RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 CSHL1Q14406 222 aa3.93□□□□□ -1.78
LIG4-201ENST00000356922 TSNQ15631 228 aaKnown RBP3.93□□□□□ -1.78
LIG4-201ENST00000356922 RPE65Q16518 533 aa3.93□□□□□ -1.78
LIG4-201ENST00000356922 PPP1R3AQ16821 1122 aa3.93□□□□□ -1.78
LIG4-201ENST00000356922 NKAIN2Q5VXU1 208 aa3.93□□□□□ -1.78
LIG4-201ENST00000356922 ZNF449Q6P9G9 518 aa3.93□□□□□ -1.78
LIG4-201ENST00000356922 TRABD2AQ86V40 505 aa3.93□□□□□ -1.78
LIG4-201ENST00000356922 TDRPQ86YL5 185 aa3.93□□□□□ -1.78
LIG4-201ENST00000356922 SRRM1Q8IYB3 904 aaKnown RBP3.93□□□□□ -1.78
LIG4-201ENST00000356922 KIAA2013Q8IYS2 634 aa3.93□□□□□ -1.78
LIG4-201ENST00000356922 CNPY4Q8N129 248 aa3.93□□□□□ -1.78
LIG4-201ENST00000356922 ZBTB2Q8N680 514 aa3.93□□□□□ -1.78
LIG4-201ENST00000356922 LINC01555Q8NAE3 123 aa3.93□□□□□ -1.78
LIG4-201ENST00000356922 PPFIBP2Q8ND30 876 aa3.93□□□□□ -1.78
LIG4-201ENST00000356922 DENND1AQ8TEH3 1009 aa3.93□□□□□ -1.78
LIG4-201ENST00000356922 ASB11Q8WXH4 323 aa3.93□□□□□ -1.78
LIG4-201ENST00000356922 CDKL2Q92772 493 aa3.93□□□□□ -1.78
LIG4-201ENST00000356922 ISL2Q96A47 359 aa3.93□□□□□ -1.78
LIG4-201ENST00000356922 LINGO1Q96FE5 620 aa3.93□□□□□ -1.78
LIG4-201ENST00000356922 LOXL4Q96JB6 756 aa3.93□□□□□ -1.78
LIG4-201ENST00000356922 RUFY1Q96T51 708 aa3.93□□□□□ -1.78
LIG4-201ENST00000356922 SYNPO2LQ9H987 977 aa3.93□□□□□ -1.78
LIG4-201ENST00000356922 GPAMQ9HCL2 828 aa3.93□□□□□ -1.78
LIG4-201ENST00000356922 MLXIPLQ9NP71 852 aa3.93□□□□□ -1.78
LIG4-201ENST00000356922 KCTD5Q9NXV2 234 aa3.93□□□□□ -1.78
LIG4-201ENST00000356922 CPSF2Q9P2I0 782 aaKnown RBP3.93□□□□□ -1.78
LIG4-201ENST00000356922 SLC17A7Q9P2U7 560 aa3.93□□□□□ -1.78
LIG4-201ENST00000356922 NCDNQ9UBB6 729 aa3.93□□□□□ -1.78
LIG4-201ENST00000356922 ZNF180Q9UJW8 692 aa3.93□□□□□ -1.78
LIG4-201ENST00000356922 KIF26BQ2KJY2 2108 aa3.93□□□□□ -1.78
LIG4-201ENST00000356922 C17orf113A0A1B0GUU1 675 aa3.93□□□□□ -1.78
LIG4-201ENST00000356922 LOC105378220A0A1B0GUY1 285 aaPredicted RBP3.93□□□□□ -1.78
LIG4-201ENST00000356922 ARHGEF33A8MVX0 844 aa3.93□□□□□ -1.78
LIG4-201ENST00000356922 B4DGG1 531 aa3.93□□□□□ -1.78
LIG4-201ENST00000356922 E5RI56 91 aa3.93□□□□□ -1.78
LIG4-201ENST00000356922 TK2O00142 265 aa3.93□□□□□ -1.78
LIG4-201ENST00000356922 CLGNO14967 610 aa3.93□□□□□ -1.78
LIG4-201ENST00000356922 CBFA2T3O75081 653 aa3.93□□□□□ -1.78
LIG4-201ENST00000356922 AP2A2O94973 939 aa3.93□□□□□ -1.78
LIG4-201ENST00000356922 SNRPAP09012 282 aaKnown RBP3.93□□□□□ -1.78
LIG4-201ENST00000356922 OR56A5P0C7T3 313 aa3.93□□□□□ -1.78
LIG4-201ENST00000356922 CTSEP14091 401 aa3.93□□□□□ -1.78
LIG4-201ENST00000356922 TYK2P29597 1187 aa3.93□□□□□ -1.78
LIG4-201ENST00000356922 NUDT1P36639 197 aa3.93□□□□□ -1.78
LIG4-201ENST00000356922 PPARGP37231 505 aaPredicted RBP3.93□□□□□ -1.78
LIG4-201ENST00000356922 GDF5P43026 501 aa3.93□□□□□ -1.78
LIG4-201ENST00000356922 CCR10P46092 362 aa3.93□□□□□ -1.78
LIG4-201ENST00000356922 BDKRB1P46663 353 aa3.93□□□□□ -1.78
LIG4-201ENST00000356922 SNRPNP63162 240 aaKnown RBP3.93□□□□□ -1.78
LIG4-201ENST00000356922 DMPKQ09013 629 aa3.93□□□□□ -1.78
LIG4-201ENST00000356922 PTK2BQ14289 1009 aa3.93□□□□□ -1.78
LIG4-201ENST00000356922 UAP1L1Q3KQV9 507 aa3.93□□□□□ -1.78
LIG4-201ENST00000356922 KRT71Q3SY84 523 aa3.93□□□□□ -1.78
LIG4-201ENST00000356922 AARS2Q5JTZ9 985 aaKnown RBP3.93□□□□□ -1.78
LIG4-201ENST00000356922 ARMC3Q5W041 872 aa3.93□□□□□ -1.78
LIG4-201ENST00000356922 ABRAXAS1Q6UWZ7 409 aa3.93□□□□□ -1.78
LIG4-201ENST00000356922 C17orf82Q86X59 251 aaPredicted RBP3.93□□□□□ -1.78
LIG4-201ENST00000356922 LMNTD2Q8IXW0 634 aa3.93□□□□□ -1.78
LIG4-201ENST00000356922 SLC22A15Q8IZD6 547 aa3.93□□□□□ -1.78
LIG4-201ENST00000356922 SHISA5Q8N114 240 aa3.93□□□□□ -1.78
LIG4-201ENST00000356922 SFRP1Q8N474 314 aa3.93□□□□□ -1.78
LIG4-201ENST00000356922 ARL14Q8N4G2 192 aa3.93□□□□□ -1.78
LIG4-201ENST00000356922 KYQ8NBH2 561 aa3.93□□□□□ -1.78
LIG4-201ENST00000356922 MDM1Q8TC05 714 aa3.93□□□□□ -1.78
LIG4-201ENST00000356922 RNF31Q96EP0 1072 aa3.93□□□□□ -1.78
LIG4-201ENST00000356922 TMEM109Q9BVC6 243 aa3.93□□□□□ -1.78
LIG4-201ENST00000356922 TBC1D10AQ9BXI6 508 aa3.93□□□□□ -1.78
LIG4-201ENST00000356922 VPS11Q9H270 941 aa3.93□□□□□ -1.78
LIG4-201ENST00000356922 RDH14Q9HBH5 336 aa3.93□□□□□ -1.78
LIG4-201ENST00000356922 IMP3Q9NV31 184 aaKnown RBP3.93□□□□□ -1.78
LIG4-201ENST00000356922 PCMTD2Q9NV79 361 aa3.93□□□□□ -1.78
LIG4-201ENST00000356922 TAS2R13Q9NYV9 303 aa3.93□□□□□ -1.78
LIG4-201ENST00000356922 PSMC3IPQ9P2W1 217 aaPredicted RBP3.93□□□□□ -1.78
LIG4-201ENST00000356922 SLC24A2Q9UI40 661 aa3.93□□□□□ -1.78
LIG4-201ENST00000356922 GNPTGQ9UJJ9 305 aa3.93□□□□□ -1.78
LIG4-201ENST00000356922 PCDHGA5Q9Y5G8 931 aa3.93□□□□□ -1.78
LIG4-201ENST00000356922 ANKRD11Q6UB99 2663 aaPredicted RBP3.93□□□□□ -1.78
LIG4-201ENST00000356922 NPEPPSL1A6NEC2 478 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 NCF1BA6NI72 391 aaPredicted RBP3.92□□□□□ -1.78
LIG4-201ENST00000356922 PDZK1P1A8MUH7 402 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 NCF1CA8MVU1 366 aaPredicted RBP3.92□□□□□ -1.78
LIG4-201ENST00000356922 GFYI3L273 518 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 TM4SF5O14894 197 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 B4GAT1O43505 415 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 TYROBPO43914 113 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 PRAMEF4O60810 478 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 CDH16O75309 829 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 ERLIN1O75477 346 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 TUBBP07437 444 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 NCF1P14598 390 aaPredicted RBP3.92□□□□□ -1.78
LIG4-201ENST00000356922 STMN1P16949 149 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 MPSTP25325 297 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 ARRB2P32121 409 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 RPA3P35244 121 aaPredicted RBP3.92□□□□□ -1.78
LIG4-201ENST00000356922 AGTR2P50052 363 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 HNRNPKP61978 463 aaKnown RBP eCLIP3.92□□□□□ -1.78
LIG4-201ENST00000356922 POU4F1Q01851 419 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 GTF2H3Q13889 308 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 CSRP2Q16527 193 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 PERM1Q5SV97 790 aa3.92□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms