RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 ACKR4Q9NPB9 350 aa4.19□□□□□ -1.74
SCFD1-221ENST00000556534 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP4.19□□□□□ -1.744e-7■■■■■ 32.6
SCFD1-221ENST00000556534 COQ3Q9NZJ6 369 aa4.19□□□□□ -1.74
SCFD1-221ENST00000556534 OR6C76A6NM76 312 aa4.18□□□□□ -1.74
SCFD1-221ENST00000556534 PRR32B1ATL7 298 aa4.18□□□□□ -1.74
SCFD1-221ENST00000556534 K7ENM7 598 aa4.18□□□□□ -1.74
SCFD1-221ENST00000556534 XRCC3O43542 346 aa4.18□□□□□ -1.74
SCFD1-221ENST00000556534 PCDH7O60245 1069 aa4.18□□□□□ -1.74
SCFD1-221ENST00000556534 MED24O75448 989 aa4.18□□□□□ -1.74
SCFD1-221ENST00000556534 TOMM70O94826 608 aa4.18□□□□□ -1.74
SCFD1-221ENST00000556534 CENPBP07199 599 aaPredicted RBP4.18□□□□□ -1.74
SCFD1-221ENST00000556534 GABRA5P31644 462 aa4.18□□□□□ -1.74
SCFD1-221ENST00000556534 KRTAP10-6P60371 365 aaPredicted RBP4.18□□□□□ -1.74
SCFD1-221ENST00000556534 RPS18P62269 152 aaKnown RBP4.18□□□□□ -1.74
SCFD1-221ENST00000556534 MRGPRG-AS1Q2M3A8 158 aa4.18□□□□□ -1.74
SCFD1-221ENST00000556534 ZNF876PQ49A33 203 aa4.18□□□□□ -1.74
SCFD1-221ENST00000556534 FAM53AQ6NSI3 398 aaPredicted RBP4.18□□□□□ -1.74
SCFD1-221ENST00000556534 MFSD6Q6ZSS7 791 aa4.18□□□□□ -1.74
SCFD1-221ENST00000556534 PCGF5Q86SE9 256 aa4.18□□□□□ -1.74
SCFD1-221ENST00000556534 ADGRA1Q86SQ6 560 aa4.18□□□□□ -1.74
SCFD1-221ENST00000556534 ISCA2Q86U28 154 aa4.18□□□□□ -1.74
SCFD1-221ENST00000556534 FAM114A1Q8IWE2 563 aa4.18□□□□□ -1.74
SCFD1-221ENST00000556534 CEP57L1Q8IYX8 460 aa4.18□□□□□ -1.74
SCFD1-221ENST00000556534 MOSPD2Q8NHP6 518 aa4.18□□□□□ -1.74
SCFD1-221ENST00000556534 OLIG1Q8TAK6 271 aa4.18□□□□□ -1.74
SCFD1-221ENST00000556534 TMCO6Q96DC7 493 aa4.18□□□□□ -1.74
SCFD1-221ENST00000556534 SGK494Q96LW2 274 aa4.18□□□□□ -1.74
SCFD1-221ENST00000556534 DUX3Q96PT4 197 aa4.18□□□□□ -1.74
SCFD1-221ENST00000556534 ABHD1Q96SE0 405 aa4.18□□□□□ -1.74
SCFD1-221ENST00000556534 LITAFQ99732 161 aa4.18□□□□□ -1.74
SCFD1-221ENST00000556534 FSD1Q9BTV5 496 aa4.18□□□□□ -1.74
SCFD1-221ENST00000556534 VN1R1Q9GZP7 353 aa4.18□□□□□ -1.74
SCFD1-221ENST00000556534 ARRDC1-AS1Q9H2J1 176 aa4.18□□□□□ -1.74
SCFD1-221ENST00000556534 SCRT2Q9NQ03 307 aa4.18□□□□□ -1.74
SCFD1-221ENST00000556534 DDX43Q9NXZ2 648 aaKnown RBP4.18□□□□□ -1.74
SCFD1-221ENST00000556534 SLC7A7Q9UM01 511 aa4.18□□□□□ -1.74
SCFD1-221ENST00000556534 GRIP1Q9Y3R0 1128 aa4.18□□□□□ -1.74
SCFD1-221ENST00000556534 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP4.18□□□□□ -1.743e-6■□□□□ 10.2
SCFD1-221ENST00000556534 A0A1W2PRB8 838 aa4.17□□□□□ -1.74
SCFD1-221ENST00000556534 E9PI62 339 aa4.17□□□□□ -1.74
SCFD1-221ENST00000556534 TPOP07202 933 aa4.17□□□□□ -1.74
SCFD1-221ENST00000556534 PRSS56P0CW18 603 aa4.17□□□□□ -1.74
SCFD1-221ENST00000556534 ADAM5Q6NVV9 412 aa4.17□□□□□ -1.74
SCFD1-221ENST00000556534 ARHGAP11AQ6P4F7 1023 aa4.17□□□□□ -1.74
SCFD1-221ENST00000556534 CORO6Q6QEF8 472 aa4.17□□□□□ -1.74
SCFD1-221ENST00000556534 C15orf39Q6ZRI6 1047 aa4.17□□□□□ -1.74
SCFD1-221ENST00000556534 DNAAF5Q86Y56 855 aa4.17□□□□□ -1.74
SCFD1-221ENST00000556534 MCUQ8NE86 351 aa4.17□□□□□ -1.74
SCFD1-221ENST00000556534 OR10S1Q8NGN2 331 aa4.17□□□□□ -1.74
SCFD1-221ENST00000556534 LGALS12Q96DT0 336 aa4.17□□□□□ -1.74
SCFD1-221ENST00000556534 MYADMQ96S97 322 aa4.17□□□□□ -1.74
SCFD1-221ENST00000556534 RHNO1Q9BSD3 238 aa4.17□□□□□ -1.74
SCFD1-221ENST00000556534 RBM4Q9BWF3 364 aaKnown RBP4.17□□□□□ -1.74
SCFD1-221ENST00000556534 SIX2Q9NPC8 291 aa4.17□□□□□ -1.74
SCFD1-221ENST00000556534 CRNNQ9UBG3 495 aaPredicted RBP4.17□□□□□ -1.74
SCFD1-221ENST00000556534 ERRFI1Q9UJM3 462 aaPredicted RBP4.17□□□□□ -1.74
SCFD1-221ENST00000556534 OSGIN1Q9UJX0 560 aa4.17□□□□□ -1.74
SCFD1-221ENST00000556534 RPS6KA6Q9UK32 745 aa4.17□□□□□ -1.74
SCFD1-221ENST00000556534 A0A0G2JLW4 131 aa4.16□□□□□ -1.74
SCFD1-221ENST00000556534 HYKKA2RU49 373 aa4.16□□□□□ -1.74
SCFD1-221ENST00000556534 ANKUB1A6NFN9 424 aa4.16□□□□□ -1.74
SCFD1-221ENST00000556534 A6NL46 340 aa4.16□□□□□ -1.74
SCFD1-221ENST00000556534 ERAL1O75616 437 aaKnown RBP4.16□□□□□ -1.74
SCFD1-221ENST00000556534 NADKO95544 446 aaPredicted RBP4.16□□□□□ -1.74
SCFD1-221ENST00000556534 CD48P09326 243 aa4.16□□□□□ -1.74
SCFD1-221ENST00000556534 GJA1P17302 382 aa4.16□□□□□ -1.74
SCFD1-221ENST00000556534 NNMTP40261 264 aa4.16□□□□□ -1.74
SCFD1-221ENST00000556534 GNB1P62873 340 aa4.16□□□□□ -1.74
SCFD1-221ENST00000556534 CX3CL1P78423 397 aa4.16□□□□□ -1.74
SCFD1-221ENST00000556534 TMEM30BQ3MIR4 351 aa4.16□□□□□ -1.74
SCFD1-221ENST00000556534 WDR78Q5VTH9 848 aa4.16□□□□□ -1.74
SCFD1-221ENST00000556534 TMPRSS11FQ6ZWK6 438 aa4.16□□□□□ -1.74
SCFD1-221ENST00000556534 ENOSF1Q7L5Y1 443 aa4.16□□□□□ -1.74
SCFD1-221ENST00000556534 ZNF595Q8IYB9 648 aa4.16□□□□□ -1.74
SCFD1-221ENST00000556534 TRIML1Q8N9V2 468 aa4.16□□□□□ -1.74
SCFD1-221ENST00000556534 APPL2Q8NEU8 664 aa4.16□□□□□ -1.74
SCFD1-221ENST00000556534 GRHL3Q8TE85 626 aa4.16□□□□□ -1.74
SCFD1-221ENST00000556534 RNF128Q8TEB7 428 aa4.16□□□□□ -1.74
SCFD1-221ENST00000556534 TMEM190Q8WZ59 177 aa4.16□□□□□ -1.74
SCFD1-221ENST00000556534 MS4A10Q96PG2 267 aa4.16□□□□□ -1.74
SCFD1-221ENST00000556534 BTBD10Q9BSF8 475 aa4.16□□□□□ -1.74
SCFD1-221ENST00000556534 LMF2Q9BU23 707 aaKnown RBP4.16□□□□□ -1.74
SCFD1-221ENST00000556534 FNDC11Q9BVV2 318 aa4.16□□□□□ -1.74
SCFD1-221ENST00000556534 TBC1D17Q9HA65 648 aa4.16□□□□□ -1.74
SCFD1-221ENST00000556534 C2orf42Q9NWW7 574 aa4.16□□□□□ -1.74
SCFD1-221ENST00000556534 TUBE1Q9UJT0 475 aa4.16□□□□□ -1.74
SCFD1-221ENST00000556534 C2CD2Q9Y426 696 aa4.16□□□□□ -1.74
SCFD1-221ENST00000556534 PASKQ96RG2 1323 aa4.16□□□□□ -1.74
SCFD1-221ENST00000556534 TMEM221A6NGB7 291 aa4.15□□□□□ -1.75
SCFD1-221ENST00000556534 DNM1LO00429 736 aa4.15□□□□□ -1.75
SCFD1-221ENST00000556534 GAPDHSO14556 408 aaPredicted RBP4.15□□□□□ -1.75
SCFD1-221ENST00000556534 CLIC2O15247 247 aa4.15□□□□□ -1.75
SCFD1-221ENST00000556534 STARD3NLO95772 234 aa4.15□□□□□ -1.75
SCFD1-221ENST00000556534 WDPCPO95876 746 aa4.15□□□□□ -1.75
SCFD1-221ENST00000556534 FRMD6-AS1P0C7T7 363 aa4.15□□□□□ -1.75
SCFD1-221ENST00000556534 NR2F1P10589 423 aa4.15□□□□□ -1.75
SCFD1-221ENST00000556534 GNB3P16520 340 aa4.15□□□□□ -1.75
SCFD1-221ENST00000556534 ITGA3P26006 1051 aa4.15□□□□□ -1.75
SCFD1-221ENST00000556534 ATP12AP54707 1039 aa4.15□□□□□ -1.75
SCFD1-221ENST00000556534 CDH11P55287 796 aa4.15□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms