RNA–Protein interactions for RNA: ENST00000504181.1

LSM6-204, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM6, Length 549 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-204ENST00000504181 ZNF160Q9HCG1 818 aa12.07□□□□□ -0.48
LSM6-204ENST00000504181 SLC22A11Q9NSA0 550 aa12.07□□□□□ -0.48
LSM6-204ENST00000504181 PPT2Q9UMR5 302 aa12.07□□□□□ -0.48
LSM6-204ENST00000504181 AP1M2Q9Y6Q5 423 aa12.07□□□□□ -0.48
LSM6-204ENST00000504181 CUBNO60494 3623 aa12.07□□□□□ -0.48
LSM6-204ENST00000504181 HIVEP2P31629 2446 aa12.07□□□□□ -0.48
LSM6-204ENST00000504181 BICDL2A1A5D9 508 aa12.06□□□□□ -0.48
LSM6-204ENST00000504181 RGSL1A5PLK6 1076 aa12.06□□□□□ -0.48
LSM6-204ENST00000504181 H3BMH7 237 aa12.06□□□□□ -0.48
LSM6-204ENST00000504181 HCRTR1O43613 425 aa12.06□□□□□ -0.48
LSM6-204ENST00000504181 MAFKO60675 156 aa12.06□□□□□ -0.48
LSM6-204ENST00000504181 GADD45BO75293 160 aaPredicted RBP12.06□□□□□ -0.48
LSM6-204ENST00000504181 SMC2O95347 1197 aa12.06□□□□□ -0.48
LSM6-204ENST00000504181 PRLP01236 227 aa12.06□□□□□ -0.48
LSM6-204ENST00000504181 SLC4A1P02730 911 aa12.06□□□□□ -0.48
LSM6-204ENST00000504181 CTSBP07858 339 aa12.06□□□□□ -0.48
LSM6-204ENST00000504181 PYGMP11217 842 aa12.06□□□□□ -0.48
LSM6-204ENST00000504181 ABOP16442 354 aa12.06□□□□□ -0.48
LSM6-204ENST00000504181 PRDX3P30048 256 aaKnown RBP12.06□□□□□ -0.48
LSM6-204ENST00000504181 SOX11P35716 441 aa12.06□□□□□ -0.48
LSM6-204ENST00000504181 ZNF143P52747 638 aaPredicted RBP12.06□□□□□ -0.48
LSM6-204ENST00000504181 YBX1P67809 324 aaKnown RBP12.06□□□□□ -0.48
LSM6-204ENST00000504181 TMPRSS15P98073 1019 aa12.06□□□□□ -0.48
LSM6-204ENST00000504181 CACNG1Q06432 222 aa12.06□□□□□ -0.48
LSM6-204ENST00000504181 TFF3Q07654 80 aa12.06□□□□□ -0.48
LSM6-204ENST00000504181 PKP1Q13835 747 aa12.06□□□□□ -0.48
LSM6-204ENST00000504181 NFE2L1Q14494 772 aa12.06□□□□□ -0.48
LSM6-204ENST00000504181 PPP6R3Q5H9R7 873 aaPredicted RBP12.06□□□□□ -0.48
LSM6-204ENST00000504181 SMYD5Q6GMV2 418 aa12.06□□□□□ -0.48
LSM6-204ENST00000504181 TRAM1L1Q8N609 369 aa12.06□□□□□ -0.48
LSM6-204ENST00000504181 ZNF655Q8N720 491 aaPredicted RBP12.06□□□□□ -0.48
LSM6-204ENST00000504181 ACRBPQ8NEB7 543 aa12.06□□□□□ -0.48
LSM6-204ENST00000504181 SUN3Q8TAQ9 357 aa12.06□□□□□ -0.48
LSM6-204ENST00000504181 CCDC110Q8TBZ0 833 aa12.06□□□□□ -0.48
LSM6-204ENST00000504181 BRIX1Q8TDN6 353 aaKnown RBP12.06□□□□□ -0.48
LSM6-204ENST00000504181 NSMCE1Q8WV22 266 aa12.06□□□□□ -0.48
LSM6-204ENST00000504181 GPR137Q96N19 417 aa12.06□□□□□ -0.48
LSM6-204ENST00000504181 LYSMD1Q96S90 227 aa12.06□□□□□ -0.48
LSM6-204ENST00000504181 INSM2Q96T92 566 aaPredicted RBP12.06□□□□□ -0.48
LSM6-204ENST00000504181 NAA15Q9BXJ9 866 aaKnown RBP12.06□□□□□ -0.48
LSM6-204ENST00000504181 TDRD1Q9BXT4 1180 aaKnown RBP12.06□□□□□ -0.48
LSM6-204ENST00000504181 UCK2Q9BZX2 261 aa12.06□□□□□ -0.48
LSM6-204ENST00000504181 VPS16Q9H269 839 aa12.06□□□□□ -0.48
LSM6-204ENST00000504181 SOX17Q9H6I2 414 aaPredicted RBP12.06□□□□□ -0.48
LSM6-204ENST00000504181 KIR3DX1Q9H7L2 352 aa12.06□□□□□ -0.48
LSM6-204ENST00000504181 ZNF395Q9H8N7 513 aaPredicted RBP12.06□□□□□ -0.48
LSM6-204ENST00000504181 LRFN1Q9P244 771 aa12.06□□□□□ -0.48
LSM6-204ENST00000504181 MRPS2Q9Y399 296 aaKnown RBP12.06□□□□□ -0.48
LSM6-204ENST00000504181 E9PLN8 166 aa12.05□□□□□ -0.48
LSM6-204ENST00000504181 ADAM10O14672 748 aa12.05□□□□□ -0.48
LSM6-204ENST00000504181 ZSCAN9O15535 394 aaPredicted RBP12.05□□□□□ -0.48
LSM6-204ENST00000504181 CYP1A1P04798 512 aaPredicted RBP12.05□□□□□ -0.48
LSM6-204ENST00000504181 HOXD4P09016 255 aaPredicted RBP12.05□□□□□ -0.48
LSM6-204ENST00000504181 PBLDP30039 288 aaPredicted RBP12.05□□□□□ -0.48
LSM6-204ENST00000504181 DSC2Q02487 901 aa12.05□□□□□ -0.48
LSM6-204ENST00000504181 PTP4A2Q12974 167 aa12.05□□□□□ -0.48
LSM6-204ENST00000504181 GTF2H3Q13889 308 aa12.05□□□□□ -0.48
LSM6-204ENST00000504181 LCE2DQ5TA82 110 aaPredicted RBP12.05□□□□□ -0.48
LSM6-204ENST00000504181 AMZ2Q86W34 360 aa12.05□□□□□ -0.48
LSM6-204ENST00000504181 DOLPP1Q86YN1 238 aa12.05□□□□□ -0.48
LSM6-204ENST00000504181 PHC2Q8IXK0 858 aa12.05□□□□□ -0.48
LSM6-204ENST00000504181 ATPAF2Q8N5M1 289 aa12.05□□□□□ -0.48
LSM6-204ENST00000504181 THAP3Q8WTV1 239 aaPredicted RBP12.05□□□□□ -0.48
LSM6-204ENST00000504181 PSMF1Q92530 271 aa12.05□□□□□ -0.48
LSM6-204ENST00000504181 ZNF653Q96CK0 615 aa12.05□□□□□ -0.48
LSM6-204ENST00000504181 EID2BQ96D98 161 aa12.05□□□□□ -0.48
LSM6-204ENST00000504181 MCEEQ96PE7 176 aa12.05□□□□□ -0.48
LSM6-204ENST00000504181 SPSB2Q99619 263 aa12.05□□□□□ -0.48
LSM6-204ENST00000504181 VKORC1Q9BQB6 163 aa12.05□□□□□ -0.48
LSM6-204ENST00000504181 GPATCH1Q9BRR8 931 aaKnown RBP12.05□□□□□ -0.48
LSM6-204ENST00000504181 SNRNP25Q9BV90 132 aaKnown RBP12.05□□□□□ -0.48
LSM6-204ENST00000504181 PITPNM3Q9BZ71 974 aa12.05□□□□□ -0.48
LSM6-204ENST00000504181 WWP1Q9H0M0 922 aa12.05□□□□□ -0.48
LSM6-204ENST00000504181 MRM3Q9HC36 420 aaKnown RBP12.05□□□□□ -0.48
LSM6-204ENST00000504181 PCDH9Q9HC56 1237 aa12.05□□□□□ -0.48
LSM6-204ENST00000504181 FAM60AQ9NP50 221 aa12.05□□□□□ -0.48
LSM6-204ENST00000504181 IRAK4Q9NWZ3 460 aa12.05□□□□□ -0.48
LSM6-204ENST00000504181 GTPBP10A4D1E9 387 aaKnown RBP12.04□□□□□ -0.48
LSM6-204ENST00000504181 RNF212BA8MTL3 300 aa12.04□□□□□ -0.48
LSM6-204ENST00000504181 FAM171A2A8MVW0 826 aa12.04□□□□□ -0.48
LSM6-204ENST00000504181 MATN2O00339 956 aa12.04□□□□□ -0.48
LSM6-204ENST00000504181 CTAG2O75638 210 aa12.04□□□□□ -0.48
LSM6-204ENST00000504181 POP7O75817 140 aaKnown RBP12.04□□□□□ -0.48
LSM6-204ENST00000504181 USP1O94782 785 aa12.04□□□□□ -0.48
LSM6-204ENST00000504181 PRAMEF1O95521 474 aa12.04□□□□□ -0.48
LSM6-204ENST00000504181 WDPCPO95876 746 aa12.04□□□□□ -0.48
LSM6-204ENST00000504181 HPP00738 406 aa12.04□□□□□ -0.48
LSM6-204ENST00000504181 PPP1R2P41236 205 aa12.04□□□□□ -0.48
LSM6-204ENST00000504181 RPL7AP62424 266 aaKnown RBP12.04□□□□□ -0.48
LSM6-204ENST00000504181 TMEM115Q12893 351 aaPredicted RBP12.04□□□□□ -0.48
LSM6-204ENST00000504181 NKG7Q16617 165 aa12.04□□□□□ -0.48
LSM6-204ENST00000504181 PPP1R15BQ5SWA1 713 aa12.04□□□□□ -0.48
LSM6-204ENST00000504181 PDPK2PQ6A1A2 396 aa12.04□□□□□ -0.48
LSM6-204ENST00000504181 CEP128Q6ZU80 1094 aa12.04□□□□□ -0.48
LSM6-204ENST00000504181 KBTBD2Q8IY47 623 aa12.04□□□□□ -0.48
LSM6-204ENST00000504181 GDAP1Q8TB36 358 aa12.04□□□□□ -0.48
LSM6-204ENST00000504181 VPS50Q96JG6 964 aa12.04□□□□□ -0.48
LSM6-204ENST00000504181 NRTNQ99748 197 aa12.04□□□□□ -0.48
LSM6-204ENST00000504181 CNPY3Q9BT09 278 aa12.04□□□□□ -0.48
LSM6-204ENST00000504181 POLR1EQ9GZS1 481 aaKnown RBP12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms