RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 EXD3Q8N9H8 876 aa17.34■□□□□ 0.37
COL7A1-205ENST00000465238 OR10G6Q8NH81 332 aa17.34■□□□□ 0.37
COL7A1-205ENST00000465238 EXTL1Q92935 676 aa17.34■□□□□ 0.37
COL7A1-205ENST00000465238 ART4Q93070 314 aa17.34■□□□□ 0.37
COL7A1-205ENST00000465238 AHCYL2Q96HN2 611 aaKnown RBP17.34■□□□□ 0.37
COL7A1-205ENST00000465238 DDA1Q9BW61 102 aa17.34■□□□□ 0.37
COL7A1-205ENST00000465238 ASPSCR1Q9BZE9 553 aa17.34■□□□□ 0.37
COL7A1-205ENST00000465238 ZMYND15Q9H091 742 aa17.34■□□□□ 0.37
COL7A1-205ENST00000465238 STN1Q9H668 368 aaKnown RBP17.34■□□□□ 0.37
COL7A1-205ENST00000465238 C20orf96Q9NUD7 363 aaPredicted RBP17.34■□□□□ 0.37
COL7A1-205ENST00000465238 PDP2Q9P2J9 529 aa17.34■□□□□ 0.37
COL7A1-205ENST00000465238 TBC1D29Q9UFV1 150 aa17.34■□□□□ 0.37
COL7A1-205ENST00000465238 ZC3H7BQ9UGR2 993 aaKnown RBP17.34■□□□□ 0.37
COL7A1-205ENST00000465238 CHMP2BQ9UQN3 213 aa17.34■□□□□ 0.37
COL7A1-205ENST00000465238 TRBV23OR9-2A0A075B6M9 112 aa17.33■□□□□ 0.36
COL7A1-205ENST00000465238 MGAT4DA6NG13 374 aa17.33■□□□□ 0.36
COL7A1-205ENST00000465238 PDZK1P1A8MUH7 402 aa17.33■□□□□ 0.36
COL7A1-205ENST00000465238 SGTAO43765 313 aa17.33■□□□□ 0.36
COL7A1-205ENST00000465238 DUX1O43812 170 aa17.33■□□□□ 0.36
COL7A1-205ENST00000465238 OR1I1O60431 355 aa17.33■□□□□ 0.36
COL7A1-205ENST00000465238 OR56A5P0C7T3 313 aa17.33■□□□□ 0.36
COL7A1-205ENST00000465238 PRLHRP49683 370 aa17.33■□□□□ 0.36
COL7A1-205ENST00000465238 ANKMY2Q8IV38 441 aa17.33■□□□□ 0.36
COL7A1-205ENST00000465238 IGDCC3Q8IVU1 814 aa17.33■□□□□ 0.36
COL7A1-205ENST00000465238 GPR150Q8NGU9 434 aa17.33■□□□□ 0.36
COL7A1-205ENST00000465238 OR2L2Q8NH16 312 aa17.33■□□□□ 0.36
COL7A1-205ENST00000465238 GABPB2Q8TAK5 448 aaPredicted RBP17.33■□□□□ 0.36
COL7A1-205ENST00000465238 CALML6Q8TD86 181 aa17.33■□□□□ 0.36
COL7A1-205ENST00000465238 SH3KBP1Q96B97 665 aa17.33■□□□□ 0.36
COL7A1-205ENST00000465238 CFAP36Q96G28 342 aa17.33■□□□□ 0.36
COL7A1-205ENST00000465238 LINC00615Q96LM1 132 aaPredicted RBP17.33■□□□□ 0.36
COL7A1-205ENST00000465238 TCF12Q99081 682 aa17.33■□□□□ 0.36
COL7A1-205ENST00000465238 CCM2Q9BSQ5 444 aa17.33■□□□□ 0.36
COL7A1-205ENST00000465238 SARS2Q9NP81 518 aaKnown RBP17.33■□□□□ 0.36
COL7A1-205ENST00000465238 PRDM8Q9NQV8 689 aa17.33■□□□□ 0.36
COL7A1-205ENST00000465238 FAM114A2Q9NRY5 505 aa17.33■□□□□ 0.36
COL7A1-205ENST00000465238 TEX264Q9Y6I9 313 aa17.33■□□□□ 0.36
COL7A1-205ENST00000465238 ESYT3A0FGR9 886 aa17.32■□□□□ 0.36
COL7A1-205ENST00000465238 OR5K4A6NMS3 321 aa17.32■□□□□ 0.36
COL7A1-205ENST00000465238 B4E171 279 aa17.32■□□□□ 0.36
COL7A1-205ENST00000465238 E7ESA3 106 aa17.32■□□□□ 0.36
COL7A1-205ENST00000465238 EIF3HO15372 352 aaKnown RBP eCLIP17.32■□□□□ 0.36
COL7A1-205ENST00000465238 EML2O95834 649 aa17.32■□□□□ 0.36
COL7A1-205ENST00000465238 FTH1P02794 183 aa17.32■□□□□ 0.36
COL7A1-205ENST00000465238 SFTPCP11686 197 aa17.32■□□□□ 0.36
COL7A1-205ENST00000465238 F3P13726 295 aa17.32■□□□□ 0.36
COL7A1-205ENST00000465238 OGNP20774 298 aaKnown RBP17.32■□□□□ 0.36
COL7A1-205ENST00000465238 MPSTP25325 297 aa17.32■□□□□ 0.36
COL7A1-205ENST00000465238 DEKP35659 375 aaKnown RBP17.32■□□□□ 0.36
COL7A1-205ENST00000465238 TSPAN7P41732 249 aa17.32■□□□□ 0.36
COL7A1-205ENST00000465238 PPM1FP49593 454 aaPredicted RBP17.32■□□□□ 0.36
COL7A1-205ENST00000465238 RAB15P59190 212 aa17.32■□□□□ 0.36
COL7A1-205ENST00000465238 HHEXQ03014 270 aa17.32■□□□□ 0.36
COL7A1-205ENST00000465238 DMPKQ09013 629 aa17.32■□□□□ 0.36
COL7A1-205ENST00000465238 CRYMQ14894 314 aa17.32■□□□□ 0.36
COL7A1-205ENST00000465238 TRADDQ15628 312 aa17.32■□□□□ 0.36
COL7A1-205ENST00000465238 RNF187Q5TA31 235 aaPredicted RBP17.32■□□□□ 0.36
COL7A1-205ENST00000465238 ZNF449Q6P9G9 518 aa17.32■□□□□ 0.36
COL7A1-205ENST00000465238 IYDQ6PHW0 289 aa17.32■□□□□ 0.36
COL7A1-205ENST00000465238 WDR74Q6RFH5 385 aaPredicted RBP17.32■□□□□ 0.36
COL7A1-205ENST00000465238 ZNF761Q86XN6 746 aaPredicted RBP17.32■□□□□ 0.36
COL7A1-205ENST00000465238 LMNTD2Q8IXW0 634 aa17.32■□□□□ 0.36
COL7A1-205ENST00000465238 NKD1Q969G9 470 aa17.32■□□□□ 0.36
COL7A1-205ENST00000465238 SLC39A1Q9NY26 324 aa17.32■□□□□ 0.36
COL7A1-205ENST00000465238 IL1RAPL1Q9NZN1 696 aa17.32■□□□□ 0.36
COL7A1-205ENST00000465238 TMEM9Q9P0T7 183 aa17.32■□□□□ 0.36
COL7A1-205ENST00000465238 FAM8A1Q9UBU6 413 aa17.32■□□□□ 0.36
COL7A1-205ENST00000465238 B3GALT1Q9Y5Z6 326 aa17.32■□□□□ 0.36
COL7A1-205ENST00000465238 PRSS21Q9Y6M0 314 aa17.32■□□□□ 0.36
COL7A1-205ENST00000465238 C17orf113A0A1B0GUU1 675 aa17.31■□□□□ 0.36
COL7A1-205ENST00000465238 UBA6A0AVT1 1052 aaPredicted RBP17.31■□□□□ 0.36
COL7A1-205ENST00000465238 PRMT5O14744 637 aaPredicted RBP17.31■□□□□ 0.36
COL7A1-205ENST00000465238 SLC28A2O43868 658 aa17.31■□□□□ 0.36
COL7A1-205ENST00000465238 GSTM1P09488 218 aa17.31■□□□□ 0.36
COL7A1-205ENST00000465238 WT1P19544 449 aaPredicted RBP17.31■□□□□ 0.36
COL7A1-205ENST00000465238 RPL10P27635 214 aaKnown RBP17.31■□□□□ 0.36
COL7A1-205ENST00000465238 HALP42357 657 aa17.31■□□□□ 0.36
COL7A1-205ENST00000465238 GSTM4Q03013 218 aa17.31■□□□□ 0.36
COL7A1-205ENST00000465238 CBLBQ13191 982 aa17.31■□□□□ 0.36
COL7A1-205ENST00000465238 NFE2L1Q14494 772 aa17.31■□□□□ 0.36
COL7A1-205ENST00000465238 SEPT7Q16181 437 aaKnown RBP17.31■□□□□ 0.36
COL7A1-205ENST00000465238 DCAF12Q5T6F0 453 aa17.31■□□□□ 0.36
COL7A1-205ENST00000465238 ZNF470Q6ECI4 717 aa17.31■□□□□ 0.36
COL7A1-205ENST00000465238 UNC5AQ6ZN44 842 aa17.31■□□□□ 0.36
COL7A1-205ENST00000465238 SLC9B2Q86UD5 537 aa17.31■□□□□ 0.36
COL7A1-205ENST00000465238 KCNMB4Q86W47 210 aa17.31■□□□□ 0.36
COL7A1-205ENST00000465238 LRRC6Q86X45 466 aa17.31■□□□□ 0.36
COL7A1-205ENST00000465238 FAM129CQ86XR2 697 aa17.31■□□□□ 0.36
COL7A1-205ENST00000465238 CFAP206Q8IYR0 622 aa17.31■□□□□ 0.36
COL7A1-205ENST00000465238 ZBED8Q8IZ13 594 aa17.31■□□□□ 0.36
COL7A1-205ENST00000465238 AVL9Q8NBF6 648 aa17.31■□□□□ 0.36
COL7A1-205ENST00000465238 FBXO36Q8NEA4 188 aa17.31■□□□□ 0.36
COL7A1-205ENST00000465238 FBXO25Q8TCJ0 367 aa17.31■□□□□ 0.36
COL7A1-205ENST00000465238 HM13Q8TCT9 377 aa17.31■□□□□ 0.36
COL7A1-205ENST00000465238 PYROXD1Q8WU10 500 aa17.31■□□□□ 0.36
COL7A1-205ENST00000465238 JPH3Q8WXH2 748 aaPredicted RBP17.31■□□□□ 0.36
COL7A1-205ENST00000465238 SEC14L1Q92503 715 aa17.31■□□□□ 0.36
COL7A1-205ENST00000465238 PMEPA1Q969W9 287 aa17.31■□□□□ 0.36
COL7A1-205ENST00000465238 TEFMQ96QE5 360 aaKnown RBP17.31■□□□□ 0.36
COL7A1-205ENST00000465238 FAM167BQ9BTA0 163 aa17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms