RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 ACP2P11117 423 aa2.27□□□□□ -2.05
NUP54-208ENST00000508604 ZFP36L1Q07352 338 aaKnown RBP2.27□□□□□ -2.05
NUP54-208ENST00000508604 GOLGA8DPQ0D2H9 430 aa2.27□□□□□ -2.05
NUP54-208ENST00000508604 PLA2G7Q13093 441 aa2.27□□□□□ -2.05
NUP54-208ENST00000508604 CAPRIN1Q14444 709 aaKnown RBP2.27□□□□□ -2.05
NUP54-208ENST00000508604 PRICKLE4Q2TBC4 344 aa2.27□□□□□ -2.05
NUP54-208ENST00000508604 LRIF1Q5T3J3 769 aa2.27□□□□□ -2.05
NUP54-208ENST00000508604 NOL8Q76FK4 1167 aaKnown RBP2.27□□□□□ -2.05
NUP54-208ENST00000508604 SLC47A2Q86VL8 602 aa2.27□□□□□ -2.05
NUP54-208ENST00000508604 AZIN2Q96A70 460 aa2.27□□□□□ -2.05
NUP54-208ENST00000508604 HVCN1Q96D96 273 aa2.27□□□□□ -2.05
NUP54-208ENST00000508604 RNF125Q96EQ8 232 aa2.27□□□□□ -2.05
NUP54-208ENST00000508604 UBXN10Q96LJ8 280 aa2.27□□□□□ -2.05
NUP54-208ENST00000508604 MAP7D2Q96T17 732 aa2.27□□□□□ -2.05
NUP54-208ENST00000508604 ATP13A3Q9H7F0 1226 aa2.27□□□□□ -2.05
NUP54-208ENST00000508604 ANGPTL3Q9Y5C1 460 aa2.27□□□□□ -2.05
NUP54-208ENST00000508604 SPIN1Q9Y657 262 aaPredicted RBP2.27□□□□□ -2.05
NUP54-208ENST00000508604 COL4A4P53420 1690 aaPredicted RBP2.27□□□□□ -2.05
NUP54-208ENST00000508604 MPTX1A8MV57 137 aa2.26□□□□□ -2.05
NUP54-208ENST00000508604 SELLP14151 372 aa2.26□□□□□ -2.05
NUP54-208ENST00000508604 GP9P14770 177 aa2.26□□□□□ -2.05
NUP54-208ENST00000508604 MSH2P43246 934 aa2.26□□□□□ -2.05
NUP54-208ENST00000508604 CSTF3Q12996 717 aaKnown RBP2.26□□□□□ -2.05
NUP54-208ENST00000508604 EIF4EBP2Q13542 120 aaPredicted RBP2.26□□□□□ -2.05
NUP54-208ENST00000508604 SOWAHCQ53LP3 525 aaPredicted RBP2.26□□□□□ -2.05
NUP54-208ENST00000508604 GCNT6Q5T4J0 391 aa2.26□□□□□ -2.05
NUP54-208ENST00000508604 Q6ZRP5 223 aa2.26□□□□□ -2.05
NUP54-208ENST00000508604 ZBED8Q8IZ13 594 aa2.26□□□□□ -2.05
NUP54-208ENST00000508604 NKAPQ8N5F7 415 aaKnown RBP2.26□□□□□ -2.05
NUP54-208ENST00000508604 LRRC15Q8TF66 581 aa2.26□□□□□ -2.05
NUP54-208ENST00000508604 MOAP1Q96BY2 351 aa2.26□□□□□ -2.05
NUP54-208ENST00000508604 MTERF3Q96E29 417 aa2.26□□□□□ -2.05
NUP54-208ENST00000508604 CNOT6LQ96LI5 555 aaKnown RBP2.26□□□□□ -2.05
NUP54-208ENST00000508604 AGAP4Q96P64 663 aa2.26□□□□□ -2.05
NUP54-208ENST00000508604 PSMB7Q99436 277 aa2.26□□□□□ -2.05
NUP54-208ENST00000508604 DFFBO76075 338 aa2.25□□□□□ -2.05
NUP54-208ENST00000508604 F9P00740 461 aa2.25□□□□□ -2.05
NUP54-208ENST00000508604 DRD3P35462 400 aa2.25□□□□□ -2.05
NUP54-208ENST00000508604 MTHFRP42898 656 aa2.25□□□□□ -2.05
NUP54-208ENST00000508604 ZFP36L2P47974 494 aaKnown RBP2.25□□□□□ -2.05
NUP54-208ENST00000508604 OLR1P78380 273 aa2.25□□□□□ -2.05
NUP54-208ENST00000508604 RFTN1Q14699 578 aaPredicted RBP2.25□□□□□ -2.05
NUP54-208ENST00000508604 ADCK1Q86TW2 530 aa2.25□□□□□ -2.05
NUP54-208ENST00000508604 GALNT13Q8IUC8 556 aa2.25□□□□□ -2.05
NUP54-208ENST00000508604 OR6S1Q8NH40 331 aa2.25□□□□□ -2.05
NUP54-208ENST00000508604 SMAP2Q8WU79 429 aaPredicted RBP2.25□□□□□ -2.05
NUP54-208ENST00000508604 CENPTQ96BT3 561 aa2.25□□□□□ -2.05
NUP54-208ENST00000508604 INTS12Q96CB8 462 aaKnown RBP2.25□□□□□ -2.05
NUP54-208ENST00000508604 NR1H4Q96RI1 486 aaPredicted RBP2.25□□□□□ -2.05
NUP54-208ENST00000508604 MBNL1Q9NR56 388 aaKnown RBP2.25□□□□□ -2.05
NUP54-208ENST00000508604 PCDHB16Q9NRJ7 776 aa2.25□□□□□ -2.05
NUP54-208ENST00000508604 PLEKHD1A6NEE1 506 aa2.25□□□□□ -2.05
NUP54-208ENST00000508604 E9PI62 339 aa2.25□□□□□ -2.05
NUP54-208ENST00000508604 HCRTR2O43614 444 aa2.25□□□□□ -2.05
NUP54-208ENST00000508604 GPRIN2O60269 458 aa2.25□□□□□ -2.05
NUP54-208ENST00000508604 MELTFP08582 738 aa2.25□□□□□ -2.05
NUP54-208ENST00000508604 CYP2A7P20853 494 aa2.25□□□□□ -2.05
NUP54-208ENST00000508604 MAPK9P45984 424 aa2.25□□□□□ -2.05
NUP54-208ENST00000508604 RPL7AP62424 266 aaKnown RBP2.25□□□□□ -2.05
NUP54-208ENST00000508604 LY6DQ14210 128 aa2.25□□□□□ -2.05
NUP54-208ENST00000508604 XKR3Q5GH77 459 aa2.25□□□□□ -2.05
NUP54-208ENST00000508604 INTS8Q75QN2 995 aaKnown RBP2.25□□□□□ -2.05
NUP54-208ENST00000508604 ZNF354CQ86Y25 554 aa2.25□□□□□ -2.05
NUP54-208ENST00000508604 CEP97Q8IW35 865 aa2.25□□□□□ -2.05
NUP54-208ENST00000508604 GOLGA6L2Q8N9W4 650 aaPredicted RBP2.25□□□□□ -2.05
NUP54-208ENST00000508604 GPRC5AQ8NFJ5 357 aa2.25□□□□□ -2.05
NUP54-208ENST00000508604 VANGL1Q8TAA9 524 aaPredicted RBP2.25□□□□□ -2.05
NUP54-208ENST00000508604 MAPK15Q8TD08 544 aa2.25□□□□□ -2.05
NUP54-208ENST00000508604 TRPC4APQ8TEL6 797 aa2.25□□□□□ -2.05
NUP54-208ENST00000508604 MED20Q9H944 212 aa2.25□□□□□ -2.05
NUP54-208ENST00000508604 PPANQ9NQ55 473 aaKnown RBP2.25□□□□□ -2.05
NUP54-208ENST00000508604 NOL12Q9UGY1 213 aaKnown RBP eCLIP2.25□□□□□ -2.05
NUP54-208ENST00000508604 TSPYL4Q9UJ04 414 aa2.25□□□□□ -2.05
NUP54-208ENST00000508604 CA4P22748 312 aa2.24□□□□□ -2.05
NUP54-208ENST00000508604 LEPRP48357 1165 aaKnown RBP2.24□□□□□ -2.05
NUP54-208ENST00000508604 POU5F1Q01860 360 aaKnown RBP2.24□□□□□ -2.05
NUP54-208ENST00000508604 FHL5Q5TD97 284 aa2.24□□□□□ -2.05
NUP54-208ENST00000508604 C20orf194Q5TEA3 1177 aa2.24□□□□□ -2.05
NUP54-208ENST00000508604 VITQ6UXI7 678 aa2.24□□□□□ -2.05
NUP54-208ENST00000508604 TMEM64Q6YI46 380 aa2.24□□□□□ -2.05
NUP54-208ENST00000508604 KIRREL3Q8IZU9 778 aa2.24□□□□□ -2.05
NUP54-208ENST00000508604 CPSF7Q8N684 471 aaKnown RBP2.24□□□□□ -2.05
NUP54-208ENST00000508604 KCNG4Q8TDN1 519 aa2.24□□□□□ -2.05
NUP54-208ENST00000508604 ZNF582Q96NG8 517 aaPredicted RBP2.24□□□□□ -2.05
NUP54-208ENST00000508604 NDE1Q9NXR1 346 aa2.24□□□□□ -2.05
NUP54-208ENST00000508604 TAS2R10Q9NYW0 307 aa2.24□□□□□ -2.05
NUP54-208ENST00000508604 B4GALT7Q9UBV7 327 aa2.24□□□□□ -2.05
NUP54-208ENST00000508604 POMT2Q9UKY4 750 aa2.24□□□□□ -2.05
NUP54-208ENST00000508604 CYP46A1Q9Y6A2 500 aa2.24□□□□□ -2.05
NUP54-208ENST00000508604 TMEM8BA6NDV4 472 aa2.23□□□□□ -2.05
NUP54-208ENST00000508604 THEGLP0DJG4 465 aa2.23□□□□□ -2.05
NUP54-208ENST00000508604 ACTN1P12814 892 aa2.23□□□□□ -2.05
NUP54-208ENST00000508604 CNTFP26441 200 aa2.23□□□□□ -2.05
NUP54-208ENST00000508604 CAPGP40121 348 aa2.23□□□□□ -2.05
NUP54-208ENST00000508604 TSFMP43897 325 aaKnown RBP2.23□□□□□ -2.05
NUP54-208ENST00000508604 GPR143P51810 404 aa2.23□□□□□ -2.05
NUP54-208ENST00000508604 TMEM115Q12893 351 aaPredicted RBP2.23□□□□□ -2.05
NUP54-208ENST00000508604 C10orf62Q5T681 223 aaPredicted RBP2.23□□□□□ -2.05
NUP54-208ENST00000508604 INO80CQ6PI98 192 aaPredicted RBP2.23□□□□□ -2.05
NUP54-208ENST00000508604 LDHAL6AQ6ZMR3 332 aa2.23□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms