RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 TMEM175Q9BSA9 504 aa8.21□□□□□ -1.09
CD44-208ENST00000428726 TTLL2Q9BWV7 592 aa8.21□□□□□ -1.09
CD44-208ENST00000428726 ACTR8Q9H981 624 aa8.21□□□□□ -1.09
CD44-208ENST00000428726 NIPSNAP3AQ9UFN0 247 aaPredicted RBP8.21□□□□□ -1.09
CD44-208ENST00000428726 CNOT6Q9ULM6 557 aaKnown RBP8.21□□□□□ -1.09
CD44-208ENST00000428726 ZFC3H1O60293 1989 aaKnown RBP8.21□□□□□ -1.09
CD44-208ENST00000428726 E2F3O00716 465 aa8.21□□□□□ -1.1
CD44-208ENST00000428726 TAPBPO15533 448 aa8.21□□□□□ -1.1
CD44-208ENST00000428726 KERAO60938 352 aa8.21□□□□□ -1.1
CD44-208ENST00000428726 CLTBP09497 229 aa8.21□□□□□ -1.1
CD44-208ENST00000428726 EN2P19622 333 aaPredicted RBP8.21□□□□□ -1.1
CD44-208ENST00000428726 HALP42357 657 aa8.21□□□□□ -1.1
CD44-208ENST00000428726 SLC6A11P48066 632 aa8.21□□□□□ -1.1
CD44-208ENST00000428726 CLCN7P51798 805 aa8.21□□□□□ -1.1
CD44-208ENST00000428726 NFKB2Q00653 900 aa8.21□□□□□ -1.1
CD44-208ENST00000428726 LIPEQ05469 1076 aa8.21□□□□□ -1.1
CD44-208ENST00000428726 STX5Q13190 355 aa8.21□□□□□ -1.1
CD44-208ENST00000428726 SQLEQ14534 574 aa8.21□□□□□ -1.1
CD44-208ENST00000428726 CRY1Q16526 586 aa8.21□□□□□ -1.1
CD44-208ENST00000428726 RETSATQ6NUM9 610 aa8.21□□□□□ -1.1
CD44-208ENST00000428726 NECAB2Q7Z6G3 386 aa8.21□□□□□ -1.1
CD44-208ENST00000428726 C12orf40Q86WS4 652 aa8.21□□□□□ -1.1
CD44-208ENST00000428726 KIAA2013Q8IYS2 634 aa8.21□□□□□ -1.1
CD44-208ENST00000428726 LRRC58Q96CX6 371 aa8.21□□□□□ -1.1
CD44-208ENST00000428726 ASB2Q96Q27 587 aa8.21□□□□□ -1.1
CD44-208ENST00000428726 HAUS8Q9BT25 410 aa8.21□□□□□ -1.1
CD44-208ENST00000428726 C2orf49Q9BVC5 232 aaPredicted RBP8.21□□□□□ -1.1
CD44-208ENST00000428726 BRD9Q9H8M2 597 aa8.21□□□□□ -1.1
CD44-208ENST00000428726 SYTL2Q9HCH5 934 aa8.21□□□□□ -1.1
CD44-208ENST00000428726 MOSPD1Q9UJG1 213 aa8.21□□□□□ -1.1
CD44-208ENST00000428726 LSM7Q9UK45 103 aaKnown RBP8.21□□□□□ -1.1
CD44-208ENST00000428726 ZNF490Q9ULM2 529 aaPredicted RBP8.21□□□□□ -1.1
CD44-208ENST00000428726 OAZ3Q9UMX2 235 aa8.21□□□□□ -1.1
CD44-208ENST00000428726 TRIM38O00635 465 aa8.21□□□□□ -1.1
CD44-208ENST00000428726 OR7A17O14581 309 aa8.21□□□□□ -1.1
CD44-208ENST00000428726 CASQ2O14958 399 aaPredicted RBP8.21□□□□□ -1.1
CD44-208ENST00000428726 CPSF4O95639 269 aaKnown RBP8.21□□□□□ -1.1
CD44-208ENST00000428726 SMIM18P0DKX4 95 aa8.21□□□□□ -1.1
CD44-208ENST00000428726 ZNF23P17027 643 aa8.21□□□□□ -1.1
CD44-208ENST00000428726 SLC6A2P23975 617 aa8.21□□□□□ -1.1
CD44-208ENST00000428726 TTPAP49638 278 aa8.21□□□□□ -1.1
CD44-208ENST00000428726 SUOXP51687 545 aa8.21□□□□□ -1.1
CD44-208ENST00000428726 PTSQ03393 145 aa8.21□□□□□ -1.1
CD44-208ENST00000428726 ATP6AP1LQ52LC2 224 aa8.21□□□□□ -1.1
CD44-208ENST00000428726 ZFP1Q6P2D0 407 aa8.21□□□□□ -1.1
CD44-208ENST00000428726 TBPL2Q6SJ96 375 aa8.21□□□□□ -1.1
CD44-208ENST00000428726 SBSNQ6UWP8 590 aa8.21□□□□□ -1.1
CD44-208ENST00000428726 HSD11B1LQ7Z5J1 315 aa8.21□□□□□ -1.1
CD44-208ENST00000428726 ZNF786Q8N393 782 aa8.21□□□□□ -1.1
CD44-208ENST00000428726 FAM47BQ8NA70 645 aa8.21□□□□□ -1.1
CD44-208ENST00000428726 PDZD8Q8NEN9 1154 aa8.21□□□□□ -1.1
CD44-208ENST00000428726 APOLD1Q96LR9 279 aa8.21□□□□□ -1.1
CD44-208ENST00000428726 CCT7Q99832 543 aa8.21□□□□□ -1.1
CD44-208ENST00000428726 ARMC7Q9H6L4 198 aa8.21□□□□□ -1.1
CD44-208ENST00000428726 VCX3AQ9NNX9 186 aa8.21□□□□□ -1.1
CD44-208ENST00000428726 INTS10Q9NVR2 710 aaKnown RBP8.21□□□□□ -1.1
CD44-208ENST00000428726 C6orf203Q9P0P8 240 aaPredicted RBP8.21□□□□□ -1.1
CD44-208ENST00000428726 DNMT3BQ9UBC3 853 aaKnown RBP8.21□□□□□ -1.1
CD44-208ENST00000428726 TBC1D30Q9Y2I9 924 aa8.21□□□□□ -1.1
CD44-208ENST00000428726 ARID1BQ8NFD5 2236 aaPredicted RBP8.2□□□□□ -1.1
CD44-208ENST00000428726 PITPNM1O00562 1244 aa8.2□□□□□ -1.1
CD44-208ENST00000428726 GRM6O15303 877 aa8.2□□□□□ -1.1
CD44-208ENST00000428726 TLL1O43897 1013 aa8.2□□□□□ -1.1
CD44-208ENST00000428726 GREM1O60565 184 aa8.2□□□□□ -1.1
CD44-208ENST00000428726 SLC22A3O75751 556 aa8.2□□□□□ -1.1
CD44-208ENST00000428726 WDR47O94967 919 aa8.2□□□□□ -1.1
CD44-208ENST00000428726 ZBTB11O95625 1053 aaPredicted RBP8.2□□□□□ -1.1
CD44-208ENST00000428726 TRBC1P01850 177 aa8.2□□□□□ -1.1
CD44-208ENST00000428726 CYP4B1P13584 511 aa8.2□□□□□ -1.1
CD44-208ENST00000428726 XPAP23025 273 aaPredicted RBP8.2□□□□□ -1.1
CD44-208ENST00000428726 POLR2IP36954 125 aaKnown RBP8.2□□□□□ -1.1
CD44-208ENST00000428726 BDKRB1P46663 353 aa8.2□□□□□ -1.1
CD44-208ENST00000428726 MASP1P48740 699 aa8.2□□□□□ -1.1
CD44-208ENST00000428726 RPIAP49247 311 aa8.2□□□□□ -1.1
CD44-208ENST00000428726 PSMD7P51665 324 aa8.2□□□□□ -1.1
CD44-208ENST00000428726 CTSCP53634 463 aa8.2□□□□□ -1.1
CD44-208ENST00000428726 B4GALNT1Q00973 533 aa8.2□□□□□ -1.1
CD44-208ENST00000428726 C16orf72Q14CZ0 275 aa8.2□□□□□ -1.1
CD44-208ENST00000428726 RARS2Q5T160 578 aaKnown RBP8.2□□□□□ -1.1
CD44-208ENST00000428726 KRT80Q6KB66 452 aa8.2□□□□□ -1.1
CD44-208ENST00000428726 LIX1Q8N485 282 aa8.2□□□□□ -1.1
CD44-208ENST00000428726 HJURPQ8NCD3 748 aaPredicted RBP8.2□□□□□ -1.1
CD44-208ENST00000428726 RHEBL1Q8TAI7 183 aa8.2□□□□□ -1.1
CD44-208ENST00000428726 JPH3Q8WXH2 748 aaPredicted RBP8.2□□□□□ -1.1
CD44-208ENST00000428726 OVCA2Q8WZ82 227 aa8.2□□□□□ -1.1
CD44-208ENST00000428726 ELMO1Q92556 727 aa8.2□□□□□ -1.1
CD44-208ENST00000428726 ALG14Q96F25 216 aa8.2□□□□□ -1.1
CD44-208ENST00000428726 IL17FQ96PD4 163 aa8.2□□□□□ -1.1
CD44-208ENST00000428726 MACROD1Q9BQ69 325 aa8.2□□□□□ -1.1
CD44-208ENST00000428726 DPH2Q9BQC3 489 aaPredicted RBP8.2□□□□□ -1.1
CD44-208ENST00000428726 INPP5KQ9BT40 448 aa8.2□□□□□ -1.1
CD44-208ENST00000428726 RIOK2Q9BVS4 552 aaKnown RBP8.2□□□□□ -1.1
CD44-208ENST00000428726 TMEM165Q9HC07 324 aa8.2□□□□□ -1.1
CD44-208ENST00000428726 PCDH12Q9NPG4 1184 aa8.2□□□□□ -1.1
CD44-208ENST00000428726 MRPL40Q9NQ50 206 aaKnown RBP8.2□□□□□ -1.1
CD44-208ENST00000428726 ASAH2Q9NR71 780 aa8.2□□□□□ -1.1
CD44-208ENST00000428726 SARDHQ9UL12 918 aa8.2□□□□□ -1.1
CD44-208ENST00000428726 DOLKQ9UPQ8 538 aa8.2□□□□□ -1.1
CD44-208ENST00000428726 INVSQ9Y283 1065 aa8.2□□□□□ -1.1
CD44-208ENST00000428726 DLGAP4Q9Y2H0 992 aa8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms