RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 ZXDBP98169 803 aa10.96□□□□□ -0.66
CUX1-204ENST00000393824 EPS8Q12929 822 aa10.96□□□□□ -0.66
CUX1-204ENST00000393824 SLC13A2Q13183 592 aa10.96□□□□□ -0.66
CUX1-204ENST00000393824 SUZ12Q15022 739 aaKnown RBP10.96□□□□□ -0.66
CUX1-204ENST00000393824 VPS26BQ4G0F5 336 aa10.96□□□□□ -0.66
CUX1-204ENST00000393824 PYCR3Q53H96 274 aa10.96□□□□□ -0.66
CUX1-204ENST00000393824 PCID2Q5JVF3 399 aa10.96□□□□□ -0.66
CUX1-204ENST00000393824 OTUD3Q5T2D3 398 aaPredicted RBP10.96□□□□□ -0.66
CUX1-204ENST00000393824 PRSS48Q7RTY5 328 aa10.96□□□□□ -0.66
CUX1-204ENST00000393824 MIB1Q86YT6 1006 aa10.96□□□□□ -0.66
CUX1-204ENST00000393824 TDHQ8IZJ6 230 aa10.96□□□□□ -0.66
CUX1-204ENST00000393824 KREMEN2Q8NCW0 462 aa10.96□□□□□ -0.66
CUX1-204ENST00000393824 VN1R2Q8NFZ6 395 aa10.96□□□□□ -0.66
CUX1-204ENST00000393824 SUN5Q8TC36 379 aa10.96□□□□□ -0.66
CUX1-204ENST00000393824 HEXDCQ8WVB3 486 aa10.96□□□□□ -0.66
CUX1-204ENST00000393824 SNX18Q96RF0 628 aa10.96□□□□□ -0.66
CUX1-204ENST00000393824 NODALQ96S42 347 aa10.96□□□□□ -0.66
CUX1-204ENST00000393824 FEM1AQ9BSK4 669 aa10.96□□□□□ -0.66
CUX1-204ENST00000393824 TRMOQ9BU70 441 aa10.96□□□□□ -0.66
CUX1-204ENST00000393824 TTLL2Q9BWV7 592 aa10.96□□□□□ -0.66
CUX1-204ENST00000393824 EMILIN2Q9BXX0 1053 aa10.96□□□□□ -0.66
CUX1-204ENST00000393824 RNF38Q9H0F5 515 aa10.96□□□□□ -0.66
CUX1-204ENST00000393824 FBXO44Q9H4M3 255 aa10.96□□□□□ -0.66
CUX1-204ENST00000393824 ALG2Q9H553 416 aa10.96□□□□□ -0.66
CUX1-204ENST00000393824 IL21Q9HBE4 155 aa10.96□□□□□ -0.66
CUX1-204ENST00000393824 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP10.96□□□□□ -0.66
CUX1-204ENST00000393824 PCDHGA3Q9Y5H0 932 aa10.96□□□□□ -0.66
CUX1-204ENST00000393824 MN1Q10571 1320 aaPredicted RBP10.95□□□□□ -0.66
CUX1-204ENST00000393824 ZNF840PA6NDX5 716 aa10.95□□□□□ -0.66
CUX1-204ENST00000393824 SAGE2PA6NJ88 616 aa10.95□□□□□ -0.66
CUX1-204ENST00000393824 KCNK1O00180 336 aa10.95□□□□□ -0.66
CUX1-204ENST00000393824 CCL16O15467 120 aa10.95□□□□□ -0.66
CUX1-204ENST00000393824 CACNG3O60359 315 aa10.95□□□□□ -0.66
CUX1-204ENST00000393824 ALX3O95076 343 aa10.95□□□□□ -0.66
CUX1-204ENST00000393824 ADH1AP07327 375 aa10.95□□□□□ -0.66
CUX1-204ENST00000393824 CDH1P12830 882 aa10.95□□□□□ -0.66
CUX1-204ENST00000393824 COPZ1P61923 177 aa10.95□□□□□ -0.66
CUX1-204ENST00000393824 EFEMP1Q12805 493 aa10.95□□□□□ -0.66
CUX1-204ENST00000393824 SEMA3BQ13214 749 aa10.95□□□□□ -0.66
CUX1-204ENST00000393824 CAPRIN1Q14444 709 aaKnown RBP10.95□□□□□ -0.66
CUX1-204ENST00000393824 ZNF460Q14592 562 aa10.95□□□□□ -0.66
CUX1-204ENST00000393824 ACOX1Q15067 660 aa10.95□□□□□ -0.66
CUX1-204ENST00000393824 MAPK11Q15759 364 aa10.95□□□□□ -0.66
CUX1-204ENST00000393824 FAM83EQ2M2I3 478 aa10.95□□□□□ -0.66
CUX1-204ENST00000393824 ZNF181Q2M3W8 571 aa10.95□□□□□ -0.66
CUX1-204ENST00000393824 DDX59Q5T1V6 619 aaKnown RBP eCLIP10.95□□□□□ -0.668e-7■■■■■ 33
CUX1-204ENST00000393824 PKN3Q6P5Z2 889 aa10.95□□□□□ -0.66
CUX1-204ENST00000393824 TUBA3EQ6PEY2 450 aa10.95□□□□□ -0.66
CUX1-204ENST00000393824 PRR23CQ6ZRP0 262 aa10.95□□□□□ -0.66
CUX1-204ENST00000393824 RFPL4BQ6ZWI9 263 aa10.95□□□□□ -0.66
CUX1-204ENST00000393824 GAREM2Q75VX8 874 aa10.95□□□□□ -0.66
CUX1-204ENST00000393824 ADCK1Q86TW2 530 aa10.95□□□□□ -0.66
CUX1-204ENST00000393824 NDNFQ8TB73 568 aa10.95□□□□□ -0.66
CUX1-204ENST00000393824 TSPEARQ8WU66 669 aa10.95□□□□□ -0.66
CUX1-204ENST00000393824 ATL1Q8WXF7 558 aa10.95□□□□□ -0.66
CUX1-204ENST00000393824 WBP2Q969T9 261 aa10.95□□□□□ -0.66
CUX1-204ENST00000393824 TEKT5Q96M29 485 aa10.95□□□□□ -0.66
CUX1-204ENST00000393824 IRF2BPLQ9H1B7 796 aa10.95□□□□□ -0.66
CUX1-204ENST00000393824 DSN1Q9H410 356 aa10.95□□□□□ -0.66
CUX1-204ENST00000393824 SLC52A3Q9NQ40 469 aa10.95□□□□□ -0.66
CUX1-204ENST00000393824 ABCC13Q9NSE7 274 aa10.95□□□□□ -0.66
CUX1-204ENST00000393824 FAM118AQ9NWS6 357 aa10.95□□□□□ -0.66
CUX1-204ENST00000393824 EIF3LQ9Y262 564 aaKnown RBP10.95□□□□□ -0.66
CUX1-204ENST00000393824 PCDHB3Q9Y5E6 796 aa10.95□□□□□ -0.66
CUX1-204ENST00000393824 HCFC2Q9Y5Z7 792 aa10.95□□□□□ -0.66
CUX1-204ENST00000393824 FAM95CA0A1B0GW59 222 aa10.95□□□□□ -0.66
CUX1-204ENST00000393824 A8MT66 165 aa10.95□□□□□ -0.66
CUX1-204ENST00000393824 AXIN1O15169 862 aa10.95□□□□□ -0.66
CUX1-204ENST00000393824 IRAK2O43187 625 aa10.95□□□□□ -0.66
CUX1-204ENST00000393824 TLR5O60602 858 aa10.95□□□□□ -0.66
CUX1-204ENST00000393824 PTTG1O95997 202 aa10.95□□□□□ -0.66
CUX1-204ENST00000393824 ERCC2P18074 760 aa10.95□□□□□ -0.66
CUX1-204ENST00000393824 KCNA5P22460 613 aa10.95□□□□□ -0.66
CUX1-204ENST00000393824 ADRA1BP35368 520 aa10.95□□□□□ -0.66
CUX1-204ENST00000393824 CTAG1AP78358 180 aa10.95□□□□□ -0.66
CUX1-204ENST00000393824 POU4F1Q01851 419 aa10.95□□□□□ -0.66
CUX1-204ENST00000393824 IMPG1Q17R60 797 aa10.95□□□□□ -0.66
CUX1-204ENST00000393824 TECRLQ5HYJ1 363 aa10.95□□□□□ -0.66
CUX1-204ENST00000393824 CATSPEREQ5SY80 951 aa10.95□□□□□ -0.66
CUX1-204ENST00000393824 SLC22A9Q8IVM8 553 aa10.95□□□□□ -0.66
CUX1-204ENST00000393824 MFSD6LQ8IWD5 586 aa10.95□□□□□ -0.66
CUX1-204ENST00000393824 TP53INP2Q8IXH6 220 aa10.95□□□□□ -0.66
CUX1-204ENST00000393824 SPATA6LQ8N4H0 392 aa10.95□□□□□ -0.66
CUX1-204ENST00000393824 SVOPQ8N4V2 548 aa10.95□□□□□ -0.66
CUX1-204ENST00000393824 FAR1Q8WVX9 515 aa10.95□□□□□ -0.66
CUX1-204ENST00000393824 HTRA1Q92743 480 aa10.95□□□□□ -0.66
CUX1-204ENST00000393824 PSMG2Q969U7 264 aa10.95□□□□□ -0.66
CUX1-204ENST00000393824 BIRC7Q96CA5 298 aa10.95□□□□□ -0.66
CUX1-204ENST00000393824 EGLN2Q96KS0 407 aa10.95□□□□□ -0.66
CUX1-204ENST00000393824 TSGA13Q96PP4 275 aa10.95□□□□□ -0.66
CUX1-204ENST00000393824 PPP1R2P1Q96PQ5 205 aa10.95□□□□□ -0.66
CUX1-204ENST00000393824 ZNF300Q96RE9 604 aaPredicted RBP10.95□□□□□ -0.66
CUX1-204ENST00000393824 LRRC3Q9BY71 257 aa10.95□□□□□ -0.66
CUX1-204ENST00000393824 SLIRPQ9GZT3 109 aaKnown RBP10.95□□□□□ -0.66
CUX1-204ENST00000393824 SLC28A3Q9HAS3 691 aa10.95□□□□□ -0.66
CUX1-204ENST00000393824 SLCO3A1Q9UIG8 710 aa10.95□□□□□ -0.66
CUX1-204ENST00000393824 OAS3Q9Y6K5 1087 aaKnown RBP10.95□□□□□ -0.66
CUX1-204ENST00000393824 ATP6AP2A0A1C7CYW4 349 aa10.94□□□□□ -0.66
CUX1-204ENST00000393824 TAF4O00268 1085 aa10.94□□□□□ -0.66
CUX1-204ENST00000393824 IDH3BO43837 385 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms