RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 PCDHGA1Q9Y5H4 931 aa9.03□□□□□ -0.96
VPS53-203ENST00000401468 PCYT1BQ9Y5K3 369 aaPredicted RBP9.03□□□□□ -0.96
VPS53-203ENST00000401468 DNMT3AQ9Y6K1 912 aaPredicted RBP9.03□□□□□ -0.96
VPS53-203ENST00000401468 CXorf49A8MYA2 514 aaPredicted RBP9.02□□□□□ -0.97
VPS53-203ENST00000401468 GOLGA8KD6RF30 607 aa9.02□□□□□ -0.97
VPS53-203ENST00000401468 GOLGA8TH3BQL2 631 aa9.02□□□□□ -0.97
VPS53-203ENST00000401468 QSOX1O00391 747 aa9.02□□□□□ -0.97
VPS53-203ENST00000401468 PRMT5O14744 637 aaPredicted RBP9.02□□□□□ -0.97
VPS53-203ENST00000401468 INPP4BO15327 924 aa9.02□□□□□ -0.97
VPS53-203ENST00000401468 YY2O15391 372 aa9.02□□□□□ -0.97
VPS53-203ENST00000401468 RASGRP1O95267 797 aa9.02□□□□□ -0.97
VPS53-203ENST00000401468 AHSGP02765 367 aa9.02□□□□□ -0.97
VPS53-203ENST00000401468 NUDT17P0C025 328 aa9.02□□□□□ -0.97
VPS53-203ENST00000401468 HGFP14210 728 aa9.02□□□□□ -0.97
VPS53-203ENST00000401468 ATP1B2P14415 290 aaPredicted RBP9.02□□□□□ -0.97
VPS53-203ENST00000401468 ZNF8P17098 575 aaPredicted RBP9.02□□□□□ -0.97
VPS53-203ENST00000401468 PHBP35232 272 aa9.02□□□□□ -0.97
VPS53-203ENST00000401468 PRLHRP49683 370 aa9.02□□□□□ -0.97
VPS53-203ENST00000401468 CSRP3P50461 194 aa9.02□□□□□ -0.97
VPS53-203ENST00000401468 HK3P52790 923 aa9.02□□□□□ -0.97
VPS53-203ENST00000401468 SRP54P61011 504 aaKnown RBP9.02□□□□□ -0.97
VPS53-203ENST00000401468 HNRNPKP61978 463 aaKnown RBP eCLIP9.02□□□□□ -0.97
VPS53-203ENST00000401468 PPARDQ03181 441 aa9.02□□□□□ -0.97
VPS53-203ENST00000401468 DMPKQ09013 629 aa9.02□□□□□ -0.97
VPS53-203ENST00000401468 THOC5Q13769 683 aaKnown RBP9.02□□□□□ -0.97
VPS53-203ENST00000401468 ZNF789Q5FWF6 425 aa9.02□□□□□ -0.97
VPS53-203ENST00000401468 DOK6Q6PKX4 331 aa9.02□□□□□ -0.97
VPS53-203ENST00000401468 B3GNT8Q7Z7M8 397 aa9.02□□□□□ -0.97
VPS53-203ENST00000401468 SDCCAG8Q86SQ7 713 aaPredicted RBP9.02□□□□□ -0.97
VPS53-203ENST00000401468 TRIM74Q86UV6 250 aa9.02□□□□□ -0.97
VPS53-203ENST00000401468 CNPY4Q8N129 248 aa9.02□□□□□ -0.97
VPS53-203ENST00000401468 SDR16C5Q8N3Y7 309 aa9.02□□□□□ -0.97
VPS53-203ENST00000401468 Q8N9G6 341 aaPredicted RBP9.02□□□□□ -0.97
VPS53-203ENST00000401468 GPBAR1Q8TDU6 330 aa9.02□□□□□ -0.97
VPS53-203ENST00000401468 FBF1Q8TES7 1133 aa9.02□□□□□ -0.97
VPS53-203ENST00000401468 OR1E3Q8WZA6 343 aa9.02□□□□□ -0.97
VPS53-203ENST00000401468 CYTH2Q99418 400 aa9.02□□□□□ -0.97
VPS53-203ENST00000401468 TTC1Q99614 292 aa9.02□□□□□ -0.97
VPS53-203ENST00000401468 TIMM29Q9BSF4 260 aa9.02□□□□□ -0.97
VPS53-203ENST00000401468 SLC13A1Q9BZW2 595 aa9.02□□□□□ -0.97
VPS53-203ENST00000401468 FAM96AQ9H5X1 160 aa9.02□□□□□ -0.97
VPS53-203ENST00000401468 CPNE5Q9HCH3 593 aa9.02□□□□□ -0.97
VPS53-203ENST00000401468 IARS2Q9NSE4 1012 aaKnown RBP9.02□□□□□ -0.97
VPS53-203ENST00000401468 TRNAU1APQ9NX07 287 aaKnown RBP9.02□□□□□ -0.97
VPS53-203ENST00000401468 KLQ9UEF7 1012 aa9.02□□□□□ -0.97
VPS53-203ENST00000401468 ATXN7L1Q9ULK2 861 aaPredicted RBP9.02□□□□□ -0.97
VPS53-203ENST00000401468 PLEKHM1Q9Y4G2 1056 aa9.02□□□□□ -0.97
VPS53-203ENST00000401468 ST14Q9Y5Y6 855 aa9.02□□□□□ -0.97
VPS53-203ENST00000401468 PSAT1Q9Y617 370 aa9.02□□□□□ -0.97
VPS53-203ENST00000401468 COMMD10Q9Y6G5 202 aa9.02□□□□□ -0.97
VPS53-203ENST00000401468 SNRNP200O75643 2136 aaKnown RBP9.01□□□□□ -0.97
VPS53-203ENST00000401468 AHCTF1Q8WYP5 2266 aa9.01□□□□□ -0.97
VPS53-203ENST00000401468 A0A087WUV0 522 aaPredicted RBP9.01□□□□□ -0.97
VPS53-203ENST00000401468 C17orf113A0A1B0GUU1 675 aa9.01□□□□□ -0.97
VPS53-203ENST00000401468 B4DGG1 531 aa9.01□□□□□ -0.97
VPS53-203ENST00000401468 PFDN6O15212 129 aa9.01□□□□□ -0.97
VPS53-203ENST00000401468 KMOO15229 486 aa9.01□□□□□ -0.97
VPS53-203ENST00000401468 GRID2O43424 1007 aa9.01□□□□□ -0.97
VPS53-203ENST00000401468 OR1I1O60431 355 aa9.01□□□□□ -0.97
VPS53-203ENST00000401468 KCNJ13O60928 360 aa9.01□□□□□ -0.97
VPS53-203ENST00000401468 MTX2O75431 263 aa9.01□□□□□ -0.97
VPS53-203ENST00000401468 TCEA3O75764 348 aa9.01□□□□□ -0.97
VPS53-203ENST00000401468 CDK14O94921 469 aa9.01□□□□□ -0.97
VPS53-203ENST00000401468 HAUS5O94927 633 aa9.01□□□□□ -0.97
VPS53-203ENST00000401468 ESR1P03372 595 aa9.01□□□□□ -0.97
VPS53-203ENST00000401468 ANXA6P08133 673 aa9.01□□□□□ -0.97
VPS53-203ENST00000401468 ALPPL2P10696 532 aa9.01□□□□□ -0.97
VPS53-203ENST00000401468 RALBP11234 206 aa9.01□□□□□ -0.97
VPS53-203ENST00000401468 CTSEP14091 401 aa9.01□□□□□ -0.97
VPS53-203ENST00000401468 H2AFXP16104 143 aaPredicted RBP9.01□□□□□ -0.97
VPS53-203ENST00000401468 ZNF7P17097 686 aaPredicted RBP9.01□□□□□ -0.97
VPS53-203ENST00000401468 GCAP28676 217 aa9.01□□□□□ -0.97
VPS53-203ENST00000401468 HSD17B3P37058 310 aa9.01□□□□□ -0.97
VPS53-203ENST00000401468 ABCG1P45844 678 aa9.01□□□□□ -0.97
VPS53-203ENST00000401468 POLD2P49005 469 aa9.01□□□□□ -0.97
VPS53-203ENST00000401468 BLKP51451 505 aa9.01□□□□□ -0.97
VPS53-203ENST00000401468 CTSCP53634 463 aa9.01□□□□□ -0.97
VPS53-203ENST00000401468 CSE1LP55060 971 aaKnown RBP9.01□□□□□ -0.97
VPS53-203ENST00000401468 TIAL1Q01085 375 aaKnown RBP eCLIP9.01□□□□□ -0.97
VPS53-203ENST00000401468 SRSF6Q13247 344 aaKnown RBP9.01□□□□□ -0.97
VPS53-203ENST00000401468 CTBP1Q13363 440 aa9.01□□□□□ -0.97
VPS53-203ENST00000401468 LRP8Q14114 963 aa9.01□□□□□ -0.97
VPS53-203ENST00000401468 SLC29A2Q14542 456 aa9.01□□□□□ -0.97
VPS53-203ENST00000401468 GBX1Q14549 363 aa9.01□□□□□ -0.97
VPS53-203ENST00000401468 RASA2Q15283 850 aa9.01□□□□□ -0.97
VPS53-203ENST00000401468 NR0B2Q15466 257 aa9.01□□□□□ -0.97
VPS53-203ENST00000401468 KBTBD12Q3ZCT8 623 aa9.01□□□□□ -0.97
VPS53-203ENST00000401468 MAP9Q49MG5 647 aa9.01□□□□□ -0.97
VPS53-203ENST00000401468 CTSL3PQ5NE16 218 aa9.01□□□□□ -0.97
VPS53-203ENST00000401468 ZNF648Q5T619 568 aaPredicted RBP9.01□□□□□ -0.97
VPS53-203ENST00000401468 CDCP2Q5VXM1 449 aa9.01□□□□□ -0.97
VPS53-203ENST00000401468 TMEM214Q6NUQ4 689 aaKnown RBP9.01□□□□□ -0.97
VPS53-203ENST00000401468 ZCCHC8Q6NZY4 707 aaKnown RBP9.01□□□□□ -0.97
VPS53-203ENST00000401468 ZNF549Q6P9A3 640 aa9.01□□□□□ -0.97
VPS53-203ENST00000401468 LDB1Q86U70 411 aaPredicted RBP9.01□□□□□ -0.97
VPS53-203ENST00000401468 LRRTM4Q86VH4 590 aa9.01□□□□□ -0.97
VPS53-203ENST00000401468 ZC3HC1Q86WB0 502 aaKnown RBP9.01□□□□□ -0.97
VPS53-203ENST00000401468 DCBLD1Q8N8Z6 715 aa9.01□□□□□ -0.97
VPS53-203ENST00000401468 SLC44A1Q8WWI5 657 aa9.01□□□□□ -0.97
VPS53-203ENST00000401468 CDKL2Q92772 493 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms