RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 UNC45BQ8IWX7 931 aa6.43□□□□□ -1.38
USP40-202ENST00000409945 SCML4Q8N228 414 aa6.43□□□□□ -1.38
USP40-202ENST00000409945 FAM71DQ8N9W8 422 aa6.43□□□□□ -1.38
USP40-202ENST00000409945 ABHD11Q8NFV4 315 aa6.43□□□□□ -1.38
USP40-202ENST00000409945 LMO3Q8TAP4 145 aa6.43□□□□□ -1.38
USP40-202ENST00000409945 NEU4Q8WWR8 484 aaPredicted RBP6.43□□□□□ -1.38
USP40-202ENST00000409945 FAM149B1Q96BN6 582 aa6.43□□□□□ -1.38
USP40-202ENST00000409945 REPS1Q96D71 796 aa6.43□□□□□ -1.38
USP40-202ENST00000409945 KTI12Q96EK9 354 aaPredicted RBP6.43□□□□□ -1.38
USP40-202ENST00000409945 TBATAQ96M53 351 aa6.43□□□□□ -1.38
USP40-202ENST00000409945 LRRC3BQ96PB8 259 aa6.43□□□□□ -1.38
USP40-202ENST00000409945 ULBP1Q9BZM6 244 aa6.43□□□□□ -1.38
USP40-202ENST00000409945 CIPCQ9C0C6 399 aa6.43□□□□□ -1.38
USP40-202ENST00000409945 HPS4Q9NQG7 708 aa6.43□□□□□ -1.38
USP40-202ENST00000409945 TMEM30AQ9NV96 361 aa6.43□□□□□ -1.38
USP40-202ENST00000409945 DLGAP2Q9P1A6 1054 aa6.43□□□□□ -1.38
USP40-202ENST00000409945 LRIT1Q9P2V4 623 aa6.43□□□□□ -1.38
USP40-202ENST00000409945 DEC1Q9P2X7 70 aa6.43□□□□□ -1.38
USP40-202ENST00000409945 DNAJC12Q9UKB3 198 aa6.43□□□□□ -1.38
USP40-202ENST00000409945 HBS1LQ9Y450 684 aaKnown RBP6.43□□□□□ -1.38
USP40-202ENST00000409945 MTF2Q9Y483 593 aaPredicted RBP6.43□□□□□ -1.38
USP40-202ENST00000409945 HELZP42694 1942 aaKnown RBP6.43□□□□□ -1.38
USP40-202ENST00000409945 ANAPC1Q9H1A4 1944 aa6.43□□□□□ -1.38
USP40-202ENST00000409945 F5P12259 2224 aa6.43□□□□□ -1.38
USP40-202ENST00000409945 TCRBV5S1A1TA0A578 114 aa6.42□□□□□ -1.38
USP40-202ENST00000409945 PRYO14603 147 aa6.42□□□□□ -1.38
USP40-202ENST00000409945 HOXC11O43248 304 aaPredicted RBP6.42□□□□□ -1.38
USP40-202ENST00000409945 TMPRSS11DO60235 418 aa6.42□□□□□ -1.38
USP40-202ENST00000409945 NPSP0C0P6 89 aa6.42□□□□□ -1.38
USP40-202ENST00000409945 SP9P0CG40 484 aa6.42□□□□□ -1.38
USP40-202ENST00000409945 NDUFB7P17568 137 aa6.42□□□□□ -1.38
USP40-202ENST00000409945 DESP17661 470 aa6.42□□□□□ -1.38
USP40-202ENST00000409945 PON1P27169 355 aa6.42□□□□□ -1.38
USP40-202ENST00000409945 ZNF362Q5T0B9 420 aaPredicted RBP6.42□□□□□ -1.38
USP40-202ENST00000409945 TSTD2Q5T7W7 516 aa6.42□□□□□ -1.38
USP40-202ENST00000409945 BSPRYQ5W0U4 402 aa6.42□□□□□ -1.38
USP40-202ENST00000409945 NUGGCQ68CJ6 796 aa6.42□□□□□ -1.38
USP40-202ENST00000409945 PM20D1Q6GTS8 502 aa6.42□□□□□ -1.38
USP40-202ENST00000409945 ARHGAP30Q7Z6I6 1101 aaPredicted RBP6.42□□□□□ -1.38
USP40-202ENST00000409945 NEK11Q8NG66 645 aa6.42□□□□□ -1.38
USP40-202ENST00000409945 SLC2A12Q8TD20 617 aa6.42□□□□□ -1.38
USP40-202ENST00000409945 UCMAQ8WVF2 138 aa6.42□□□□□ -1.38
USP40-202ENST00000409945 ZNF606Q8WXB4 792 aa6.42□□□□□ -1.38
USP40-202ENST00000409945 COQ10AQ96MF6 247 aa6.42□□□□□ -1.38
USP40-202ENST00000409945 SPAG5Q96R06 1193 aa6.42□□□□□ -1.38
USP40-202ENST00000409945 BBS2Q9BXC9 721 aa6.42□□□□□ -1.38
USP40-202ENST00000409945 CLPBQ9H078 707 aa6.42□□□□□ -1.38
USP40-202ENST00000409945 SPHK2Q9NRA0 654 aa6.42□□□□□ -1.38
USP40-202ENST00000409945 NDUFAF4Q9P032 175 aa6.42□□□□□ -1.38
USP40-202ENST00000409945 SLC12A6Q9UHW9 1150 aa6.42□□□□□ -1.38
USP40-202ENST00000409945 ING1Q9UK53 422 aaPredicted RBP6.42□□□□□ -1.38
USP40-202ENST00000409945 B3GNT3Q9Y2A9 372 aa6.42□□□□□ -1.38
USP40-202ENST00000409945 TBC1D3BA6NDS4 549 aa6.42□□□□□ -1.38
USP40-202ENST00000409945 PROB1E7EW31 1015 aa6.42□□□□□ -1.38
USP40-202ENST00000409945 GOLGA6L19H0YKK7 550 aa6.42□□□□□ -1.38
USP40-202ENST00000409945 LATS1O95835 1130 aa6.42□□□□□ -1.38
USP40-202ENST00000409945 HMBSP08397 361 aa6.42□□□□□ -1.38
USP40-202ENST00000409945 TNFRSF4P43489 277 aa6.42□□□□□ -1.38
USP40-202ENST00000409945 RGS7P49802 495 aa6.42□□□□□ -1.38
USP40-202ENST00000409945 ZNF132P52740 706 aa6.42□□□□□ -1.38
USP40-202ENST00000409945 DAOAP59103 153 aa6.42□□□□□ -1.38
USP40-202ENST00000409945 MRPS21P82921 87 aaKnown RBP6.42□□□□□ -1.38
USP40-202ENST00000409945 EFHC1Q5JVL4 640 aa6.42□□□□□ -1.38
USP40-202ENST00000409945 EOGTQ5NDL2 527 aa6.42□□□□□ -1.38
USP40-202ENST00000409945 UBAP2Q5T6F2 1119 aaKnown RBP6.42□□□□□ -1.38
USP40-202ENST00000409945 CACNA2D4Q7Z3S7 1137 aa6.42□□□□□ -1.38
USP40-202ENST00000409945 LUZP1Q86V48 1076 aa6.42□□□□□ -1.38
USP40-202ENST00000409945 ZDHHC17Q8IUH5 632 aa6.42□□□□□ -1.38
USP40-202ENST00000409945 GALNT4Q8N4A0 578 aa6.42□□□□□ -1.38
USP40-202ENST00000409945 TMEM35BQ8NCS4 154 aa6.42□□□□□ -1.38
USP40-202ENST00000409945 PATJQ8NI35 1801 aa6.42□□□□□ -1.38
USP40-202ENST00000409945 SLC35F5Q8WV83 523 aa6.42□□□□□ -1.38
USP40-202ENST00000409945 SHC3Q92529 594 aa6.42□□□□□ -1.38
USP40-202ENST00000409945 MPP4Q96JB8 637 aa6.42□□□□□ -1.38
USP40-202ENST00000409945 SERPINB11Q96P15 392 aa6.42□□□□□ -1.38
USP40-202ENST00000409945 BBC3Q96PG8 261 aaPredicted RBP6.42□□□□□ -1.38
USP40-202ENST00000409945 LINC00597Q9H2U6 94 aa6.42□□□□□ -1.38
USP40-202ENST00000409945 SAMSN1Q9NSI8 373 aaKnown RBP6.42□□□□□ -1.38
USP40-202ENST00000409945 TAB2Q9NYJ8 693 aa6.42□□□□□ -1.38
USP40-202ENST00000409945 GMEB2Q9UKD1 530 aa6.42□□□□□ -1.38
USP40-202ENST00000409945 NEDD8-MDP1E9PL57 170 aa6.41□□□□□ -1.38
USP40-202ENST00000409945 J3KRW8 73 aa6.41□□□□□ -1.38
USP40-202ENST00000409945 QSOX1O00391 747 aa6.41□□□□□ -1.38
USP40-202ENST00000409945 PAPSS2O95340 614 aaPredicted RBP6.41□□□□□ -1.38
USP40-202ENST00000409945 TBX18O95935 607 aa6.41□□□□□ -1.38
USP40-202ENST00000409945 APOEP02649 317 aa6.41□□□□□ -1.38
USP40-202ENST00000409945 SLC2A3P11169 496 aa6.41□□□□□ -1.38
USP40-202ENST00000409945 CHN1P15882 459 aa6.41□□□□□ -1.38
USP40-202ENST00000409945 ZNF37AP17032 561 aaPredicted RBP6.41□□□□□ -1.38
USP40-202ENST00000409945 CORO1AP31146 461 aaKnown RBP6.41□□□□□ -1.38
USP40-202ENST00000409945 PAPOLAP51003 745 aaKnown RBP6.41□□□□□ -1.38
USP40-202ENST00000409945 DGKQP52824 942 aa6.41□□□□□ -1.38
USP40-202ENST00000409945 TXNL4AP83876 142 aaKnown RBP6.41□□□□□ -1.38
USP40-202ENST00000409945 SHC2P98077 582 aa6.41□□□□□ -1.38
USP40-202ENST00000409945 UBXN1Q04323 297 aa6.41□□□□□ -1.38
USP40-202ENST00000409945 CCDC15Q0P6D6 951 aa6.41□□□□□ -1.38
USP40-202ENST00000409945 BYSLQ13895 437 aaKnown RBP6.41□□□□□ -1.38
USP40-202ENST00000409945 EFR3AQ14156 821 aa6.41□□□□□ -1.38
USP40-202ENST00000409945 PUM1Q14671 1186 aaKnown RBP eCLIP6.41□□□□□ -1.38
USP40-202ENST00000409945 MPPE1Q53F39 396 aa6.41□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms