RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 SLC5A2P31639 672 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 SPAM1P38567 509 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 PURAQ00577 322 aaKnown RBP8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 BORAQ6PGQ7 559 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 PTCHD4Q6ZW05 846 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 CYP4V2Q6ZWL3 525 aaPredicted RBP8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 GOLGA7Q7Z5G4 137 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 SYVN1Q86TM6 617 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 ST13P5Q8NFI4 369 aaPredicted RBP8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 PGAP3Q96FM1 320 aaPredicted RBP8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 CHCHD6Q9BRQ6 235 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 GSTO2Q9H4Y5 243 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 CMTM6Q9NX76 183 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 SCML2Q9UQR0 700 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 ANGPT4Q9Y264 503 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 EFCAB9A8MZ26 197 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 FAM25AB3EWG3 89 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 FAM25CB3EWG5 89 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 FAM25GB3EWG6 89 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 VILLO15195 856 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 IMPDH2P12268 514 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 CD36P16671 472 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 EFNA1P20827 205 aaPredicted RBP8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 OR4D2P58180 307 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 MYBPC3Q14896 1274 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 OR4D1Q15615 310 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 SPANXN4Q5MJ08 99 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 UMODL1-AS1Q8N2C9 162 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 TCAIMQ8N3R3 496 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 CSGALNACT1Q8TDX6 532 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 TMEM40Q8WWA1 233 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 TFAP2CQ92754 450 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 L3HYPDHQ96EM0 354 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 TUBA1CQ9BQE3 449 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 TTPALQ9BTX7 342 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 ZC4H2Q9NQZ6 224 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 MIOSQ9NXC5 875 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 MAGEB17A8MXT2 336 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 TBX1O43435 398 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 SGTAO43765 313 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 CCNKO75909 580 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 EPOP01588 193 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 UGT2B4P06133 528 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 EPORP19235 508 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 GDF5P43026 501 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 GSTM5P46439 218 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 PIGFQ07326 219 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 SMARCB1Q12824 385 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 SERINC3Q13530 473 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 ACOX1Q15067 660 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 ATXN7L2Q5T6C5 722 aaPredicted RBP8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 GPR153Q6NV75 609 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 NIPAL1Q6NVV3 410 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 TRIM40Q6P9F5 258 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 DEFB128Q7Z7B8 93 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 COLGALT2Q8IYK4 626 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 LSMEM2Q8N112 164 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 NLGN2Q8NFZ4 835 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 DNAJB8Q8NHS0 232 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 HDAC2Q92769 488 aaKnown RBP8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 CLP1Q92989 425 aaKnown RBP8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 C1orf74Q96LT6 269 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 Q96MT0 163 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 COPS4Q9BT78 406 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 NLNQ9BYT8 704 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 PRRG3Q9BZD7 231 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 NMUR1Q9HB89 426 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 AMBNQ9NP70 447 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 STMN3Q9NZ72 180 aa8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 WBP11Q9Y2W2 641 aaKnown RBP8.27□□□□□ -1.09
LIMCH1-216ENST00000512820 TCRBV3S1A0A5B6 114 aa8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 PTGESO14684 152 aa8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 SYN3O14994 580 aa8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 PRAMEF11O60813 436 aa8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 CREG1O75629 220 aa8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 CNMDO75829 334 aa8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 PGRP06401 933 aa8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 FDXRP22570 491 aa8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 IL12RB1P42701 662 aa8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 KCNQ1P51787 676 aa8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 KCNAB2Q13303 367 aa8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 CCL14Q16627 93 aa8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 SYT16Q17RD7 645 aa8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 SEZ6LQ9BYH1 1024 aa8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 CCSER2Q9H7U1 834 aa8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 RAB23Q9ULC3 237 aa8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 TESMINQ9Y4I5 508 aa8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 GPC6Q9Y625 555 aaPredicted RBP8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 KCNE2Q9Y6J6 123 aa8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 NHSL1Q5SYE7 1610 aa8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 DNAJC25-GNG10A0A024R161 153 aa8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 PER2O15055 1255 aa8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 EEDO75530 441 aaKnown RBP8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 BCAP31P51572 246 aa8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 NFKB2Q00653 900 aa8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 CHIT1Q13231 466 aa8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 ZBTB6Q15916 424 aa8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 RNF19BQ6ZMZ0 732 aa8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 CYP4Z2PQ8N1L4 340 aa8.26□□□□□ -1.09
LIMCH1-216ENST00000512820 BRI3BPQ8WY22 251 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms