RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 ANGPTL1O95841 491 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 CST3P01034 146 aaPredicted RBP6.59□□□□□ -1.35
USP28-207ENST00000538475 PGK2P07205 417 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 CELA3AP09093 270 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 LTA4HP09960 611 aaKnown RBP6.59□□□□□ -1.35
USP28-207ENST00000538475 ACADMP11310 421 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 NCF1P14598 390 aaPredicted RBP6.59□□□□□ -1.35
USP28-207ENST00000538475 CD1EP15812 388 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 MSH3P20585 1137 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 CYP2B6P20813 491 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 CYP2A7P20853 494 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 HMGB2P26583 209 aaKnown RBP6.59□□□□□ -1.35
USP28-207ENST00000538475 RPL10P27635 214 aaKnown RBP6.59□□□□□ -1.35
USP28-207ENST00000538475 HLA-FP30511 346 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 OXTRP30559 389 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 IL12RB1P42701 662 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 YAP1P46937 504 aaKnown RBP6.59□□□□□ -1.35
USP28-207ENST00000538475 RPL34P49207 117 aaKnown RBP6.59□□□□□ -1.35
USP28-207ENST00000538475 CLCN5P51795 746 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 SLC12A2P55011 1212 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 KCNK10P57789 538 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 PURAQ00577 322 aaKnown RBP6.59□□□□□ -1.35
USP28-207ENST00000538475 IRF9Q00978 393 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 GBE1Q04446 702 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 CDH17Q12864 832 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 CDK5R2Q13319 367 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 RCAN2Q14206 197 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 GRM3Q14832 879 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 EMC2Q15006 297 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 RPS6KA2Q15349 733 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 GEN1Q17RS7 908 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 CYP27C1Q4G0S4 372 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 TECRLQ5HYJ1 363 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 PCID2Q5JVF3 399 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 LDLRAP1Q5SW96 308 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 TSTD2Q5T7W7 516 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 NCBP2-AS2Q69YL0 99 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 OR6B2Q6IFH4 312 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 SULT1C3Q6IMI6 304 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 CCSAPQ6IQ19 270 aaPredicted RBP6.59□□□□□ -1.35
USP28-207ENST00000538475 DENND5AQ6IQ26 1287 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 CAPN13Q6MZZ7 669 aaPredicted RBP6.59□□□□□ -1.35
USP28-207ENST00000538475 CNSTQ6PJW8 725 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 OGFOD3Q6PK18 319 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 ZNF782Q6ZMW2 699 aaPredicted RBP6.59□□□□□ -1.35
USP28-207ENST00000538475 GDPD3Q7L5L3 318 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 STK32CQ86UX6 486 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 TSPYL5Q86VY4 417 aaPredicted RBP6.59□□□□□ -1.35
USP28-207ENST00000538475 ZFPM1Q8IX07 1006 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 EID3Q8N140 333 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 OR8J3Q8NGG0 315 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 LHFPL5Q8TAF8 219 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 C9orf43Q8TAL5 461 aaPredicted RBP6.59□□□□□ -1.35
USP28-207ENST00000538475 AGR3Q8TD06 166 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 MCOLN3Q8TDD5 553 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 KCTD4Q8WVF5 259 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 FIG4Q92562 907 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 HTRA1Q92743 480 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 DDX17Q92841 729 aaKnown RBP6.59□□□□□ -1.35
USP28-207ENST00000538475 C19orf60Q96EN9 201 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 P2RY11Q96G91 374 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 CRELD1Q96HD1 420 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 RNF170Q96K19 258 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 C1orf74Q96LT6 269 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 SIGLEC11Q96RL6 698 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 SLC9A7Q96T83 725 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 RAD9AQ99638 391 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 IL12RB2Q99665 862 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 ITPAQ9BY32 194 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 BRINP2Q9C0B6 783 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 PLEKHA5Q9HAU0 1116 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 POPDC3Q9HBV1 291 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 NGRNQ9NPE2 291 aaKnown RBP6.59□□□□□ -1.35
USP28-207ENST00000538475 SLC52A3Q9NQ40 469 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 IARS2Q9NSE4 1012 aaKnown RBP6.59□□□□□ -1.35
USP28-207ENST00000538475 FAM49BQ9NUQ9 324 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 GIMAP4Q9NUV9 329 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 OPTCQ9UBM4 332 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 SFMBT1Q9UHJ3 866 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 PHF11Q9UIL8 331 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 FBXO9Q9UK97 447 aaPredicted RBP6.59□□□□□ -1.35
USP28-207ENST00000538475 CPSF3Q9UKF6 684 aaKnown RBP6.59□□□□□ -1.35
USP28-207ENST00000538475 SNX7Q9UNH6 387 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 CYP8B1Q9UNU6 501 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 USP22Q9UPT9 525 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 CFL2Q9Y281 166 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 KLK4Q9Y5K2 254 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 CSADQ9Y600 493 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 AUP1Q9Y679 476 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 OAS3Q9Y6K5 1087 aaKnown RBP6.59□□□□□ -1.35
USP28-207ENST00000538475 LOC285556D6RIA3 1793 aa6.59□□□□□ -1.35
USP28-207ENST00000538475 COL16A1Q07092 1604 aaPredicted RBP6.58□□□□□ -1.36
USP28-207ENST00000538475 ANKRD31Q8N7Z5 1873 aa6.58□□□□□ -1.36
USP28-207ENST00000538475 COL11A1P12107 1806 aaPredicted RBP6.58□□□□□ -1.36
USP28-207ENST00000538475 FAM234BA2RU67 622 aa6.58□□□□□ -1.36
USP28-207ENST00000538475 OR2A25A4D2G3 310 aa6.58□□□□□ -1.36
USP28-207ENST00000538475 LINC00862A6NCI5 91 aa6.58□□□□□ -1.36
USP28-207ENST00000538475 WASH4PA8MWX3 477 aa6.58□□□□□ -1.36
USP28-207ENST00000538475 FAM25EA8MYX2 175 aa6.58□□□□□ -1.36
USP28-207ENST00000538475 NR5A2O00482 541 aa6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms