RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 GMIPQ9P107 970 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 ALG5Q9Y673 324 aa10.12□□□□□ -0.79
LIMCH1-203ENST00000396595 GRM6O15303 877 aa10.11□□□□□ -0.79
LIMCH1-203ENST00000396595 B3GALNT1O75752 331 aa10.11□□□□□ -0.79
LIMCH1-203ENST00000396595 CDH4P55283 916 aa10.11□□□□□ -0.79
LIMCH1-203ENST00000396595 RAB5BP61020 215 aa10.11□□□□□ -0.79
LIMCH1-203ENST00000396595 E2F2Q14209 437 aa10.11□□□□□ -0.79
LIMCH1-203ENST00000396595 TRMT10BQ6PF06 316 aaKnown RBP10.11□□□□□ -0.79
LIMCH1-203ENST00000396595 GPR142Q7Z601 462 aa10.11□□□□□ -0.79
LIMCH1-203ENST00000396595 OR6K2Q8NGY2 324 aa10.11□□□□□ -0.79
LIMCH1-203ENST00000396595 SLC35B2Q8TB61 432 aa10.11□□□□□ -0.79
LIMCH1-203ENST00000396595 ING5Q8WYH8 240 aa10.11□□□□□ -0.79
LIMCH1-203ENST00000396595 TOP1MTQ969P6 601 aa10.11□□□□□ -0.79
LIMCH1-203ENST00000396595 SSX3Q99909 188 aa10.11□□□□□ -0.79
LIMCH1-203ENST00000396595 FEM1AQ9BSK4 669 aa10.11□□□□□ -0.79
LIMCH1-203ENST00000396595 C1orf109Q9NX04 203 aa10.11□□□□□ -0.79
LIMCH1-203ENST00000396595 FZD1Q9UP38 647 aa10.11□□□□□ -0.79
LIMCH1-203ENST00000396595 BCL9LQ86UU0 1499 aa10.11□□□□□ -0.79
LIMCH1-203ENST00000396595 C9JVG2 144 aa10.11□□□□□ -0.79
LIMCH1-203ENST00000396595 SCN2BO60939 215 aa10.11□□□□□ -0.79
LIMCH1-203ENST00000396595 TBX10O75333 385 aa10.11□□□□□ -0.79
LIMCH1-203ENST00000396595 OR7A10O76100 309 aa10.11□□□□□ -0.79
LIMCH1-203ENST00000396595 TMEM63AO94886 807 aa10.11□□□□□ -0.79
LIMCH1-203ENST00000396595 SAGP10523 405 aaPredicted RBP10.11□□□□□ -0.79
LIMCH1-203ENST00000396595 AZGP1P25311 298 aaKnown RBP10.11□□□□□ -0.79
LIMCH1-203ENST00000396595 SRSF11Q05519 484 aaKnown RBP10.11□□□□□ -0.79
LIMCH1-203ENST00000396595 PRAMEF19Q5SWL8 479 aa10.11□□□□□ -0.79
LIMCH1-203ENST00000396595 MED27Q6P2C8 311 aa10.11□□□□□ -0.79
LIMCH1-203ENST00000396595 LIX1Q8N485 282 aa10.11□□□□□ -0.79
LIMCH1-203ENST00000396595 MAB21L3Q8N8X9 362 aa10.11□□□□□ -0.79
LIMCH1-203ENST00000396595 FAM234BA2RU67 622 aa10.11□□□□□ -0.79
LIMCH1-203ENST00000396595 RIIAD1A6NNX1 92 aa10.11□□□□□ -0.79
LIMCH1-203ENST00000396595 MAGEB17A8MXT2 336 aa10.11□□□□□ -0.79
LIMCH1-203ENST00000396595 CDK14O94921 469 aa10.11□□□□□ -0.79
LIMCH1-203ENST00000396595 PPM1AP35813 382 aa10.11□□□□□ -0.79
LIMCH1-203ENST00000396595 RGS6P49758 472 aa10.11□□□□□ -0.79
LIMCH1-203ENST00000396595 CDH12P55289 794 aa10.11□□□□□ -0.79
LIMCH1-203ENST00000396595 EEFSECP57772 596 aaKnown RBP10.11□□□□□ -0.79
LIMCH1-203ENST00000396595 PPP2R2BQ00005 443 aa10.11□□□□□ -0.79
LIMCH1-203ENST00000396595 DPY19L1Q2PZI1 675 aa10.11□□□□□ -0.79
LIMCH1-203ENST00000396595 HSDL1Q3SXM5 330 aa10.11□□□□□ -0.79
LIMCH1-203ENST00000396595 DUSP28Q4G0W2 176 aa10.11□□□□□ -0.79
LIMCH1-203ENST00000396595 SPERTQ8NA61 448 aa10.11□□□□□ -0.79
LIMCH1-203ENST00000396595 SLC43A3Q8NBI5 491 aa10.11□□□□□ -0.79
LIMCH1-203ENST00000396595 OR10H5Q8NGA6 315 aa10.11□□□□□ -0.79
LIMCH1-203ENST00000396595 TTPALQ9BTX7 342 aa10.11□□□□□ -0.79
LIMCH1-203ENST00000396595 GOLGA2P5Q9HBQ8 144 aa10.11□□□□□ -0.79
LIMCH1-203ENST00000396595 IL1RAPQ9NPH3 570 aa10.11□□□□□ -0.79
LIMCH1-203ENST00000396595 TAS2R7Q9NYW3 318 aa10.11□□□□□ -0.79
LIMCH1-203ENST00000396595 MRTO4Q9UKD2 239 aaKnown RBP10.11□□□□□ -0.79
LIMCH1-203ENST00000396595 IKZF2Q9UKS7 526 aa10.11□□□□□ -0.79
LIMCH1-203ENST00000396595 IGLV3-22A0A075B6J6 115 aa10.11□□□□□ -0.79
LIMCH1-203ENST00000396595 CACNB4O00305 520 aaPredicted RBP10.11□□□□□ -0.79
LIMCH1-203ENST00000396595 PRAMEF1O95521 474 aa10.11□□□□□ -0.79
LIMCH1-203ENST00000396595 GOT2P00505 430 aaKnown RBP10.11□□□□□ -0.79
LIMCH1-203ENST00000396595 PRH1P02810 166 aa10.11□□□□□ -0.79
LIMCH1-203ENST00000396595 PTGER3P43115 390 aa10.11□□□□□ -0.79
LIMCH1-203ENST00000396595 CCR10P46092 362 aa10.11□□□□□ -0.79
LIMCH1-203ENST00000396595 GDF10P55107 478 aa10.11□□□□□ -0.79
LIMCH1-203ENST00000396595 GNA12Q03113 381 aa10.11□□□□□ -0.79
LIMCH1-203ENST00000396595 MERTKQ12866 999 aa10.11□□□□□ -0.79
LIMCH1-203ENST00000396595 SEMA3AQ14563 771 aa10.11□□□□□ -0.79
LIMCH1-203ENST00000396595 USP43Q70EL4 1123 aa10.11□□□□□ -0.79
LIMCH1-203ENST00000396595 DEFB132Q7Z7B7 95 aa10.11□□□□□ -0.79
LIMCH1-203ENST00000396595 TMC8Q8IU68 726 aa10.11□□□□□ -0.79
LIMCH1-203ENST00000396595 ERI1Q8IV48 349 aaKnown RBP10.11□□□□□ -0.79
LIMCH1-203ENST00000396595 GFM1Q96RP9 751 aaKnown RBP10.11□□□□□ -0.79
LIMCH1-203ENST00000396595 EBF4Q9BQW3 602 aa10.11□□□□□ -0.79
LIMCH1-203ENST00000396595 RDH8Q9NYR8 311 aa10.11□□□□□ -0.79
LIMCH1-203ENST00000396595 CALML5Q9NZT1 146 aa10.11□□□□□ -0.79
LIMCH1-203ENST00000396595 EIF2B4Q9UI10 523 aaKnown RBP10.11□□□□□ -0.79
LIMCH1-203ENST00000396595 GABRDO14764 452 aa10.1□□□□□ -0.79
LIMCH1-203ENST00000396595 MAGEB3O15480 346 aa10.1□□□□□ -0.79
LIMCH1-203ENST00000396595 SLURP2P0DP57 97 aa10.1□□□□□ -0.79
LIMCH1-203ENST00000396595 KELP23276 732 aa10.1□□□□□ -0.79
LIMCH1-203ENST00000396595 ALDH4A1P30038 563 aa10.1□□□□□ -0.79
LIMCH1-203ENST00000396595 INHBEP58166 350 aa10.1□□□□□ -0.79
LIMCH1-203ENST00000396595 CHIT1Q13231 466 aa10.1□□□□□ -0.79
LIMCH1-203ENST00000396595 RAPSNQ13702 412 aa10.1□□□□□ -0.79
LIMCH1-203ENST00000396595 DAG1Q14118 895 aa10.1□□□□□ -0.79
LIMCH1-203ENST00000396595 ZNF433Q8N7K0 673 aaPredicted RBP10.1□□□□□ -0.79
LIMCH1-203ENST00000396595 DCBLD1Q8N8Z6 715 aa10.1□□□□□ -0.79
LIMCH1-203ENST00000396595 OR52J3Q8NH60 311 aa10.1□□□□□ -0.79
LIMCH1-203ENST00000396595 PIGXQ8TBF5 258 aa10.1□□□□□ -0.79
LIMCH1-203ENST00000396595 NDRG1Q92597 394 aaKnown RBP10.1□□□□□ -0.79
LIMCH1-203ENST00000396595 C8orf48Q96LL4 319 aa10.1□□□□□ -0.79
LIMCH1-203ENST00000396595 APOBEC3GQ9HC16 384 aaKnown RBP10.1□□□□□ -0.79
LIMCH1-203ENST00000396595 DTLQ9NZJ0 730 aa10.1□□□□□ -0.79
LIMCH1-203ENST00000396595 MTRRQ9UBK8 725 aa10.1□□□□□ -0.79
LIMCH1-203ENST00000396595 MAP4K5Q9Y4K4 846 aa10.1□□□□□ -0.79
LIMCH1-203ENST00000396595 PCDHAC2Q9Y5I4 1007 aa10.1□□□□□ -0.79
LIMCH1-203ENST00000396595 MUSKO15146 869 aa10.1□□□□□ -0.79
LIMCH1-203ENST00000396595 SLC22A1O15245 554 aa10.1□□□□□ -0.79
LIMCH1-203ENST00000396595 NUDT7P0C024 238 aa10.1□□□□□ -0.79
LIMCH1-203ENST00000396595 RPS14P62263 151 aaKnown RBP10.1□□□□□ -0.79
LIMCH1-203ENST00000396595 TMEM44Q2T9K0 475 aa10.1□□□□□ -0.79
LIMCH1-203ENST00000396595 DDX59Q5T1V6 619 aaKnown RBP eCLIP10.1□□□□□ -0.79
LIMCH1-203ENST00000396595 OGFRL1Q5TC84 451 aaPredicted RBP10.1□□□□□ -0.79
LIMCH1-203ENST00000396595 HDDC3Q8N4P3 179 aa10.1□□□□□ -0.79
LIMCH1-203ENST00000396595 NAT8LQ8N9F0 302 aa10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms