0.45
SHMT2-223ENST00000556689 ST6GALNAC3Q8NDV1 305 aa12.27□□□□□ -0.45
SHMT2-223ENST00000556689 TFB1MQ8WVM0 346 aaKnown RBP12.27□□□□□ -0.45
SHMT2-223ENST00000556689 UBE2Q2Q8WVN8 375 aa12.27□□□□□ -0.45
SHMT2-223ENST00000556689 N4BP2L2Q92802 583 aaPredicted RBP12.27□□□□□ -0.45
SHMT2-223ENST00000556689 INPP5DQ92835 1189 aa12.27□□□□□ -0.45
SHMT2-223ENST00000556689 MRGPRX2Q96LB1 330 aa12.27□□□□□ -0.45
SHMT2-223ENST00000556689 RMDN2Q96LZ7 410 aa12.27□□□□□ -0.45
SHMT2-223ENST00000556689 TRAPPC9Q96Q05 1148 aa12.27□□□□□ -0.45
SHMT2-223ENST00000556689 PITPNM3Q9BZ71 974 aa12.27□□□□□ -0.45
SHMT2-223ENST00000556689 ASB8Q9H765 288 aa12.27□□□□□ -0.45
SHMT2-223ENST00000556689 PTRH2Q9Y3E5 179 aaKnown RBP12.27□□□□□ -0.45
SHMT2-223ENST00000556689 AP1M2Q9Y6Q5 423 aa12.27□□□□□ -0.45
SHMT2-223ENST00000556689 CENPEQ02224 2701 aa12.26□□□□□ -0.45
SHMT2-223ENST00000556689 HIVEP3Q5T1R4 2406 aa12.26□□□□□ -0.45
SHMT2-223ENST00000556689 CCDC66A2RUB6 948 aa12.26□□□□□ -0.45
SHMT2-223ENST00000556689 BTN3A3O00478 584 aa12.26□□□□□ -0.45
SHMT2-223ENST00000556689 BTN3A1O00481 513 aa12.26□□□□□ -0.45
SHMT2-223ENST00000556689 LRRTM2O43300 516 aa12.26□□□□□ -0.45
SHMT2-223ENST00000556689 PRAMEF1O95521 474 aa12.26□□□□□ -0.45
SHMT2-223ENST00000556689 RALBP11234 206 aa12.26□□□□□ -0.45
SHMT2-223ENST00000556689 NFKB1P19838 968 aa12.26□□□□□ -0.45
SHMT2-223ENST00000556689 FOLR3P41439 243 aa12.26□□□□□ -0.45
SHMT2-223ENST00000556689 PER3P56645 1201 aa12.26□□□□□ -0.45
SHMT2-223ENST00000556689 SOX8P57073 446 aa12.26□□□□□ -0.45
SHMT2-223ENST00000556689 WASHC5Q12768 1159 aa12.26□□□□□ -0.45
SHMT2-223ENST00000556689 PTPRCAPQ14761 206 aa12.26□□□□□ -0.45
SHMT2-223ENST00000556689 PRKD1Q15139 912 aaPredicted RBP12.26□□□□□ -0.45
SHMT2-223ENST00000556689 CDHR3Q6ZTQ4 885 aa12.26□□□□□ -0.45
SHMT2-223ENST00000556689 PID1Q7Z2X4 250 aa12.26□□□□□ -0.45
SHMT2-223ENST00000556689 CUZD1Q86UP6 607 aa12.26□□□□□ -0.45
SHMT2-223ENST00000556689 HOOK3Q86VS8 718 aa12.26□□□□□ -0.45
SHMT2-223ENST00000556689 LILRA3Q8N6C8 439 aaPredicted RBP12.26□□□□□ -0.45
SHMT2-223ENST00000556689 RNF214Q8ND24 703 aa12.26□□□□□ -0.45
SHMT2-223ENST00000556689 NAT14Q8WUY8 206 aa12.26□□□□□ -0.45
SHMT2-223ENST00000556689 RNF25Q96BH1 459 aaPredicted RBP12.26□□□□□ -0.45
SHMT2-223ENST00000556689 PTERQ96BW5 349 aa12.26□□□□□ -0.45
SHMT2-223ENST00000556689 MOCOSQ96EN8 888 aa12.26□□□□□ -0.45
SHMT2-223ENST00000556689 DCUN1D1Q96GG9 259 aa12.26□□□□□ -0.45
SHMT2-223ENST00000556689 KLHL25Q9H0H3 589 aa12.26□□□□□ -0.45
SHMT2-223ENST00000556689 TFB2MQ9H5Q4 396 aaKnown RBP12.26□□□□□ -0.45
SHMT2-223ENST00000556689 ATP13A2Q9NQ11 1180 aa12.26□□□□□ -0.45
SHMT2-223ENST00000556689 P4HTMQ9NXG6 502 aa12.26□□□□□ -0.45
SHMT2-223ENST00000556689 IFT80Q9P2H3 777 aaPredicted RBP12.26□□□□□ -0.45
SHMT2-223ENST00000556689 NDOR1Q9UHB4 597 aa12.26□□□□□ -0.45
SHMT2-223ENST00000556689 NENFQ9UMX5 172 aa12.26□□□□□ -0.45
SHMT2-223ENST00000556689 NTNG1Q9Y2I2 539 aa12.26□□□□□ -0.45
SHMT2-223ENST00000556689 LUC7L2Q9Y383 392 aaKnown RBP12.26□□□□□ -0.45
SHMT2-223ENST00000556689 PCDHGA10Q9Y5H3 936 aa12.26□□□□□ -0.45
SHMT2-223ENST00000556689 LRBAP50851 2863 aa12.25□□□□□ -0.45
SHMT2-223ENST00000556689 C17orf113A0A1B0GUU1 675 aa12.25□□□□□ -0.45
SHMT2-223ENST00000556689 C2orf81A6NN90 581 aa12.25□□□□□ -0.45
SHMT2-223ENST00000556689 C2orf74A8MZ97 194 aa12.25□□□□□ -0.45
SHMT2-223ENST00000556689 IFRD1O00458 451 aaPredicted RBP12.25□□□□□ -0.45
SHMT2-223ENST00000556689 SGTAO43765 313 aa12.25□□□□□ -0.45
SHMT2-223ENST00000556689 OR2B3O76000 313 aa12.25□□□□□ -0.45
SHMT2-223ENST00000556689 SRP72O76094 671 aaKnown RBP12.25□□□□□ -0.45
SHMT2-223ENST00000556689 CBSLP0DN79 551 aa12.25□□□□□ -0.45
SHMT2-223ENST00000556689 PVRP15151 417 aa12.25□□□□□ -0.45
SHMT2-223ENST00000556689 POU3F2P20265 443 aaPredicted RBP12.25□□□□□ -0.45
SHMT2-223ENST00000556689 CBSP35520 551 aa12.25□□□□□ -0.45
SHMT2-223ENST00000556689 PBX1P40424 430 aa12.25□□□□□ -0.45
SHMT2-223ENST00000556689 DCDP81605 110 aaKnown RBP12.25□□□□□ -0.45
SHMT2-223ENST00000556689 NAA30Q147X3 362 aaPredicted RBP12.25□□□□□ -0.45
SHMT2-223ENST00000556689 LRRC38Q5VT99 294 aa12.25□□□□□ -0.45
SHMT2-223ENST00000556689 C1orf189Q5VU69 101 aa12.25□□□□□ -0.45
SHMT2-223ENST00000556689 SP5Q6BEB4 398 aaPredicted RBP12.25□□□□□ -0.45
SHMT2-223ENST00000556689 SARM1Q6SZW1 724 aa12.25□□□□□ -0.45
SHMT2-223ENST00000556689 KCNMB4Q86W47 210 aa12.25□□□□□ -0.45
SHMT2-223ENST00000556689 AMIGO1Q86WK6 493 aa12.25□□□□□ -0.45
SHMT2-223ENST00000556689 PHC3Q8NDX5 983 aa12.25□□□□□ -0.45
SHMT2-223ENST00000556689 IPMKQ8NFU5 416 aa12.25□□□□□ -0.45
SHMT2-223ENST00000556689 OR2Y1Q8NGV0 311 aa12.25□□□□□ -0.45
SHMT2-223ENST00000556689 SLC35G2Q8TBE7 412 aa12.25□□□□□ -0.45
SHMT2-223ENST00000556689 HM13Q8TCT9 377 aa12.25□□□□□ -0.45
SHMT2-223ENST00000556689 MARVELD3Q96A59 401 aa12.25□□□□□ -0.45
SHMT2-223ENST00000556689 IQCDQ96DY2 449 aa12.25□□□□□ -0.45
SHMT2-223ENST00000556689 RBM41Q96IZ5 413 aaKnown RBP12.25□□□□□ -0.45
SHMT2-223ENST00000556689 FCRL5Q96RD9 977 aa12.25□□□□□ -0.45
SHMT2-223ENST00000556689 AP1M1Q9BXS5 423 aa12.25□□□□□ -0.45
SHMT2-223ENST00000556689 PACSIN1Q9BY11 444 aa12.25□□□□□ -0.45
SHMT2-223ENST00000556689 ZBTB20Q9HC78 741 aaPredicted RBP12.25□□□□□ -0.45
SHMT2-223ENST00000556689 ACTR10Q9NZ32 417 aa12.25□□□□□ -0.45
SHMT2-223ENST00000556689 KLHL8Q9P2G9 620 aaPredicted RBP12.25□□□□□ -0.45
SHMT2-223ENST00000556689 SAE1Q9UBE0 346 aaPredicted RBP12.25□□□□□ -0.45
SHMT2-223ENST00000556689 SRPK3Q9UPE1 567 aa12.25□□□□□ -0.45
SHMT2-223ENST00000556689 ENTPD4Q9Y227 616 aa12.25□□□□□ -0.45
SHMT2-223ENST00000556689 ARL5AQ9Y689 179 aa12.25□□□□□ -0.45
SHMT2-223ENST00000556689 DOPEY1Q5JWR5 2465 aa12.25□□□□□ -0.45
SHMT2-223ENST00000556689 ARHGAP10A1A4S6 786 aa12.24□□□□□ -0.45
SHMT2-223ENST00000556689 KRT1P04264 644 aa12.24□□□□□ -0.45
SHMT2-223ENST00000556689 TMEM253P0C7T8 217 aa12.24□□□□□ -0.45
SHMT2-223ENST00000556689 ATXN8OSP0DMR3 200 aa12.24□□□□□ -0.45
SHMT2-223ENST00000556689 ATP1B2P14415 290 aaPredicted RBP12.24□□□□□ -0.45
SHMT2-223ENST00000556689 ARHGAP25P42331 645 aa12.24□□□□□ -0.45
SHMT2-223ENST00000556689 CD151P48509 253 aa12.24□□□□□ -0.45
SHMT2-223ENST00000556689 AIMP2Q13155 320 aaKnown RBP12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms