RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, human

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF3B1-212	ENST00000496458	RAB41	Q5JT25	222 aa		5.1	□□□□□ -1.59
SF3B1-212	ENST00000496458	C4orf50	Q6ZRC1	276 aa		5.1	□□□□□ -1.59
SF3B1-212	ENST00000496458	ZNF383	Q8NA42	475 aa		5.1	□□□□□ -1.59
SF3B1-212	ENST00000496458	ZFAND2B	Q8WV99	257 aa		5.1	□□□□□ -1.59
SF3B1-212	ENST00000496458	RTP3	Q9BQQ7	232 aa		5.1	□□□□□ -1.59
SF3B1-212	ENST00000496458	PPIL3	Q9H2H8	161 aa	Known RBP	5.1	□□□□□ -1.59
SF3B1-212	ENST00000496458	SEC63	Q9UGP8	760 aa	Known RBP	5.1	□□□□□ -1.59
SF3B1-212	ENST00000496458	HACL1	Q9UJ83	578 aa		5.1	□□□□□ -1.59
SF3B1-212	ENST00000496458	FBXO2	Q9UK22	296 aa	Predicted RBP	5.1	□□□□□ -1.59
SF3B1-212	ENST00000496458	ZNF215	Q9UL58	517 aa	Predicted RBP	5.1	□□□□□ -1.59
SF3B1-212	ENST00000496458	PLAGL1	Q9UM63	463 aa		5.1	□□□□□ -1.59
SF3B1-212	ENST00000496458		A0A087X002	238 aa		5.09	□□□□□ -1.59
SF3B1-212	ENST00000496458		A0A1W2PRB8	838 aa		5.09	□□□□□ -1.59
SF3B1-212	ENST00000496458	ZNF197	O14709	1029 aa		5.09	□□□□□ -1.59
SF3B1-212	ENST00000496458	SSX4	O60224	188 aa		5.09	□□□□□ -1.59
SF3B1-212	ENST00000496458	ZNF821	O75541	412 aa	Predicted RBP	5.09	□□□□□ -1.59
SF3B1-212	ENST00000496458	TRMU	O75648	421 aa	Known RBP	5.09	□□□□□ -1.59
SF3B1-212	ENST00000496458	NADK	O95544	446 aa	Predicted RBP	5.09	□□□□□ -1.59
SF3B1-212	ENST00000496458	CXCL9	Q07325	125 aa		5.09	□□□□□ -1.59
SF3B1-212	ENST00000496458	PNRC1	Q12796	327 aa	Predicted RBP	5.09	□□□□□ -1.59
SF3B1-212	ENST00000496458	TMEM187	Q14656	261 aa		5.09	□□□□□ -1.59
SF3B1-212	ENST00000496458	HAUS6	Q7Z4H7	955 aa		5.09	□□□□□ -1.59
SF3B1-212	ENST00000496458	ZNF554	Q86TJ5	538 aa		5.09	□□□□□ -1.59
SF3B1-212	ENST00000496458	CPSF7	Q8N684	471 aa	Known RBP	5.09	□□□□□ -1.59
SF3B1-212	ENST00000496458	OR1J1	Q8NGS3	322 aa		5.09	□□□□□ -1.59
SF3B1-212	ENST00000496458	FAM120B	Q96EK7	910 aa	Known RBP	5.09	□□□□□ -1.59
SF3B1-212	ENST00000496458	NSL1	Q96IY1	281 aa		5.09	□□□□□ -1.59
SF3B1-212	ENST00000496458	C16orf70	Q9BSU1	422 aa		5.09	□□□□□ -1.59
SF3B1-212	ENST00000496458	FGF22	Q9HCT0	170 aa		5.09	□□□□□ -1.59
SF3B1-212	ENST00000496458	ACKR4	Q9NPB9	350 aa		5.09	□□□□□ -1.59
SF3B1-212	ENST00000496458	LARS	Q9P2J5	1176 aa	Known RBP	5.09	□□□□□ -1.59
SF3B1-212	ENST00000496458	SUCLA2	Q9P2R7	463 aa	Predicted RBP	5.09	□□□□□ -1.59
SF3B1-212	ENST00000496458	CACNG5	Q9UF02	275 aa		5.09	□□□□□ -1.59
SF3B1-212	ENST00000496458	UCHL5	Q9Y5K5	329 aa	Known RBP eCLIP	5.09	□□□□□ -1.59	2e-6	■□□□□ 8.8
SF3B1-212	ENST00000496458	ASTN2	O75129	1339 aa	Predicted RBP	5.08	□□□□□ -1.6
SF3B1-212	ENST00000496458	IGLV9-49	A0A0B4J1Y8	123 aa		5.08	□□□□□ -1.6
SF3B1-212	ENST00000496458	AGAP14	A8MT82	685 aa		5.08	□□□□□ -1.6
SF3B1-212	ENST00000496458	CTDSP2	O14595	271 aa		5.08	□□□□□ -1.6
SF3B1-212	ENST00000496458	PAPSS1	O43252	624 aa	Predicted RBP	5.08	□□□□□ -1.6
SF3B1-212	ENST00000496458	EML2	O95834	649 aa		5.08	□□□□□ -1.6
SF3B1-212	ENST00000496458	HMBS	P08397	361 aa		5.08	□□□□□ -1.6
SF3B1-212	ENST00000496458	FRMD6-AS1	P0C7T7	363 aa		5.08	□□□□□ -1.6
SF3B1-212	ENST00000496458	VDR	P11473	427 aa		5.08	□□□□□ -1.6
SF3B1-212	ENST00000496458	WNT5A	P41221	380 aa		5.08	□□□□□ -1.6
SF3B1-212	ENST00000496458	LGALS3BP	Q08380	585 aa		5.08	□□□□□ -1.6
SF3B1-212	ENST00000496458	DUSP28	Q4G0W2	176 aa		5.08	□□□□□ -1.6
SF3B1-212	ENST00000496458	DCAF10	Q5QP82	559 aa		5.08	□□□□□ -1.6
SF3B1-212	ENST00000496458	GRTP1	Q5TC63	336 aa		5.08	□□□□□ -1.6
SF3B1-212	ENST00000496458	TMCO3	Q6UWJ1	677 aa		5.08	□□□□□ -1.6
SF3B1-212	ENST00000496458	SZRD1	Q7Z422	152 aa		5.08	□□□□□ -1.6
SF3B1-212	ENST00000496458	FAM114A1	Q8IWE2	563 aa		5.08	□□□□□ -1.6
SF3B1-212	ENST00000496458	ERP27	Q96DN0	273 aa		5.08	□□□□□ -1.6
SF3B1-212	ENST00000496458	SGK494	Q96LW2	274 aa		5.08	□□□□□ -1.6
SF3B1-212	ENST00000496458	OR6C1	Q96RD1	312 aa		5.08	□□□□□ -1.6
SF3B1-212	ENST00000496458	RSPH9	Q9H1X1	276 aa	Predicted RBP	5.08	□□□□□ -1.6
SF3B1-212	ENST00000496458	WDR13	Q9H1Z4	485 aa		5.08	□□□□□ -1.6
SF3B1-212	ENST00000496458	ZNF71	Q9NQZ8	489 aa	Predicted RBP	5.08	□□□□□ -1.6
SF3B1-212	ENST00000496458	ARHGEF38	Q9NXL2	777 aa		5.08	□□□□□ -1.6
SF3B1-212	ENST00000496458	CLIC5	Q9NZA1	410 aa		5.08	□□□□□ -1.6
SF3B1-212	ENST00000496458	PYGO1	Q9Y3Y4	419 aa		5.08	□□□□□ -1.6
SF3B1-212	ENST00000496458	DISP3	Q9P2K9	1392 aa		5.07	□□□□□ -1.6
SF3B1-212	ENST00000496458	GIMAP1-GIMAP5	A0A087WTJ2	511 aa		5.07	□□□□□ -1.6
SF3B1-212	ENST00000496458		A0A1W2PQ09	198 aa		5.07	□□□□□ -1.6
SF3B1-212	ENST00000496458	FSD2	A1L4K1	749 aa		5.07	□□□□□ -1.6
SF3B1-212	ENST00000496458		A6NCN8	305 aa		5.07	□□□□□ -1.6
SF3B1-212	ENST00000496458		E9PI62	339 aa		5.07	□□□□□ -1.6
SF3B1-212	ENST00000496458	CREG1	O75629	220 aa		5.07	□□□□□ -1.6
SF3B1-212	ENST00000496458	ZWINT	O95229	277 aa		5.07	□□□□□ -1.6
SF3B1-212	ENST00000496458	VPREB1	P12018	145 aa		5.07	□□□□□ -1.6
SF3B1-212	ENST00000496458	CREB5	Q02930	508 aa		5.07	□□□□□ -1.6
SF3B1-212	ENST00000496458	CCDC184	Q52MB2	194 aa		5.07	□□□□□ -1.6
SF3B1-212	ENST00000496458	ZNF772	Q68DY9	489 aa	Predicted RBP	5.07	□□□□□ -1.6
SF3B1-212	ENST00000496458	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	5.07	□□□□□ -1.6
SF3B1-212	ENST00000496458	SLC16A9	Q7RTY1	509 aa		5.07	□□□□□ -1.6
SF3B1-212	ENST00000496458	LDB1	Q86U70	411 aa	Predicted RBP	5.07	□□□□□ -1.6
SF3B1-212	ENST00000496458	C17orf53	Q8N3J3	647 aa	Predicted RBP	5.07	□□□□□ -1.6
SF3B1-212	ENST00000496458	OLIG1	Q8TAK6	271 aa		5.07	□□□□□ -1.6
SF3B1-212	ENST00000496458	HSD17B8	Q92506	261 aa		5.07	□□□□□ -1.6
SF3B1-212	ENST00000496458	GIMAP5	Q96F15	307 aa		5.07	□□□□□ -1.6
SF3B1-212	ENST00000496458	PAFAH2	Q99487	392 aa		5.07	□□□□□ -1.6
SF3B1-212	ENST00000496458	BARD1	Q99728	777 aa	Known RBP	5.07	□□□□□ -1.6
SF3B1-212	ENST00000496458	KCNK15	Q9H427	330 aa		5.07	□□□□□ -1.6
SF3B1-212	ENST00000496458	BLOC1S4	Q9NUP1	217 aa		5.07	□□□□□ -1.6
SF3B1-212	ENST00000496458	HAUS2	Q9NVX0	235 aa		5.07	□□□□□ -1.6
SF3B1-212	ENST00000496458	OSER1	Q9NX31	292 aa		5.07	□□□□□ -1.6
SF3B1-212	ENST00000496458	ZNF148	Q9UQR1	794 aa		5.07	□□□□□ -1.6
SF3B1-212	ENST00000496458	SOS1	Q07889	1333 aa	Predicted RBP	5.06	□□□□□ -1.6
SF3B1-212	ENST00000496458	IGHV4-61	A0A0C4DH41	118 aa		5.06	□□□□□ -1.6
SF3B1-212	ENST00000496458	IGHV4-59	P01825	116 aa		5.06	□□□□□ -1.6
SF3B1-212	ENST00000496458	GCH1	P30793	250 aa		5.06	□□□□□ -1.6
SF3B1-212	ENST00000496458	ARSE	P51690	589 aa		5.06	□□□□□ -1.6
SF3B1-212	ENST00000496458	PNLIPRP2	P54317	469 aa		5.06	□□□□□ -1.6
SF3B1-212	ENST00000496458	EIF5	P55010	431 aa	Known RBP	5.06	□□□□□ -1.6
SF3B1-212	ENST00000496458	IRX1	P78414	480 aa	Predicted RBP	5.06	□□□□□ -1.6
SF3B1-212	ENST00000496458	GPR17	Q13304	367 aa		5.06	□□□□□ -1.6
SF3B1-212	ENST00000496458	TUBB2A	Q13885	445 aa		5.06	□□□□□ -1.6
SF3B1-212	ENST00000496458	RRS1	Q15050	365 aa	Known RBP	5.06	□□□□□ -1.6
SF3B1-212	ENST00000496458	P2RY6	Q15077	328 aa		5.06	□□□□□ -1.6
SF3B1-212	ENST00000496458	PLEKHS1	Q5SXH7	462 aa		5.06	□□□□□ -1.6
SF3B1-212	ENST00000496458	KRT77	Q7Z794	578 aa		5.06	□□□□□ -1.6

Retrieved 100 of 20,778 RNA–protein pairs in 26 ms