RNA–Protein interactions for RNA: ENST00000374730.2

USP48-202, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-202ENST00000374730 RFX8Q6ZV50 586 aa4.81□□□□□ -1.64
USP48-202ENST00000374730 BEND5Q7L4P6 421 aa4.81□□□□□ -1.64
USP48-202ENST00000374730 CCDC91Q7Z6B0 441 aa4.81□□□□□ -1.64
USP48-202ENST00000374730 MRPL10Q7Z7H8 261 aaKnown RBP4.81□□□□□ -1.64
USP48-202ENST00000374730 DTX2Q86UW9 622 aa4.81□□□□□ -1.64
USP48-202ENST00000374730 KLHDC8BQ8IXV7 354 aa4.81□□□□□ -1.64
USP48-202ENST00000374730 SIX6OS1Q8N1H7 587 aa4.81□□□□□ -1.64
USP48-202ENST00000374730 SCML4Q8N228 414 aa4.81□□□□□ -1.64
USP48-202ENST00000374730 PYROXD2Q8N2H3 581 aa4.81□□□□□ -1.64
USP48-202ENST00000374730 MPP5Q8N3R9 675 aa4.81□□□□□ -1.64
USP48-202ENST00000374730 KIF2BQ8N4N8 673 aa4.81□□□□□ -1.64
USP48-202ENST00000374730 CAMKK1Q8N5S9 505 aa4.81□□□□□ -1.64
USP48-202ENST00000374730 DDX51Q8N8A6 666 aaKnown RBP eCLIP4.81□□□□□ -1.64
USP48-202ENST00000374730 COLGALT1Q8NBJ5 622 aa4.81□□□□□ -1.64
USP48-202ENST00000374730 FAM46DQ8NEK8 389 aa4.81□□□□□ -1.64
USP48-202ENST00000374730 RFWD2Q8NHY2 731 aa4.81□□□□□ -1.64
USP48-202ENST00000374730 IRGQQ8WZA9 623 aa4.81□□□□□ -1.64
USP48-202ENST00000374730 CDKL2Q92772 493 aa4.81□□□□□ -1.64
USP48-202ENST00000374730 DPF1Q92782 380 aa4.81□□□□□ -1.64
USP48-202ENST00000374730 FAM149B1Q96BN6 582 aa4.81□□□□□ -1.64
USP48-202ENST00000374730 MTFMTQ96DP5 389 aaKnown RBP4.81□□□□□ -1.64
USP48-202ENST00000374730 SLC35A4Q96G79 324 aa4.81□□□□□ -1.64
USP48-202ENST00000374730 P2RY11Q96G91 374 aa4.81□□□□□ -1.64
USP48-202ENST00000374730 OXNAD1Q96HP4 312 aaPredicted RBP4.81□□□□□ -1.64
USP48-202ENST00000374730 SENP8Q96LD8 212 aa4.81□□□□□ -1.64
USP48-202ENST00000374730 ANKRD27Q96NW4 1050 aa4.81□□□□□ -1.64
USP48-202ENST00000374730 SYT15Q9BQS2 421 aa4.81□□□□□ -1.64
USP48-202ENST00000374730 SIKE1Q9BRV8 207 aa4.81□□□□□ -1.64
USP48-202ENST00000374730 MTG1Q9BT17 334 aaPredicted RBP4.81□□□□□ -1.64
USP48-202ENST00000374730 UPF3AQ9H1J1 476 aaKnown RBP4.81□□□□□ -1.64
USP48-202ENST00000374730 EBF2Q9HAK2 575 aa4.81□□□□□ -1.64
USP48-202ENST00000374730 WDR6Q9NNW5 1121 aaKnown RBP4.81□□□□□ -1.64
USP48-202ENST00000374730 BAIAP2L1Q9UHR4 511 aa4.81□□□□□ -1.64
USP48-202ENST00000374730 CPA4Q9UI42 421 aa4.81□□□□□ -1.64
USP48-202ENST00000374730 ADAM28Q9UKQ2 775 aa4.81□□□□□ -1.64
USP48-202ENST00000374730 CDH9Q9ULB4 789 aa4.81□□□□□ -1.64
USP48-202ENST00000374730 SH2B3Q9UQQ2 575 aa4.81□□□□□ -1.64
USP48-202ENST00000374730 MFHAS1Q9Y4C4 1052 aa4.81□□□□□ -1.64
USP48-202ENST00000374730 MAD1L1Q9Y6D9 718 aa4.81□□□□□ -1.64
USP48-202ENST00000374730 NYNRINQ9P2P1 1898 aaKnown RBP4.81□□□□□ -1.64
USP48-202ENST00000374730 WDR91A4D1P6 747 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 DNAJC9-AS1A6NH13 148 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 HHLA1C9JL84 531 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 E7ENQ6 273 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 H3BUI4 141 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 CLDN5O00501 218 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 TLR5O60602 858 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 UGT1A9O60656 530 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 DNAJB5O75953 348 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 BEST1O76090 585 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 AP2A1O95782 977 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 F9P00740 461 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 IGLV3-25P01717 112 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 THP07101 528 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 DLDP09622 509 aaKnown RBP4.8□□□□□ -1.64
USP48-202ENST00000374730 ERCC2P18074 760 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 CALB2P22676 271 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 ACAT1P24752 427 aaKnown RBP4.8□□□□□ -1.64
USP48-202ENST00000374730 PSMB4P28070 264 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 PPIFP30405 207 aaKnown RBP4.8□□□□□ -1.64
USP48-202ENST00000374730 CYP2C18P33260 490 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 HTR7P34969 479 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 SERPINB6P35237 376 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 MLH1P40692 756 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 GARSP41250 739 aaKnown RBP4.8□□□□□ -1.64
USP48-202ENST00000374730 GRIA1P42261 906 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 HALP42357 657 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 CXCR3P49682 368 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 CCNG1P51959 295 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 TPI1P60174 286 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 PITX1P78337 314 aaPredicted RBP4.8□□□□□ -1.64
USP48-202ENST00000374730 BEX3Q00994 111 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 MGAT3Q09327 533 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 GALNT2Q10471 571 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 AP1B1Q10567 949 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 BST1Q10588 318 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 BOP1Q14137 746 aaKnown RBP4.8□□□□□ -1.64
USP48-202ENST00000374730 CRYMQ14894 314 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 CCL14Q16627 93 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 INSCQ1MX18 579 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 ARL13BQ3SXY8 428 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 TAF1BQ53T94 588 aaPredicted RBP4.8□□□□□ -1.64
USP48-202ENST00000374730 CCDC157Q569K6 752 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 WASHC2DQ5SRD0 308 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 SYPL2Q5VXT5 272 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 ITPRIPL1Q6GPH6 555 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 ANKRD16Q6P6B7 361 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 TMEM108Q6UXF1 575 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 PACS1Q6VY07 963 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 BHLHA9Q7RTU4 235 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 WDR53Q7Z5U6 358 aaPredicted RBP4.8□□□□□ -1.64
USP48-202ENST00000374730 SERINC5Q86VE9 423 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 ZNF567Q8N184 647 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 STKLD1Q8NE28 680 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 ZMIZ2Q8NF64 920 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 SEMA6DQ8NFY4 1073 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 AGAP11Q8TF27 550 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 DEPDC1BQ8WUY9 529 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 ARNTL2Q8WYA1 636 aa4.8□□□□□ -1.64
USP48-202ENST00000374730 HDAC11Q96DB2 347 aa4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms