RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 MLYCDO95822 493 aa10.52□□□□□ -0.73
USP54-204ENST00000422491 LGALS2P05162 132 aa10.52□□□□□ -0.73
USP54-204ENST00000422491 PGK2P07205 417 aa10.52□□□□□ -0.73
USP54-204ENST00000422491 RETP07949 1114 aa10.52□□□□□ -0.73
USP54-204ENST00000422491 TXNP10599 105 aaKnown RBP10.52□□□□□ -0.73
USP54-204ENST00000422491 EFNA1P20827 205 aaPredicted RBP10.52□□□□□ -0.73
USP54-204ENST00000422491 HOXC13P31276 330 aa10.52□□□□□ -0.73
USP54-204ENST00000422491 KRT20P35900 424 aa10.52□□□□□ -0.73
USP54-204ENST00000422491 NRIP1P48552 1158 aa10.52□□□□□ -0.73
USP54-204ENST00000422491 LILRA4P59901 499 aa10.52□□□□□ -0.73
USP54-204ENST00000422491 CYP4F3Q08477 520 aa10.52□□□□□ -0.73
USP54-204ENST00000422491 MAD2L1BPQ15013 274 aaPredicted RBP10.52□□□□□ -0.73
USP54-204ENST00000422491 SYT16Q17RD7 645 aa10.52□□□□□ -0.73
USP54-204ENST00000422491 SV2CQ496J9 727 aa10.52□□□□□ -0.73
USP54-204ENST00000422491 CPZQ66K79 652 aa10.52□□□□□ -0.73
USP54-204ENST00000422491 SIGIRRQ6IA17 410 aa10.52□□□□□ -0.73
USP54-204ENST00000422491 TIGD7Q6NT04 549 aaPredicted RBP10.52□□□□□ -0.73
USP54-204ENST00000422491 CYP20A1Q6UW02 462 aa10.52□□□□□ -0.73
USP54-204ENST00000422491 PRR23CQ6ZRP0 262 aa10.52□□□□□ -0.73
USP54-204ENST00000422491 GPR149Q86SP6 731 aa10.52□□□□□ -0.73
USP54-204ENST00000422491 NIM1KQ8IY84 436 aa10.52□□□□□ -0.73
USP54-204ENST00000422491 MICU2Q8IYU8 434 aa10.52□□□□□ -0.73
USP54-204ENST00000422491 TOP6BLQ8N6T0 577 aa10.52□□□□□ -0.73
USP54-204ENST00000422491 IMP4Q96G21 291 aaKnown RBP10.52□□□□□ -0.73
USP54-204ENST00000422491 MED30Q96HR3 178 aa10.52□□□□□ -0.73
USP54-204ENST00000422491 TBATAQ96M53 351 aa10.52□□□□□ -0.73
USP54-204ENST00000422491 DERL2Q9GZP9 239 aa10.52□□□□□ -0.73
USP54-204ENST00000422491 SIK2Q9H0K1 926 aa10.52□□□□□ -0.73
USP54-204ENST00000422491 RIBC2Q9H4K1 309 aa10.52□□□□□ -0.73
USP54-204ENST00000422491 CRTAC1Q9NQ79 661 aa10.52□□□□□ -0.73
USP54-204ENST00000422491 PCDHGB6Q9Y5F9 930 aa10.52□□□□□ -0.73
USP54-204ENST00000422491 MRPL42Q9Y6G3 142 aaKnown RBP10.52□□□□□ -0.73
USP54-204ENST00000422491 STX16O14662 325 aa10.51□□□□□ -0.73
USP54-204ENST00000422491 KLK8O60259 260 aa10.51□□□□□ -0.73
USP54-204ENST00000422491 FAM20BO75063 409 aa10.51□□□□□ -0.73
USP54-204ENST00000422491 PGLSO95336 258 aa10.51□□□□□ -0.73
USP54-204ENST00000422491 MSH3P20585 1137 aa10.51□□□□□ -0.73
USP54-204ENST00000422491 PPP3CCP48454 512 aa10.51□□□□□ -0.73
USP54-204ENST00000422491 DAPP51397 102 aa10.51□□□□□ -0.73
USP54-204ENST00000422491 OR2B6P58173 313 aa10.51□□□□□ -0.73
USP54-204ENST00000422491 TSNQ15631 228 aaKnown RBP10.51□□□□□ -0.73
USP54-204ENST00000422491 SETMARQ53H47 684 aaPredicted RBP10.51□□□□□ -0.73
USP54-204ENST00000422491 PRSS36Q5K4E3 855 aa10.51□□□□□ -0.73
USP54-204ENST00000422491 MANEALQ5VSG8 457 aa10.51□□□□□ -0.73
USP54-204ENST00000422491 AFMIDQ63HM1 303 aa10.51□□□□□ -0.73
USP54-204ENST00000422491 LRRC8DQ7L1W4 858 aa10.51□□□□□ -0.73
USP54-204ENST00000422491 MSRB3Q8IXL7 192 aa10.51□□□□□ -0.73
USP54-204ENST00000422491 FLAD1Q8NFF5 587 aa10.51□□□□□ -0.73
USP54-204ENST00000422491 FUBP1Q96AE4 644 aaKnown RBP10.51□□□□□ -0.73
USP54-204ENST00000422491 ST6GAL2Q96JF0 529 aa10.51□□□□□ -0.73
USP54-204ENST00000422491 AARSD1Q9BTE6 412 aaKnown RBP10.51□□□□□ -0.73
USP54-204ENST00000422491 SPATC1LQ9H0A9 340 aa10.51□□□□□ -0.73
USP54-204ENST00000422491 GALPQ9UBC7 116 aa10.51□□□□□ -0.73
USP54-204ENST00000422491 HACL1Q9UJ83 578 aa10.51□□□□□ -0.73
USP54-204ENST00000422491 CDH9Q9ULB4 789 aa10.51□□□□□ -0.73
USP54-204ENST00000422491 NDRG4Q9ULP0 352 aaKnown RBP10.51□□□□□ -0.73
USP54-204ENST00000422491 KCNH4Q9UQ05 1017 aa10.51□□□□□ -0.73
USP54-204ENST00000422491 ANGPTL3Q9Y5C1 460 aa10.51□□□□□ -0.73
USP54-204ENST00000422491 MAU2Q9Y6X3 613 aa10.51□□□□□ -0.73
USP54-204ENST00000422491 PCNTO95613 3336 aa10.51□□□□□ -0.73
USP54-204ENST00000422491 HHLA1C9JL84 531 aa10.51□□□□□ -0.73
USP54-204ENST00000422491 M0R082 166 aa10.51□□□□□ -0.73
USP54-204ENST00000422491 OR4F21O95013 312 aa10.51□□□□□ -0.73
USP54-204ENST00000422491 PEX11BO96011 259 aa10.51□□□□□ -0.73
USP54-204ENST00000422491 DBTP11182 482 aaKnown RBP10.51□□□□□ -0.73
USP54-204ENST00000422491 DEFA1P59665 94 aa10.51□□□□□ -0.73
USP54-204ENST00000422491 DEFA3P59666 94 aa10.51□□□□□ -0.73
USP54-204ENST00000422491 GNG2P59768 71 aa10.51□□□□□ -0.73
USP54-204ENST00000422491 GALK2Q01415 458 aa10.51□□□□□ -0.73
USP54-204ENST00000422491 ACVR1Q04771 509 aa10.51□□□□□ -0.73
USP54-204ENST00000422491 MFSD10Q14728 455 aa10.51□□□□□ -0.73
USP54-204ENST00000422491 ZFP69Q49AA0 526 aa10.51□□□□□ -0.73
USP54-204ENST00000422491 NXNL2Q5VZ03 156 aa10.51□□□□□ -0.73
USP54-204ENST00000422491 WSCD1Q658N2 575 aa10.51□□□□□ -0.73
USP54-204ENST00000422491 KDM4DQ6B0I6 523 aa10.51□□□□□ -0.73
USP54-204ENST00000422491 RFPL4BQ6ZWI9 263 aa10.51□□□□□ -0.73
USP54-204ENST00000422491 GATAD2AQ86YP4 633 aa10.51□□□□□ -0.73
USP54-204ENST00000422491 CCDC71Q8IV32 467 aaPredicted RBP10.51□□□□□ -0.73
USP54-204ENST00000422491 AMER2Q8N7J2 671 aa10.51□□□□□ -0.73
USP54-204ENST00000422491 HCAR2Q8TDS4 363 aa10.51□□□□□ -0.73
USP54-204ENST00000422491 GTF2H4Q92759 462 aa10.51□□□□□ -0.73
USP54-204ENST00000422491 RNF34Q969K3 372 aa10.51□□□□□ -0.73
USP54-204ENST00000422491 SDHCQ99643 169 aaPredicted RBP10.51□□□□□ -0.73
USP54-204ENST00000422491 GDF15Q99988 308 aa10.51□□□□□ -0.73
USP54-204ENST00000422491 THUMPD3Q9BV44 507 aaKnown RBP10.51□□□□□ -0.73
USP54-204ENST00000422491 PRDM8Q9NQV8 689 aa10.51□□□□□ -0.73
USP54-204ENST00000422491 PDGFCQ9NRA1 345 aa10.51□□□□□ -0.73
USP54-204ENST00000422491 DDX28Q9NUL7 540 aaKnown RBP10.51□□□□□ -0.73
USP54-204ENST00000422491 ADPRHL2Q9NX46 363 aa10.51□□□□□ -0.73
USP54-204ENST00000422491 SLC25A37Q9NYZ2 338 aa10.51□□□□□ -0.73
USP54-204ENST00000422491 KLK14Q9P0G3 267 aa10.51□□□□□ -0.73
USP54-204ENST00000422491 CRNNQ9UBG3 495 aaPredicted RBP10.51□□□□□ -0.73
USP54-204ENST00000422491 RNF6Q9Y252 685 aa10.51□□□□□ -0.73
USP54-204ENST00000422491 MED16Q9Y2X0 877 aa10.51□□□□□ -0.73
USP54-204ENST00000422491 ASB1Q9Y576 335 aa10.51□□□□□ -0.73
USP54-204ENST00000422491 GMPPBQ9Y5P6 360 aa10.51□□□□□ -0.73
USP54-204ENST00000422491 WDR90Q96KV7 1748 aa10.51□□□□□ -0.73
USP54-204ENST00000422491 CDC7O00311 574 aa10.5□□□□□ -0.73
USP54-204ENST00000422491 CD3EAPO15446 510 aaKnown RBP10.5□□□□□ -0.73
USP54-204ENST00000422491 WBP4O75554 376 aaKnown RBP10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms