RNA–Protein interactions for RNA: ENST00000550914.6

PTCH1-221, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-221ENST00000550914 POLBP06746 335 aa12.48□□□□□ -0.41
PTCH1-221ENST00000550914 CAPN1P07384 714 aa12.48□□□□□ -0.41
PTCH1-221ENST00000550914 GSTM1P09488 218 aa12.48□□□□□ -0.41
PTCH1-221ENST00000550914 ATP1B2P14415 290 aaPredicted RBP12.48□□□□□ -0.41
PTCH1-221ENST00000550914 ITGALP20701 1170 aa12.48□□□□□ -0.41
PTCH1-221ENST00000550914 CYP2A7P20853 494 aa12.48□□□□□ -0.41
PTCH1-221ENST00000550914 PRDX3P30048 256 aaKnown RBP12.48□□□□□ -0.41
PTCH1-221ENST00000550914 HADHAP40939 763 aa12.48□□□□□ -0.41
PTCH1-221ENST00000550914 PREPP48147 710 aa12.48□□□□□ -0.41
PTCH1-221ENST00000550914 ARCN1P48444 511 aaKnown RBP12.48□□□□□ -0.41
PTCH1-221ENST00000550914 COPS2P61201 443 aa12.48□□□□□ -0.41
PTCH1-221ENST00000550914 GSTM4Q03013 218 aa12.48□□□□□ -0.41
PTCH1-221ENST00000550914 RPA4Q13156 261 aa12.48□□□□□ -0.41
PTCH1-221ENST00000550914 PTPRCAPQ14761 206 aa12.48□□□□□ -0.41
PTCH1-221ENST00000550914 LLGL1Q15334 1064 aa12.48□□□□□ -0.41
PTCH1-221ENST00000550914 INPP5JQ15735 1006 aaPredicted RBP12.48□□□□□ -0.41
PTCH1-221ENST00000550914 GPR33Q49SQ1 333 aa12.48□□□□□ -0.41
PTCH1-221ENST00000550914 ZNF789Q5FWF6 425 aa12.48□□□□□ -0.41
PTCH1-221ENST00000550914 C11orf63Q6NUN7 778 aa12.48□□□□□ -0.41
PTCH1-221ENST00000550914 JMJD6Q6NYC1 403 aaPredicted RBP12.48□□□□□ -0.41
PTCH1-221ENST00000550914 FAM198BQ6UWH4 519 aa12.48□□□□□ -0.41
PTCH1-221ENST00000550914 SNX20Q7Z614 316 aa12.48□□□□□ -0.41
PTCH1-221ENST00000550914 DAAM2Q86T65 1068 aa12.48□□□□□ -0.41
PTCH1-221ENST00000550914 CCDC50Q8IVM0 306 aa12.48□□□□□ -0.41
PTCH1-221ENST00000550914 SYTL1Q8IYJ3 562 aa12.48□□□□□ -0.41
PTCH1-221ENST00000550914 OR1L3Q8NH93 324 aa12.48□□□□□ -0.41
PTCH1-221ENST00000550914 SSC4DQ8WTU2 575 aa12.48□□□□□ -0.41
PTCH1-221ENST00000550914 PNPLA2Q96AD5 504 aa12.48□□□□□ -0.41
PTCH1-221ENST00000550914 HAUS1Q96CS2 278 aa12.48□□□□□ -0.41
PTCH1-221ENST00000550914 PPM1MQ96MI6 270 aa12.48□□□□□ -0.41
PTCH1-221ENST00000550914 IP6K3Q96PC2 410 aa12.48□□□□□ -0.41
PTCH1-221ENST00000550914 COPS8Q99627 209 aa12.48□□□□□ -0.41
PTCH1-221ENST00000550914 C17orf62Q9BQA9 187 aa12.48□□□□□ -0.41
PTCH1-221ENST00000550914 DHRS4Q9BTZ2 278 aa12.48□□□□□ -0.41
PTCH1-221ENST00000550914 SLC29A3Q9BZD2 475 aa12.48□□□□□ -0.41
PTCH1-221ENST00000550914 OR52A5Q9H2C5 316 aa12.48□□□□□ -0.41
PTCH1-221ENST00000550914 MVB12BQ9H7P6 319 aa12.48□□□□□ -0.41
PTCH1-221ENST00000550914 VPS37BQ9H9H4 285 aa12.48□□□□□ -0.41
PTCH1-221ENST00000550914 PCMTD2Q9NV79 361 aa12.48□□□□□ -0.41
PTCH1-221ENST00000550914 FEZ2Q9UHY8 353 aaPredicted RBP12.48□□□□□ -0.41
PTCH1-221ENST00000550914 CRLS1Q9UJA2 301 aa12.48□□□□□ -0.41
PTCH1-221ENST00000550914 EFR3BQ9Y2G0 817 aa12.48□□□□□ -0.41
PTCH1-221ENST00000550914 PCM1Q15154 2024 aa12.48□□□□□ -0.41
PTCH1-221ENST00000550914 GSAPA4D1B5 854 aa12.47□□□□□ -0.41
PTCH1-221ENST00000550914 H7C0C1 242 aa12.47□□□□□ -0.41
PTCH1-221ENST00000550914 IFRD1O00458 451 aaPredicted RBP12.47□□□□□ -0.41
PTCH1-221ENST00000550914 BTN3A1O00481 513 aa12.47□□□□□ -0.41
PTCH1-221ENST00000550914 ZNF189O75820 626 aaPredicted RBP12.47□□□□□ -0.41
PTCH1-221ENST00000550914 STK10O94804 968 aaKnown RBP12.47□□□□□ -0.41
PTCH1-221ENST00000550914 DDAH2O95865 285 aa12.47□□□□□ -0.41
PTCH1-221ENST00000550914 ST6GAL1P15907 406 aa12.47□□□□□ -0.41
PTCH1-221ENST00000550914 RBL1P28749 1068 aa12.47□□□□□ -0.41
PTCH1-221ENST00000550914 ATP5OP48047 213 aa12.47□□□□□ -0.41
PTCH1-221ENST00000550914 ZNF140P52738 457 aaPredicted RBP12.47□□□□□ -0.41
PTCH1-221ENST00000550914 ITGA1P56199 1179 aa12.47□□□□□ -0.41
PTCH1-221ENST00000550914 MSLNQ13421 630 aaPredicted RBP12.47□□□□□ -0.41
PTCH1-221ENST00000550914 PRPSAP1Q14558 356 aa12.47□□□□□ -0.41
PTCH1-221ENST00000550914 NCF4Q15080 339 aa12.47□□□□□ -0.41
PTCH1-221ENST00000550914 ZNF658BQ4V348 819 aaPredicted RBP12.47□□□□□ -0.41
PTCH1-221ENST00000550914 PRAMEF17Q5VTA0 474 aa12.47□□□□□ -0.41
PTCH1-221ENST00000550914 LCN10Q6JVE6 187 aa12.47□□□□□ -0.41
PTCH1-221ENST00000550914 ZNF449Q6P9G9 518 aa12.47□□□□□ -0.41
PTCH1-221ENST00000550914 FBXO38Q6PIJ6 1188 aa12.47□□□□□ -0.41
PTCH1-221ENST00000550914 SARM1Q6SZW1 724 aa12.47□□□□□ -0.41
PTCH1-221ENST00000550914 RAB43Q86YS6 212 aa12.47□□□□□ -0.41
PTCH1-221ENST00000550914 LILRA3Q8N6C8 439 aaPredicted RBP12.47□□□□□ -0.41
PTCH1-221ENST00000550914 FDCSPQ8NFU4 85 aa12.47□□□□□ -0.41
PTCH1-221ENST00000550914 SMAD5Q99717 465 aaKnown RBP12.47□□□□□ -0.41
PTCH1-221ENST00000550914 CHRNA10Q9GZZ6 450 aa12.47□□□□□ -0.41
PTCH1-221ENST00000550914 COG4Q9H9E3 785 aa12.47□□□□□ -0.41
PTCH1-221ENST00000550914 ARNT2Q9HBZ2 717 aa12.47□□□□□ -0.41
PTCH1-221ENST00000550914 SLAMF7Q9NQ25 335 aa12.47□□□□□ -0.41
PTCH1-221ENST00000550914 GPR83Q9NYM4 423 aa12.47□□□□□ -0.41
PTCH1-221ENST00000550914 C5AR2Q9P296 337 aa12.47□□□□□ -0.41
PTCH1-221ENST00000550914 FAM8A1Q9UBU6 413 aa12.47□□□□□ -0.41
PTCH1-221ENST00000550914 PADI2Q9Y2J8 665 aa12.47□□□□□ -0.41
PTCH1-221ENST00000550914 ABCA12Q86UK0 2595 aa12.47□□□□□ -0.41
PTCH1-221ENST00000550914 MDC1Q14676 2089 aaKnown RBP12.47□□□□□ -0.41
PTCH1-221ENST00000550914 NUP210LQ5VU65 1888 aa12.46□□□□□ -0.41
PTCH1-221ENST00000550914 DIDO1Q9BTC0 2240 aaKnown RBP12.46□□□□□ -0.41
PTCH1-221ENST00000550914 DOCK10Q96BY6 2186 aa12.46□□□□□ -0.41
PTCH1-221ENST00000550914 TRBV5-4A0A0C4DH59 114 aa12.46□□□□□ -0.41
PTCH1-221ENST00000550914 CCDC66A2RUB6 948 aa12.46□□□□□ -0.41
PTCH1-221ENST00000550914 C2orf74A8MZ97 194 aa12.46□□□□□ -0.41
PTCH1-221ENST00000550914 C9J4A7 227 aa12.46□□□□□ -0.41
PTCH1-221ENST00000550914 E7EQ34 232 aa12.46□□□□□ -0.41
PTCH1-221ENST00000550914 BTN3A3O00478 584 aa12.46□□□□□ -0.41
PTCH1-221ENST00000550914 LCA5LO95447 670 aa12.46□□□□□ -0.41
PTCH1-221ENST00000550914 IGHEP01854 428 aa12.46□□□□□ -0.41
PTCH1-221ENST00000550914 CD63P08962 238 aa12.46□□□□□ -0.41
PTCH1-221ENST00000550914 PTMSP20962 102 aa12.46□□□□□ -0.41
PTCH1-221ENST00000550914 PTPN7P35236 360 aa12.46□□□□□ -0.41
PTCH1-221ENST00000550914 MARCKSL1P49006 195 aa12.46□□□□□ -0.41
PTCH1-221ENST00000550914 ANKRD20A2Q5SQ80 823 aa12.46□□□□□ -0.41
PTCH1-221ENST00000550914 ANKRD20A1Q5TYW2 823 aa12.46□□□□□ -0.41
PTCH1-221ENST00000550914 ANKRD20A3Q5VUR7 823 aa12.46□□□□□ -0.41
PTCH1-221ENST00000550914 ZNF385CQ66K41 422 aaPredicted RBP12.46□□□□□ -0.41
PTCH1-221ENST00000550914 SLC6A19Q695T7 634 aa12.46□□□□□ -0.41
PTCH1-221ENST00000550914 AMIGO1Q86WK6 493 aa12.46□□□□□ -0.41
PTCH1-221ENST00000550914 CDKL3Q8IVW4 592 aaPredicted RBP12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms