RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 IL17CQ9P0M4 197 aa11.26□□□□□ -0.61
CLSTN3-209ENST00000539982 IFT80Q9P2H3 777 aaPredicted RBP11.26□□□□□ -0.61
CLSTN3-209ENST00000539982 NDOR1Q9UHB4 597 aa11.26□□□□□ -0.61
CLSTN3-209ENST00000539982 KLF2Q9Y5W3 355 aaPredicted RBP11.26□□□□□ -0.61
CLSTN3-209ENST00000539982 HEBP2Q9Y5Z4 205 aa11.26□□□□□ -0.61
CLSTN3-209ENST00000539982 ITPR3Q14573 2671 aa11.26□□□□□ -0.61
CLSTN3-209ENST00000539982 CCDC88CQ9P219 2028 aa11.26□□□□□ -0.61
CLSTN3-209ENST00000539982 ZGRF1Q86YA3 2104 aa11.26□□□□□ -0.61
CLSTN3-209ENST00000539982 TACC2O95359 2948 aa11.25□□□□□ -0.61
CLSTN3-209ENST00000539982 LOC285095A0A1B0GVY8 99 aa11.25□□□□□ -0.61
CLSTN3-209ENST00000539982 CCDC66A2RUB6 948 aa11.25□□□□□ -0.61
CLSTN3-209ENST00000539982 AGPSO00116 658 aa11.25□□□□□ -0.61
CLSTN3-209ENST00000539982 BTN3A3O00478 584 aa11.25□□□□□ -0.61
CLSTN3-209ENST00000539982 GPR39O43194 453 aa11.25□□□□□ -0.61
CLSTN3-209ENST00000539982 PMPCBO75439 489 aa11.25□□□□□ -0.61
CLSTN3-209ENST00000539982 POLBP06746 335 aa11.25□□□□□ -0.61
CLSTN3-209ENST00000539982 MSH3P20585 1137 aa11.25□□□□□ -0.61
CLSTN3-209ENST00000539982 PTGER4P35408 488 aa11.25□□□□□ -0.61
CLSTN3-209ENST00000539982 CDC16Q13042 620 aa11.25□□□□□ -0.61
CLSTN3-209ENST00000539982 ZNF169Q14929 603 aaPredicted RBP11.25□□□□□ -0.61
CLSTN3-209ENST00000539982 C1orf189Q5VU69 101 aa11.25□□□□□ -0.61
CLSTN3-209ENST00000539982 AGAP7PQ5VUJ5 663 aa11.25□□□□□ -0.61
CLSTN3-209ENST00000539982 B3GNTL1Q67FW5 361 aaPredicted RBP11.25□□□□□ -0.61
CLSTN3-209ENST00000539982 FCRL6Q6DN72 434 aa11.25□□□□□ -0.61
CLSTN3-209ENST00000539982 RHBDD2Q6NTF9 364 aa11.25□□□□□ -0.61
CLSTN3-209ENST00000539982 MRPL14Q6P1L8 145 aaKnown RBP11.25□□□□□ -0.61
CLSTN3-209ENST00000539982 DET1Q7L5Y6 550 aa11.25□□□□□ -0.61
CLSTN3-209ENST00000539982 GDF7Q7Z4P5 450 aa11.25□□□□□ -0.61
CLSTN3-209ENST00000539982 CFAP206Q8IYR0 622 aa11.25□□□□□ -0.61
CLSTN3-209ENST00000539982 PLD5Q8N7P1 536 aa11.25□□□□□ -0.61
CLSTN3-209ENST00000539982 N4BP2L2Q92802 583 aaPredicted RBP11.25□□□□□ -0.61
CLSTN3-209ENST00000539982 RMDN2Q96LZ7 410 aa11.25□□□□□ -0.61
CLSTN3-209ENST00000539982 AGAP4Q96P64 663 aa11.25□□□□□ -0.61
CLSTN3-209ENST00000539982 GBP5Q96PP8 586 aa11.25□□□□□ -0.61
CLSTN3-209ENST00000539982 ANP32EQ9BTT0 268 aa11.25□□□□□ -0.61
CLSTN3-209ENST00000539982 AP1M1Q9BXS5 423 aa11.25□□□□□ -0.61
CLSTN3-209ENST00000539982 KLHL25Q9H0H3 589 aa11.25□□□□□ -0.61
CLSTN3-209ENST00000539982 GLOD4Q9HC38 313 aa11.25□□□□□ -0.61
CLSTN3-209ENST00000539982 RTN4Q9NQC3 1192 aaKnown RBP11.25□□□□□ -0.61
CLSTN3-209ENST00000539982 SMOXQ9NWM0 555 aa11.25□□□□□ -0.61
CLSTN3-209ENST00000539982 HACD3Q9P035 362 aa11.25□□□□□ -0.61
CLSTN3-209ENST00000539982 HEY1Q9Y5J3 304 aa11.25□□□□□ -0.61
CLSTN3-209ENST00000539982 NF1P21359 2839 aa11.25□□□□□ -0.61
CLSTN3-209ENST00000539982 ZFHX3Q15911 3703 aa11.24□□□□□ -0.61
CLSTN3-209ENST00000539982 C2orf74A8MZ97 194 aa11.24□□□□□ -0.61
CLSTN3-209ENST00000539982 H3BMH7 237 aa11.24□□□□□ -0.61
CLSTN3-209ENST00000539982 BTN3A1O00481 513 aa11.24□□□□□ -0.61
CLSTN3-209ENST00000539982 GAPDHSO14556 408 aaPredicted RBP11.24□□□□□ -0.61
CLSTN3-209ENST00000539982 CNOT3O75175 753 aaKnown RBP11.24□□□□□ -0.61
CLSTN3-209ENST00000539982 OR2B3O76000 313 aa11.24□□□□□ -0.61
CLSTN3-209ENST00000539982 EPOP01588 193 aa11.24□□□□□ -0.61
CLSTN3-209ENST00000539982 UMODP07911 640 aa11.24□□□□□ -0.61
CLSTN3-209ENST00000539982 PVRP15151 417 aa11.24□□□□□ -0.61
CLSTN3-209ENST00000539982 KDELR1P24390 212 aa11.24□□□□□ -0.61
CLSTN3-209ENST00000539982 AKT1P31749 480 aa11.24□□□□□ -0.61
CLSTN3-209ENST00000539982 TAS2R40P59535 323 aa11.24□□□□□ -0.61
CLSTN3-209ENST00000539982 PDK1Q15118 436 aa11.24□□□□□ -0.61
CLSTN3-209ENST00000539982 TLR1Q15399 786 aa11.24□□□□□ -0.61
CLSTN3-209ENST00000539982 KRTAP21-3Q3LHN1 58 aa11.24□□□□□ -0.61
CLSTN3-209ENST00000539982 TEX44Q53QW1 395 aa11.24□□□□□ -0.61
CLSTN3-209ENST00000539982 PRAMEF13Q5VWM6 474 aa11.24□□□□□ -0.61
CLSTN3-209ENST00000539982 CPNE8Q86YQ8 564 aa11.24□□□□□ -0.61
CLSTN3-209ENST00000539982 PARP9Q8IXQ6 854 aa11.24□□□□□ -0.61
CLSTN3-209ENST00000539982 PROKR1Q8TCW9 393 aa11.24□□□□□ -0.61
CLSTN3-209ENST00000539982 ZNF398Q8TD17 642 aa11.24□□□□□ -0.61
CLSTN3-209ENST00000539982 RAPGEF5Q92565 580 aa11.24□□□□□ -0.61
CLSTN3-209ENST00000539982 LINC00615Q96LM1 132 aaPredicted RBP11.24□□□□□ -0.61
CLSTN3-209ENST00000539982 FERD3LQ96RJ6 166 aa11.24□□□□□ -0.61
CLSTN3-209ENST00000539982 SLX1AQ9BQ83 275 aa11.24□□□□□ -0.61
CLSTN3-209ENST00000539982 SPRTNQ9H040 489 aaPredicted RBP11.24□□□□□ -0.61
CLSTN3-209ENST00000539982 TFB2MQ9H5Q4 396 aaKnown RBP11.24□□□□□ -0.61
CLSTN3-209ENST00000539982 ANO10Q9NW15 660 aa11.24□□□□□ -0.61
CLSTN3-209ENST00000539982 UBP1Q9NZI7 540 aa11.24□□□□□ -0.61
CLSTN3-209ENST00000539982 FAM8A1Q9UBU6 413 aa11.24□□□□□ -0.61
CLSTN3-209ENST00000539982 ITGB1BP2Q9UKP3 347 aa11.24□□□□□ -0.61
CLSTN3-209ENST00000539982 CDYLQ9Y232 598 aa11.24□□□□□ -0.61
CLSTN3-209ENST00000539982 FER1L5A0AVI2 2057 aa11.24□□□□□ -0.61
CLSTN3-209ENST00000539982 SVILO95425 2214 aa11.23□□□□□ -0.61
CLSTN3-209ENST00000539982 A0A0A6YYK5 440 aaPredicted RBP11.23□□□□□ -0.61
CLSTN3-209ENST00000539982 BUD23O43709 281 aaKnown RBP11.23□□□□□ -0.61
CLSTN3-209ENST00000539982 JRKO75564 520 aa11.23□□□□□ -0.61
CLSTN3-209ENST00000539982 PROSCO94903 275 aa11.23□□□□□ -0.61
CLSTN3-209ENST00000539982 FOXL2P58012 376 aa11.23□□□□□ -0.61
CLSTN3-209ENST00000539982 OTUD4Q01804 1114 aaKnown RBP11.23□□□□□ -0.61
CLSTN3-209ENST00000539982 NKAIN1Q4KMZ8 207 aa11.23□□□□□ -0.61
CLSTN3-209ENST00000539982 BCL7AQ4VC05 210 aa11.23□□□□□ -0.61
CLSTN3-209ENST00000539982 SIRPB2Q5JXA9 342 aa11.23□□□□□ -0.61
CLSTN3-209ENST00000539982 RPUSD3Q6P087 351 aaKnown RBP11.23□□□□□ -0.61
CLSTN3-209ENST00000539982 SASS6Q6UVJ0 657 aa11.23□□□□□ -0.61
CLSTN3-209ENST00000539982 FAM180AQ6UWF9 173 aa11.23□□□□□ -0.61
CLSTN3-209ENST00000539982 RBM43Q6ZSC3 357 aaKnown RBP11.23□□□□□ -0.61
CLSTN3-209ENST00000539982 AMIGO1Q86WK6 493 aa11.23□□□□□ -0.61
CLSTN3-209ENST00000539982 LILRA3Q8N6C8 439 aaPredicted RBP11.23□□□□□ -0.61
CLSTN3-209ENST00000539982 BCORP1Q8N888 145 aa11.23□□□□□ -0.61
CLSTN3-209ENST00000539982 ITLN2Q8WWU7 325 aaPredicted RBP11.23□□□□□ -0.61
CLSTN3-209ENST00000539982 CNDP1Q96KN2 507 aa11.23□□□□□ -0.61
CLSTN3-209ENST00000539982 FAM60AQ9NP50 221 aa11.23□□□□□ -0.61
CLSTN3-209ENST00000539982 SLC6A20Q9NP91 592 aa11.23□□□□□ -0.61
CLSTN3-209ENST00000539982 CHST11Q9NPF2 352 aa11.23□□□□□ -0.61
CLSTN3-209ENST00000539982 OLAHQ9NV23 265 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms