RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 DCTN4Q9UJW0 460 aa21.18■□□□□ 0.98
SMC4-221ENST00000489573 PTBP2Q9UKA9 531 aaKnown RBP21.18■□□□□ 0.98
SMC4-221ENST00000489573 EPB41L3Q9Y2J2 1087 aaPredicted RBP21.18■□□□□ 0.98
SMC4-221ENST00000489573 TNPO3Q9Y5L0 923 aaKnown RBP21.18■□□□□ 0.98
SMC4-221ENST00000489573 TOR1BO14657 336 aa21.17■□□□□ 0.98
SMC4-221ENST00000489573 PSIP1O75475 530 aaKnown RBP21.17■□□□□ 0.98
SMC4-221ENST00000489573 ANXA5P08758 320 aa21.17■□□□□ 0.98
SMC4-221ENST00000489573 HIST1H2AGP0C0S8 130 aaPredicted RBP21.17■□□□□ 0.98
SMC4-221ENST00000489573 HIST1H2ADP20671 130 aa21.17■□□□□ 0.98
SMC4-221ENST00000489573 PCBP2Q15366 365 aaKnown RBP eCLIP21.17■□□□□ 0.98
SMC4-221ENST00000489573 FBXO48Q5FWF7 155 aa21.17■□□□□ 0.98
SMC4-221ENST00000489573 CWF19L1Q69YN2 538 aaKnown RBP21.17■□□□□ 0.98
SMC4-221ENST00000489573 GALNT13Q8IUC8 556 aa21.17■□□□□ 0.98
SMC4-221ENST00000489573 MCOLN3Q8TDD5 553 aa21.17■□□□□ 0.98
SMC4-221ENST00000489573 SCARF2Q96GP6 870 aaPredicted RBP21.17■□□□□ 0.98
SMC4-221ENST00000489573 HIST1H2AHQ96KK5 128 aa21.17■□□□□ 0.98
SMC4-221ENST00000489573 NECAB3Q96P71 396 aaPredicted RBP21.17■□□□□ 0.98
SMC4-221ENST00000489573 HIST1H2AJQ99878 128 aa21.17■□□□□ 0.98
SMC4-221ENST00000489573 SIKE1Q9BRV8 207 aa21.17■□□□□ 0.98
SMC4-221ENST00000489573 TIMM29Q9BSF4 260 aa21.17■□□□□ 0.98
SMC4-221ENST00000489573 H2AFJQ9BTM1 129 aa21.17■□□□□ 0.98
SMC4-221ENST00000489573 TM7SF3Q9NS93 570 aa21.17■□□□□ 0.98
SMC4-221ENST00000489573 ARL15Q9NXU5 204 aa21.17■□□□□ 0.98
SMC4-221ENST00000489573 WWOXQ9NZC7 414 aa21.17■□□□□ 0.98
SMC4-221ENST00000489573 MOSPD1Q9UJG1 213 aa21.17■□□□□ 0.98
SMC4-221ENST00000489573 ZBTB32Q9Y2Y4 487 aaPredicted RBP21.17■□□□□ 0.98
SMC4-221ENST00000489573 A0A0G2JND7 137 aa21.16■□□□□ 0.98
SMC4-221ENST00000489573 NDUFS2O75306 463 aa21.16■□□□□ 0.98
SMC4-221ENST00000489573 CATP04040 527 aaKnown RBP21.16■□□□□ 0.98
SMC4-221ENST00000489573 FUCA1P04066 466 aa21.16■□□□□ 0.98
SMC4-221ENST00000489573 HTR1BP28222 390 aa21.16■□□□□ 0.98
SMC4-221ENST00000489573 AP1S2P56377 157 aa21.16■□□□□ 0.98
SMC4-221ENST00000489573 YPEL5P62699 121 aa21.16■□□□□ 0.98
SMC4-221ENST00000489573 PYCR3Q53H96 274 aa21.16■□□□□ 0.98
SMC4-221ENST00000489573 OR56A4Q8NGH8 313 aa21.16■□□□□ 0.98
SMC4-221ENST00000489573 CFAP61Q8NHU2 1237 aa21.16■□□□□ 0.98
SMC4-221ENST00000489573 ZNF483Q8TF39 744 aaPredicted RBP21.16■□□□□ 0.98
SMC4-221ENST00000489573 UBTD2Q8WUN7 234 aa21.16■□□□□ 0.98
SMC4-221ENST00000489573 RHBDF1Q96CC6 855 aa21.16■□□□□ 0.98
SMC4-221ENST00000489573 WDR92Q96MX6 357 aa21.16■□□□□ 0.98
SMC4-221ENST00000489573 SHCBP1LQ9BZQ2 653 aa21.16■□□□□ 0.98
SMC4-221ENST00000489573 PCED1AQ9H1Q7 454 aa21.16■□□□□ 0.98
SMC4-221ENST00000489573 FGF22Q9HCT0 170 aa21.16■□□□□ 0.98
SMC4-221ENST00000489573 EIF2B4Q9UI10 523 aaKnown RBP21.16■□□□□ 0.98
SMC4-221ENST00000489573 PCTPQ9UKL6 214 aa21.16■□□□□ 0.98
SMC4-221ENST00000489573 SUFUQ9UMX1 484 aa21.16■□□□□ 0.98
SMC4-221ENST00000489573 PRSS38A1L453 326 aa21.15■□□□□ 0.98
SMC4-221ENST00000489573 K7ESF4 209 aa21.15■□□□□ 0.98
SMC4-221ENST00000489573 ACP5P13686 325 aa21.15■□□□□ 0.98
SMC4-221ENST00000489573 MAP4P27816 1152 aaKnown RBP21.15■□□□□ 0.98
SMC4-221ENST00000489573 RPL14P50914 215 aaKnown RBP21.15■□□□□ 0.98
SMC4-221ENST00000489573 HK2P52789 917 aa21.15■□□□□ 0.98
SMC4-221ENST00000489573 CDH13P55290 713 aa21.15■□□□□ 0.98
SMC4-221ENST00000489573 DMPKQ09013 629 aa21.15■□□□□ 0.98
SMC4-221ENST00000489573 MBOAT1Q6ZNC8 495 aa21.15■□□□□ 0.98
SMC4-221ENST00000489573 ABI3BPQ7Z7G0 1075 aa21.15■□□□□ 0.98
SMC4-221ENST00000489573 CUZD1Q86UP6 607 aa21.15■□□□□ 0.98
SMC4-221ENST00000489573 TCAIMQ8N3R3 496 aa21.15■□□□□ 0.98
SMC4-221ENST00000489573 AGR3Q8TD06 166 aa21.15■□□□□ 0.98
SMC4-221ENST00000489573 SNX19Q92543 992 aa21.15■□□□□ 0.98
SMC4-221ENST00000489573 NSUN5Q96P11 429 aaKnown RBP21.15■□□□□ 0.98
SMC4-221ENST00000489573 PLCD4Q9BRC7 762 aa21.15■□□□□ 0.98
SMC4-221ENST00000489573 TMEM120AQ9BXJ8 343 aa21.15■□□□□ 0.98
SMC4-221ENST00000489573 OR52A5Q9H2C5 316 aa21.15■□□□□ 0.98
SMC4-221ENST00000489573 KCNK13Q9HB14 408 aa21.15■□□□□ 0.98
SMC4-221ENST00000489573 MRPL40Q9NQ50 206 aaKnown RBP21.15■□□□□ 0.98
SMC4-221ENST00000489573 KCNK4Q9NYG8 393 aa21.15■□□□□ 0.98
SMC4-221ENST00000489573 USH1CQ9Y6N9 552 aa21.15■□□□□ 0.98
SMC4-221ENST00000489573 A0A1W2PPC4 97 aa21.14■□□□□ 0.98
SMC4-221ENST00000489573 ARHGEF33A8MVX0 844 aa21.14■□□□□ 0.98
SMC4-221ENST00000489573 AXIN1O15169 862 aa21.14■□□□□ 0.98
SMC4-221ENST00000489573 TAPBPO15533 448 aa21.14■□□□□ 0.98
SMC4-221ENST00000489573 KCNJ13O60928 360 aa21.14■□□□□ 0.98
SMC4-221ENST00000489573 RABIFP47224 123 aa21.14■□□□□ 0.98
SMC4-221ENST00000489573 THOP1P52888 689 aa21.14■□□□□ 0.98
SMC4-221ENST00000489573 ARFIP2P53365 341 aa21.14■□□□□ 0.98
SMC4-221ENST00000489573 CLCQ05315 142 aa21.14■□□□□ 0.98
SMC4-221ENST00000489573 ZSCAN26Q16670 478 aa21.14■□□□□ 0.98
SMC4-221ENST00000489573 C18orf21Q32NC0 220 aaPredicted RBP21.14■□□□□ 0.98
SMC4-221ENST00000489573 ENPP7Q6UWV6 458 aa21.14■□□□□ 0.98
SMC4-221ENST00000489573 MAMSTRQ6ZN01 415 aa21.14■□□□□ 0.98
SMC4-221ENST00000489573 CHST15Q7LFX5 561 aaPredicted RBP21.14■□□□□ 0.98
SMC4-221ENST00000489573 KIRREL3Q8IZU9 778 aa21.14■□□□□ 0.98
SMC4-221ENST00000489573 ESAMQ96AP7 390 aa21.14■□□□□ 0.98
SMC4-221ENST00000489573 SPACA7Q96KW9 195 aa21.14■□□□□ 0.98
SMC4-221ENST00000489573 TMEM79Q9BSE2 394 aa21.14■□□□□ 0.98
SMC4-221ENST00000489573 DLGAP2Q9P1A6 1054 aa21.14■□□□□ 0.98
SMC4-221ENST00000489573 ZDHHC2Q9UIJ5 367 aa21.14■□□□□ 0.98
SMC4-221ENST00000489573 ASB1Q9Y576 335 aa21.14■□□□□ 0.98
SMC4-221ENST00000489573 E2F3O00716 465 aa21.14■□□□□ 0.97
SMC4-221ENST00000489573 PDGFBP01127 241 aaPredicted RBP21.14■□□□□ 0.97
SMC4-221ENST00000489573 ALOX15P16050 662 aaPredicted RBP21.14■□□□□ 0.97
SMC4-221ENST00000489573 TSPAN8P19075 237 aa21.14■□□□□ 0.97
SMC4-221ENST00000489573 BDKRB1P46663 353 aa21.14■□□□□ 0.97
SMC4-221ENST00000489573 GNPDA1P46926 289 aa21.14■□□□□ 0.97
SMC4-221ENST00000489573 HSPA7P48741 367 aa21.14■□□□□ 0.97
SMC4-221ENST00000489573 AQP5P55064 265 aa21.14■□□□□ 0.97
SMC4-221ENST00000489573 LCP2Q13094 533 aa21.14■□□□□ 0.97
SMC4-221ENST00000489573 EEF1AKMT2Q5JPI9 291 aaKnown RBP21.14■□□□□ 0.97
SMC4-221ENST00000489573 SH2D4BQ5SQS7 431 aa21.14■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 82.3 ms