RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 B3GNT6Q6ZMB0 384 aa8.77□□□□□ -1.01
SYNE1-217ENST00000466159 HTR3DQ70Z44 454 aa8.77□□□□□ -1.01
SYNE1-217ENST00000466159 DDX53Q86TM3 631 aaKnown RBP8.77□□□□□ -1.01
SYNE1-217ENST00000466159 ITIH5Q86UX2 942 aa8.77□□□□□ -1.01
SYNE1-217ENST00000466159 PROSER1Q86XN7 944 aa8.77□□□□□ -1.01
SYNE1-217ENST00000466159 TBC1D21Q8IYX1 336 aa8.77□□□□□ -1.01
SYNE1-217ENST00000466159 FIBINQ8TAL6 211 aa8.77□□□□□ -1.01
SYNE1-217ENST00000466159 MAGEE2Q8TD90 523 aaPredicted RBP8.77□□□□□ -1.01
SYNE1-217ENST00000466159 CYGBQ8WWM9 190 aa8.77□□□□□ -1.01
SYNE1-217ENST00000466159 MRPS31Q92665 395 aaKnown RBP8.77□□□□□ -1.01
SYNE1-217ENST00000466159 FBXL20Q96IG2 436 aa8.77□□□□□ -1.01
SYNE1-217ENST00000466159 PPP3R2Q96LZ3 170 aa8.77□□□□□ -1.01
SYNE1-217ENST00000466159 HAUS8Q9BT25 410 aa8.77□□□□□ -1.01
SYNE1-217ENST00000466159 CHID1Q9BWS9 393 aa8.77□□□□□ -1.01
SYNE1-217ENST00000466159 SOX17Q9H6I2 414 aaPredicted RBP8.77□□□□□ -1.01
SYNE1-217ENST00000466159 CLK4Q9HAZ1 481 aaKnown RBP8.77□□□□□ -1.01
SYNE1-217ENST00000466159 TMEM45AQ9NWC5 275 aa8.77□□□□□ -1.01
SYNE1-217ENST00000466159 SPG21Q9NZD8 308 aa8.77□□□□□ -1.01
SYNE1-217ENST00000466159 PTTG2Q9NZH5 202 aa8.77□□□□□ -1.01
SYNE1-217ENST00000466159 MBD1Q9UIS9 605 aaPredicted RBP8.77□□□□□ -1.01
SYNE1-217ENST00000466159 ZNF490Q9ULM2 529 aaPredicted RBP8.77□□□□□ -1.01
SYNE1-217ENST00000466159 A0A1W2PRU2 124 aa8.77□□□□□ -1.01
SYNE1-217ENST00000466159 DYTNA2CJ06 578 aa8.77□□□□□ -1.01
SYNE1-217ENST00000466159 K7EPI3 171 aa8.77□□□□□ -1.01
SYNE1-217ENST00000466159 RGS14O43566 566 aa8.77□□□□□ -1.01
SYNE1-217ENST00000466159 ULK1O75385 1050 aa8.77□□□□□ -1.01
SYNE1-217ENST00000466159 LDLRP01130 860 aa8.77□□□□□ -1.01
SYNE1-217ENST00000466159 SRCP12931 536 aa8.77□□□□□ -1.01
SYNE1-217ENST00000466159 CDH2P19022 906 aaPredicted RBP8.77□□□□□ -1.01
SYNE1-217ENST00000466159 PCSK6P29122 969 aa8.77□□□□□ -1.01
SYNE1-217ENST00000466159 MAPK8P45983 427 aa8.77□□□□□ -1.01
SYNE1-217ENST00000466159 B4GALNT1Q00973 533 aa8.77□□□□□ -1.01
SYNE1-217ENST00000466159 PTSQ03393 145 aa8.77□□□□□ -1.01
SYNE1-217ENST00000466159 PWP1Q13610 501 aa8.77□□□□□ -1.01
SYNE1-217ENST00000466159 ADRM1Q16186 407 aa8.77□□□□□ -1.01
SYNE1-217ENST00000466159 FAM174BQ3ZCQ3 159 aa8.77□□□□□ -1.01
SYNE1-217ENST00000466159 SLC36A3Q495N2 470 aa8.77□□□□□ -1.01
SYNE1-217ENST00000466159 GPR33Q49SQ1 333 aa8.77□□□□□ -1.01
SYNE1-217ENST00000466159 ATP13A5Q4VNC0 1218 aa8.77□□□□□ -1.01
SYNE1-217ENST00000466159 LYPLAL1Q5VWZ2 237 aa8.77□□□□□ -1.01
SYNE1-217ENST00000466159 TBPL2Q6SJ96 375 aa8.77□□□□□ -1.01
SYNE1-217ENST00000466159 FAM43BQ6ZT52 329 aaPredicted RBP8.77□□□□□ -1.01
SYNE1-217ENST00000466159 RGL4Q8IZJ4 473 aa8.77□□□□□ -1.01
SYNE1-217ENST00000466159 ZNF786Q8N393 782 aa8.77□□□□□ -1.01
SYNE1-217ENST00000466159 KRTCAP2Q8N6L1 136 aa8.77□□□□□ -1.01
SYNE1-217ENST00000466159 ASIC4Q96FT7 647 aa8.77□□□□□ -1.01
SYNE1-217ENST00000466159 VPS50Q96JG6 964 aa8.77□□□□□ -1.01
SYNE1-217ENST00000466159 NSMCE2Q96MF7 247 aa8.77□□□□□ -1.01
SYNE1-217ENST00000466159 PAK6Q9NQU5 681 aaPredicted RBP8.77□□□□□ -1.01
SYNE1-217ENST00000466159 DDX18Q9NVP1 670 aaKnown RBP8.77□□□□□ -1.01
SYNE1-217ENST00000466159 SLC8A2Q9UPR5 921 aa8.77□□□□□ -1.01
SYNE1-217ENST00000466159 PCDHB3Q9Y5E6 796 aa8.77□□□□□ -1.01
SYNE1-217ENST00000466159 PLXNB3Q9ULL4 1909 aa8.77□□□□□ -1.01
SYNE1-217ENST00000466159 KANSL1LA0AUZ9 987 aa8.76□□□□□ -1.01
SYNE1-217ENST00000466159 GRXCR2A6NFK2 248 aa8.76□□□□□ -1.01
SYNE1-217ENST00000466159 AGAP14A8MT82 685 aa8.76□□□□□ -1.01
SYNE1-217ENST00000466159 TGM5O43548 720 aa8.76□□□□□ -1.01
SYNE1-217ENST00000466159 SEC22BO75396 215 aa8.76□□□□□ -1.01
SYNE1-217ENST00000466159 PARNO95453 639 aaKnown RBP8.76□□□□□ -1.01
SYNE1-217ENST00000466159 PCNAP12004 261 aa8.76□□□□□ -1.01
SYNE1-217ENST00000466159 EPB42P16452 691 aa8.76□□□□□ -1.01
SYNE1-217ENST00000466159 MSH3P20585 1137 aa8.76□□□□□ -1.01
SYNE1-217ENST00000466159 LHCGRP22888 699 aa8.76□□□□□ -1.01
SYNE1-217ENST00000466159 MYF6P23409 242 aa8.76□□□□□ -1.01
SYNE1-217ENST00000466159 HLA-FP30511 346 aa8.76□□□□□ -1.01
SYNE1-217ENST00000466159 SLC5A2P31639 672 aa8.76□□□□□ -1.01
SYNE1-217ENST00000466159 CCR7P32248 378 aa8.76□□□□□ -1.01
SYNE1-217ENST00000466159 ALDH3B2P48448 385 aa8.76□□□□□ -1.01
SYNE1-217ENST00000466159 DYNC1I2Q13409 638 aaKnown RBP8.76□□□□□ -1.01
SYNE1-217ENST00000466159 ZXDCQ2QGD7 858 aaPredicted RBP8.76□□□□□ -1.01
SYNE1-217ENST00000466159 SLC44A4Q53GD3 710 aa8.76□□□□□ -1.01
SYNE1-217ENST00000466159 SPANXN4Q5MJ08 99 aa8.76□□□□□ -1.01
SYNE1-217ENST00000466159 BORAQ6PGQ7 559 aa8.76□□□□□ -1.01
SYNE1-217ENST00000466159 TTC33Q6PID6 262 aaPredicted RBP8.76□□□□□ -1.01
SYNE1-217ENST00000466159 OFCC1Q8IZS5 231 aa8.76□□□□□ -1.01
SYNE1-217ENST00000466159 CBARPQ8N350 705 aaPredicted RBP8.76□□□□□ -1.01
SYNE1-217ENST00000466159 CPXM2Q8N436 756 aa8.76□□□□□ -1.01
SYNE1-217ENST00000466159 LIX1Q8N485 282 aa8.76□□□□□ -1.01
SYNE1-217ENST00000466159 CLHC1Q8NHS4 586 aa8.76□□□□□ -1.01
SYNE1-217ENST00000466159 SLC13A3Q8WWT9 602 aa8.76□□□□□ -1.01
SYNE1-217ENST00000466159 SCRN2Q96FV2 425 aa8.76□□□□□ -1.01
SYNE1-217ENST00000466159 ZNF583Q96ND8 569 aa8.76□□□□□ -1.01
SYNE1-217ENST00000466159 NTMT1Q9BV86 223 aa8.76□□□□□ -1.01
SYNE1-217ENST00000466159 RNF208Q9H0X6 261 aa8.76□□□□□ -1.01
SYNE1-217ENST00000466159 IKZF5Q9H5V7 419 aa8.76□□□□□ -1.01
SYNE1-217ENST00000466159 RC3H2Q9HBD1 1191 aaKnown RBP8.76□□□□□ -1.01
SYNE1-217ENST00000466159 EIF3LQ9Y262 564 aaKnown RBP8.76□□□□□ -1.01
SYNE1-217ENST00000466159 KRT87PA6NCN2 255 aa8.76□□□□□ -1.01
SYNE1-217ENST00000466159 LEFTY2O00292 366 aa8.76□□□□□ -1.01
SYNE1-217ENST00000466159 MANBAO00462 879 aa8.76□□□□□ -1.01
SYNE1-217ENST00000466159 STK16O75716 305 aa8.76□□□□□ -1.01
SYNE1-217ENST00000466159 KCNH1O95259 989 aa8.76□□□□□ -1.01
SYNE1-217ENST00000466159 SNAP29O95721 258 aa8.76□□□□□ -1.01
SYNE1-217ENST00000466159 EPORP19235 508 aa8.76□□□□□ -1.01
SYNE1-217ENST00000466159 NFKBIAP25963 317 aa8.76□□□□□ -1.01
SYNE1-217ENST00000466159 NSG1P42857 185 aa8.76□□□□□ -1.01
SYNE1-217ENST00000466159 RPS9P46781 194 aaKnown RBP8.76□□□□□ -1.01
SYNE1-217ENST00000466159 GNPDA1P46926 289 aa8.76□□□□□ -1.01
SYNE1-217ENST00000466159 RPIAP49247 311 aa8.76□□□□□ -1.01
SYNE1-217ENST00000466159 SNRPD1P62314 119 aaKnown RBP8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms