RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 TWSG1Q9GZX9 223 aa15.49■□□□□ 0.07
UPF3A-208ENST00000484246 SEMA5BQ9P283 1151 aa15.49■□□□□ 0.07
UPF3A-208ENST00000484246 RALYQ9UKM9 306 aaKnown RBP15.49■□□□□ 0.07
UPF3A-208ENST00000484246 CFAP20Q9Y6A4 193 aaKnown RBP15.49■□□□□ 0.07
UPF3A-208ENST00000484246 RP1P56715 2156 aa15.49■□□□□ 0.07
UPF3A-208ENST00000484246 ZFC3H1O60293 1989 aaKnown RBP15.49■□□□□ 0.07
UPF3A-208ENST00000484246 CTAGE15A4D2H0 777 aa15.48■□□□□ 0.07
UPF3A-208ENST00000484246 CTAGE8P0CG41 777 aa15.48■□□□□ 0.07
UPF3A-208ENST00000484246 LEPRP48357 1165 aaKnown RBP15.48■□□□□ 0.07
UPF3A-208ENST00000484246 ERVPABLB-1P60509 514 aa15.48■□□□□ 0.07
UPF3A-208ENST00000484246 PDIA2Q13087 525 aaKnown RBP15.48■□□□□ 0.07
UPF3A-208ENST00000484246 C16orf72Q14CZ0 275 aa15.48■□□□□ 0.07
UPF3A-208ENST00000484246 FASTKD3Q14CZ7 662 aaKnown RBP15.48■□□□□ 0.07
UPF3A-208ENST00000484246 ZNF789Q5FWF6 425 aa15.48■□□□□ 0.07
UPF3A-208ENST00000484246 PLEKHS1Q5SXH7 462 aa15.48■□□□□ 0.07
UPF3A-208ENST00000484246 UNC5DQ6UXZ4 953 aa15.48■□□□□ 0.07
UPF3A-208ENST00000484246 RAB11FIP2Q7L804 512 aa15.48■□□□□ 0.07
UPF3A-208ENST00000484246 PRSS42Q7Z5A4 293 aa15.48■□□□□ 0.07
UPF3A-208ENST00000484246 ARHGAP22Q7Z5H3 698 aa15.48■□□□□ 0.07
UPF3A-208ENST00000484246 CLEC14AQ86T13 490 aa15.48■□□□□ 0.07
UPF3A-208ENST00000484246 CTAGE6Q86UF2 777 aa15.48■□□□□ 0.07
UPF3A-208ENST00000484246 CTAGE4Q8IX94 777 aa15.48■□□□□ 0.07
UPF3A-208ENST00000484246 TBC1D21Q8IYX1 336 aa15.48■□□□□ 0.07
UPF3A-208ENST00000484246 UNC5BQ8IZJ1 945 aa15.48■□□□□ 0.07
UPF3A-208ENST00000484246 KRT222Q8N1A0 295 aa15.48■□□□□ 0.07
UPF3A-208ENST00000484246 ZCCHC14Q8WYQ9 949 aaKnown RBP15.48■□□□□ 0.07
UPF3A-208ENST00000484246 RSC1A1Q92681 617 aa15.48■□□□□ 0.07
UPF3A-208ENST00000484246 CD180Q99467 661 aa15.48■□□□□ 0.07
UPF3A-208ENST00000484246 TFB2MQ9H5Q4 396 aaKnown RBP15.48■□□□□ 0.07
UPF3A-208ENST00000484246 ASCL3Q9NQ33 180 aa15.48■□□□□ 0.07
UPF3A-208ENST00000484246 TMEM9Q9P0T7 183 aa15.48■□□□□ 0.07
UPF3A-208ENST00000484246 SATB2Q9UPW6 733 aa15.48■□□□□ 0.07
UPF3A-208ENST00000484246 MED16Q9Y2X0 877 aa15.48■□□□□ 0.07
UPF3A-208ENST00000484246 CFAP47Q6ZTR5 3102 aa15.48■□□□□ 0.07
UPF3A-208ENST00000484246 OR5K3A6NET4 321 aa15.47■□□□□ 0.07
UPF3A-208ENST00000484246 CDRT15L2A8MXV6 281 aa15.47■□□□□ 0.07
UPF3A-208ENST00000484246 BRINP1O60477 761 aa15.47■□□□□ 0.07
UPF3A-208ENST00000484246 NIPSNAP2O75323 286 aa15.47■□□□□ 0.07
UPF3A-208ENST00000484246 MPOP05164 745 aa15.47■□□□□ 0.07
UPF3A-208ENST00000484246 ITGA2BP08514 1039 aa15.47■□□□□ 0.07
UPF3A-208ENST00000484246 AMD1P17707 334 aa15.47■□□□□ 0.07
UPF3A-208ENST00000484246 HSPA14Q0VDF9 509 aa15.47■□□□□ 0.07
UPF3A-208ENST00000484246 CTBP1Q13363 440 aa15.47■□□□□ 0.07
UPF3A-208ENST00000484246 TBC1D25Q3MII6 688 aa15.47■□□□□ 0.07
UPF3A-208ENST00000484246 GLE1Q53GS7 698 aaKnown RBP15.47■□□□□ 0.07
UPF3A-208ENST00000484246 C3orf38Q5JPI3 329 aa15.47■□□□□ 0.07
UPF3A-208ENST00000484246 PHF19Q5T6S3 580 aa15.47■□□□□ 0.07
UPF3A-208ENST00000484246 ZNF549Q6P9A3 640 aa15.47■□□□□ 0.07
UPF3A-208ENST00000484246 OTOAQ7RTW8 1153 aa15.47■□□□□ 0.07
UPF3A-208ENST00000484246 PROSER1Q86XN7 944 aa15.47■□□□□ 0.07
UPF3A-208ENST00000484246 VRK3Q8IV63 474 aa15.47■□□□□ 0.07
UPF3A-208ENST00000484246 CARFQ8N187 725 aa15.47■□□□□ 0.07
UPF3A-208ENST00000484246 NOA1Q8NC60 698 aaKnown RBP15.47■□□□□ 0.07
UPF3A-208ENST00000484246 AGBL5Q8NDL9 886 aa15.47■□□□□ 0.07
UPF3A-208ENST00000484246 FBXO36Q8NEA4 188 aa15.47■□□□□ 0.07
UPF3A-208ENST00000484246 OR5K2Q8NHB8 316 aa15.47■□□□□ 0.07
UPF3A-208ENST00000484246 SNIP1Q8TAD8 396 aaKnown RBP15.47■□□□□ 0.07
UPF3A-208ENST00000484246 GSDMBQ8TAX9 411 aa15.47■□□□□ 0.07
UPF3A-208ENST00000484246 FBXO25Q8TCJ0 367 aa15.47■□□□□ 0.07
UPF3A-208ENST00000484246 NCSTNQ92542 709 aa15.47■□□□□ 0.07
UPF3A-208ENST00000484246 C9orf72Q96LT7 481 aa15.47■□□□□ 0.07
UPF3A-208ENST00000484246 ZNF578Q96N58 590 aaPredicted RBP15.47■□□□□ 0.07
UPF3A-208ENST00000484246 SLC46A1Q96NT5 459 aa15.47■□□□□ 0.07
UPF3A-208ENST00000484246 LRRC1Q9BTT6 524 aa15.47■□□□□ 0.07
UPF3A-208ENST00000484246 FBXO6Q9NRD1 293 aaPredicted RBP15.47■□□□□ 0.07
UPF3A-208ENST00000484246 IARS2Q9NSE4 1012 aaKnown RBP15.47■□□□□ 0.07
UPF3A-208ENST00000484246 MOCS1Q9NZB8 636 aa15.47■□□□□ 0.07
UPF3A-208ENST00000484246 AKAP7Q9P0M2 348 aaPredicted RBP15.47■□□□□ 0.07
UPF3A-208ENST00000484246 POLG2Q9UHN1 485 aa15.47■□□□□ 0.07
UPF3A-208ENST00000484246 ACSL6Q9UKU0 697 aa15.47■□□□□ 0.07
UPF3A-208ENST00000484246 CORO1CQ9ULV4 474 aaPredicted RBP15.47■□□□□ 0.07
UPF3A-208ENST00000484246 CRYL1Q9Y2S2 319 aa15.47■□□□□ 0.07
UPF3A-208ENST00000484246 LOXL2Q9Y4K0 774 aa15.47■□□□□ 0.07
UPF3A-208ENST00000484246 PCDHGA7Q9Y5G6 932 aa15.47■□□□□ 0.07
UPF3A-208ENST00000484246 B4E171 279 aa15.46■□□□□ 0.07
UPF3A-208ENST00000484246 MATN2O00339 956 aa15.46■□□□□ 0.07
UPF3A-208ENST00000484246 RPN2P04844 631 aa15.46■□□□□ 0.07
UPF3A-208ENST00000484246 ERVK-10P10266 1014 aa15.46■□□□□ 0.07
UPF3A-208ENST00000484246 TYRP1P17643 537 aa15.46■□□□□ 0.07
UPF3A-208ENST00000484246 ITGB6P18564 788 aa15.46■□□□□ 0.07
UPF3A-208ENST00000484246 CD9P21926 228 aa15.46■□□□□ 0.07
UPF3A-208ENST00000484246 FMO4P31512 558 aa15.46■□□□□ 0.07
UPF3A-208ENST00000484246 TSPAN7P41732 249 aa15.46■□□□□ 0.07
UPF3A-208ENST00000484246 MAPK9P45984 424 aa15.46■□□□□ 0.07
UPF3A-208ENST00000484246 MPP1Q00013 466 aa15.46■□□□□ 0.07
UPF3A-208ENST00000484246 CYP4F3Q08477 520 aa15.46■□□□□ 0.07
UPF3A-208ENST00000484246 PLCL1Q15111 1095 aa15.46■□□□□ 0.07
UPF3A-208ENST00000484246 TEDDM1Q5T9Z0 273 aa15.46■□□□□ 0.07
UPF3A-208ENST00000484246 TRMT10BQ6PF06 316 aaKnown RBP15.46■□□□□ 0.07
UPF3A-208ENST00000484246 CYS1Q717R9 158 aa15.46■□□□□ 0.07
UPF3A-208ENST00000484246 OOSP2Q86WS3 158 aa15.46■□□□□ 0.07
UPF3A-208ENST00000484246 FBXO39Q8N4B4 442 aa15.46■□□□□ 0.07
UPF3A-208ENST00000484246 CEP112Q8N8E3 955 aa15.46■□□□□ 0.07
UPF3A-208ENST00000484246 MDM1Q8TC05 714 aa15.46■□□□□ 0.07
UPF3A-208ENST00000484246 CFAP36Q96G28 342 aa15.46■□□□□ 0.07
UPF3A-208ENST00000484246 ZDHHC12Q96GR4 267 aa15.46■□□□□ 0.07
UPF3A-208ENST00000484246 AARSD1Q9BTE6 412 aaKnown RBP15.46■□□□□ 0.07
UPF3A-208ENST00000484246 TRIT1Q9H3H1 467 aaKnown RBP15.46■□□□□ 0.07
UPF3A-208ENST00000484246 THSD1Q9NS62 852 aa15.46■□□□□ 0.07
UPF3A-208ENST00000484246 ZDHHC18Q9NUE0 388 aa15.46■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms