RNA–Protein interactions for RNA: ENST00000404484.8

TPM1-208, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 1,568 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-208ENST00000404484 SGK2Q9HBY8 427 aa20.58■□□□□ 0.88
TPM1-208ENST00000404484 APOBEC2Q9Y235 224 aaKnown RBP20.58■□□□□ 0.88
TPM1-208ENST00000404484 EML5Q05BV3 1969 aa20.57■□□□□ 0.88
TPM1-208ENST00000404484 C17orf113A0A1B0GUU1 675 aa20.57■□□□□ 0.88
TPM1-208ENST00000404484 PAK4O96013 591 aaPredicted RBP20.57■□□□□ 0.88
TPM1-208ENST00000404484 RPS17P08708 135 aaKnown RBP20.57■□□□□ 0.88
TPM1-208ENST00000404484 TRIM23P36406 574 aa20.57■□□□□ 0.88
TPM1-208ENST00000404484 HK3P52790 923 aa20.57■□□□□ 0.88
TPM1-208ENST00000404484 USP39Q53GS9 565 aaKnown RBP20.57■□□□□ 0.88
TPM1-208ENST00000404484 SULT1C3Q6IMI6 304 aa20.57■□□□□ 0.88
TPM1-208ENST00000404484 METTL2BQ6P1Q9 378 aaKnown RBP20.57■□□□□ 0.88
TPM1-208ENST00000404484 DENND6BQ8NEG7 585 aa20.57■□□□□ 0.88
TPM1-208ENST00000404484 OR2T34Q8NGX1 318 aa20.57■□□□□ 0.88
TPM1-208ENST00000404484 STON2Q8WXE9 905 aa20.57■□□□□ 0.88
TPM1-208ENST00000404484 RLN3Q8WXF3 142 aa20.57■□□□□ 0.88
TPM1-208ENST00000404484 BTBD1Q9H0C5 482 aa20.57■□□□□ 0.88
TPM1-208ENST00000404484 UTP6Q9NYH9 597 aaKnown RBP20.57■□□□□ 0.88
TPM1-208ENST00000404484 SPAG17Q6Q759 2223 aa20.57■□□□□ 0.88
TPM1-208ENST00000404484 KLHL33A6NCF5 533 aa20.56■□□□□ 0.88
TPM1-208ENST00000404484 NCF1BA6NI72 391 aaPredicted RBP20.56■□□□□ 0.88
TPM1-208ENST00000404484 NCF1CA8MVU1 366 aaPredicted RBP20.56■□□□□ 0.88
TPM1-208ENST00000404484 HDAC3O15379 428 aa20.56■□□□□ 0.88
TPM1-208ENST00000404484 MLYCDO95822 493 aa20.56■□□□□ 0.88
TPM1-208ENST00000404484 NCF1P14598 390 aaPredicted RBP20.56■□□□□ 0.88
TPM1-208ENST00000404484 CYP2A7P20853 494 aa20.56■□□□□ 0.88
TPM1-208ENST00000404484 TPMTP51580 245 aa20.56■□□□□ 0.88
TPM1-208ENST00000404484 CDKL1Q00532 357 aa20.56■□□□□ 0.88
TPM1-208ENST00000404484 FGL2Q14314 439 aa20.56■□□□□ 0.88
TPM1-208ENST00000404484 ATG14Q6ZNE5 492 aa20.56■□□□□ 0.88
TPM1-208ENST00000404484 UBE2R2Q712K3 238 aaPredicted RBP20.56■□□□□ 0.88
TPM1-208ENST00000404484 CUZD1Q86UP6 607 aa20.56■□□□□ 0.88
TPM1-208ENST00000404484 TRIM69Q86WT6 500 aa20.56■□□□□ 0.88
TPM1-208ENST00000404484 TCAIMQ8N3R3 496 aa20.56■□□□□ 0.88
TPM1-208ENST00000404484 FRMD1Q8N878 549 aa20.56■□□□□ 0.88
TPM1-208ENST00000404484 SLC12A9Q9BXP2 914 aa20.56■□□□□ 0.88
TPM1-208ENST00000404484 COG4Q9H9E3 785 aa20.56■□□□□ 0.88
TPM1-208ENST00000404484 PARVBQ9HBI1 364 aa20.56■□□□□ 0.88
TPM1-208ENST00000404484 CDYLQ9Y232 598 aa20.56■□□□□ 0.88
TPM1-208ENST00000404484 STK38LQ9Y2H1 464 aa20.56■□□□□ 0.88
TPM1-208ENST00000404484 ZNF292O60281 2723 aa20.56■□□□□ 0.88
TPM1-208ENST00000404484 SLC5A10A0PJK1 596 aa20.55■□□□□ 0.88
TPM1-208ENST00000404484 MATN2O00339 956 aa20.55■□□□□ 0.88
TPM1-208ENST00000404484 SIX3O95343 332 aaPredicted RBP20.55■□□□□ 0.88
TPM1-208ENST00000404484 HIST1H2AGP0C0S8 130 aaPredicted RBP20.55■□□□□ 0.88
TPM1-208ENST00000404484 ZNF8P17098 575 aaPredicted RBP20.55■□□□□ 0.88
TPM1-208ENST00000404484 HIST1H2ADP20671 130 aa20.55■□□□□ 0.88
TPM1-208ENST00000404484 LCP2Q13094 533 aa20.55■□□□□ 0.88
TPM1-208ENST00000404484 INPP5AQ14642 412 aa20.55■□□□□ 0.88
TPM1-208ENST00000404484 PCBP2Q15366 365 aaKnown RBP eCLIP20.55■□□□□ 0.88
TPM1-208ENST00000404484 SH2D4BQ5SQS7 431 aa20.55■□□□□ 0.88
TPM1-208ENST00000404484 TTC23LQ6PF05 361 aa20.55■□□□□ 0.88
TPM1-208ENST00000404484 FAM124AQ86V42 546 aa20.55■□□□□ 0.88
TPM1-208ENST00000404484 HM13Q8TCT9 377 aa20.55■□□□□ 0.88
TPM1-208ENST00000404484 ASB11Q8WXH4 323 aa20.55■□□□□ 0.88
TPM1-208ENST00000404484 CCT6BQ92526 530 aa20.55■□□□□ 0.88
TPM1-208ENST00000404484 HIST1H2AHQ96KK5 128 aa20.55■□□□□ 0.88
TPM1-208ENST00000404484 FOPNLQ96NB1 174 aa20.55■□□□□ 0.88
TPM1-208ENST00000404484 HIST1H2AJQ99878 128 aa20.55■□□□□ 0.88
TPM1-208ENST00000404484 EGFL8Q99944 293 aa20.55■□□□□ 0.88
TPM1-208ENST00000404484 H2AFJQ9BTM1 129 aa20.55■□□□□ 0.88
TPM1-208ENST00000404484 ITM2CQ9NQX7 267 aa20.55■□□□□ 0.88
TPM1-208ENST00000404484 ACSS2Q9NR19 701 aa20.55■□□□□ 0.88
TPM1-208ENST00000404484 MBNL1Q9NR56 388 aaKnown RBP20.55■□□□□ 0.88
TPM1-208ENST00000404484 ABCF3Q9NUQ8 709 aa20.55■□□□□ 0.88
TPM1-208ENST00000404484 USP36Q9P275 1121 aaKnown RBP20.55■□□□□ 0.88
TPM1-208ENST00000404484 HEY2Q9UBP5 337 aa20.55■□□□□ 0.88
TPM1-208ENST00000404484 ZDHHC2Q9UIJ5 367 aa20.55■□□□□ 0.88
TPM1-208ENST00000404484 ADAMTS6Q9UKP5 1117 aa20.55■□□□□ 0.88
TPM1-208ENST00000404484 RAB23Q9ULC3 237 aa20.55■□□□□ 0.88
TPM1-208ENST00000404484 DNMT3AQ9Y6K1 912 aaPredicted RBP20.55■□□□□ 0.88
TPM1-208ENST00000404484 IGLV3-19P01714 112 aa20.55■□□□□ 0.88
TPM1-208ENST00000404484 ANXA5P08758 320 aa20.55■□□□□ 0.88
TPM1-208ENST00000404484 MYCLP1P12525 358 aaPredicted RBP20.55■□□□□ 0.88
TPM1-208ENST00000404484 PBLDP30039 288 aaPredicted RBP20.55■□□□□ 0.88
TPM1-208ENST00000404484 CCR10P46092 362 aa20.55■□□□□ 0.88
TPM1-208ENST00000404484 AP1S2P56377 157 aa20.55■□□□□ 0.88
TPM1-208ENST00000404484 CLCQ05315 142 aa20.55■□□□□ 0.88
TPM1-208ENST00000404484 SPDYAQ5MJ70 313 aa20.55■□□□□ 0.88
TPM1-208ENST00000404484 SLC22A15Q8IZD6 547 aa20.55■□□□□ 0.88
TPM1-208ENST00000404484 FAM160A2Q8N612 972 aaPredicted RBP20.55■□□□□ 0.88
TPM1-208ENST00000404484 ZNF483Q8TF39 744 aaPredicted RBP20.55■□□□□ 0.88
TPM1-208ENST00000404484 UBTD2Q8WUN7 234 aa20.55■□□□□ 0.88
TPM1-208ENST00000404484 KLK6Q92876 244 aa20.55■□□□□ 0.88
TPM1-208ENST00000404484 MOCOSQ96EN8 888 aa20.55■□□□□ 0.88
TPM1-208ENST00000404484 RILPQ96NA2 401 aa20.55■□□□□ 0.88
TPM1-208ENST00000404484 TRPC5OSA6NMA1 111 aa20.54■□□□□ 0.88
TPM1-208ENST00000404484 GFYI3L273 518 aa20.54■□□□□ 0.88
TPM1-208ENST00000404484 GIPC1O14908 333 aa20.54■□□□□ 0.88
TPM1-208ENST00000404484 CHUKO15111 745 aa20.54■□□□□ 0.88
TPM1-208ENST00000404484 HNRNPH2P55795 449 aaKnown RBP20.54■□□□□ 0.88
TPM1-208ENST00000404484 PLK5Q496M5 336 aa20.54■□□□□ 0.88
TPM1-208ENST00000404484 LRRTM4Q86VH4 590 aa20.54■□□□□ 0.88
TPM1-208ENST00000404484 VRK3Q8IV63 474 aa20.54■□□□□ 0.88
TPM1-208ENST00000404484 OR2L2Q8NH16 312 aa20.54■□□□□ 0.88
TPM1-208ENST00000404484 AGR3Q8TD06 166 aa20.54■□□□□ 0.88
TPM1-208ENST00000404484 MCOLN3Q8TDD5 553 aa20.54■□□□□ 0.88
TPM1-208ENST00000404484 ZC3H10Q96K80 434 aaKnown RBP20.54■□□□□ 0.88
TPM1-208ENST00000404484 DUSP15Q9H1R2 295 aaPredicted RBP20.54■□□□□ 0.88
TPM1-208ENST00000404484 RMI1Q9H9A7 625 aa20.54■□□□□ 0.88
TPM1-208ENST00000404484 WWOXQ9NZC7 414 aa20.54■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms