RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 ADAMTSL4Q6UY14 1074 aa9.01□□□□□ -0.97
USP4-202ENST00000351842 ADCK2Q7Z695 626 aa9.01□□□□□ -0.97
USP4-202ENST00000351842 PARGQ86W56 976 aa9.01□□□□□ -0.97
USP4-202ENST00000351842 C10orf107Q8IVU9 208 aa9.01□□□□□ -0.97
USP4-202ENST00000351842 KCNJ9Q92806 393 aa9.01□□□□□ -0.97
USP4-202ENST00000351842 PGM2Q96G03 612 aa9.01□□□□□ -0.97
USP4-202ENST00000351842 DHRS4Q9BTZ2 278 aa9.01□□□□□ -0.97
USP4-202ENST00000351842 SCHIP1Q9P0W5 487 aaPredicted RBP9.01□□□□□ -0.97
USP4-202ENST00000351842 PCDHB1Q9Y5F3 818 aa9.01□□□□□ -0.97
USP4-202ENST00000351842 SPTY2D1-AS1A0A0U1RR47 76 aa9.01□□□□□ -0.97
USP4-202ENST00000351842 HMGB1P1B2RPK0 211 aaPredicted RBP9.01□□□□□ -0.97
USP4-202ENST00000351842 CCNT2O60583 730 aaKnown RBP9.01□□□□□ -0.97
USP4-202ENST00000351842 LYPLA1O75608 230 aaPredicted RBP9.01□□□□□ -0.97
USP4-202ENST00000351842 SUPT7LO94864 414 aa9.01□□□□□ -0.97
USP4-202ENST00000351842 FDXRP22570 491 aa9.01□□□□□ -0.97
USP4-202ENST00000351842 HSPA7P48741 367 aa9.01□□□□□ -0.97
USP4-202ENST00000351842 NAGLUP54802 743 aa9.01□□□□□ -0.97
USP4-202ENST00000351842 PFN3P60673 137 aa9.01□□□□□ -0.97
USP4-202ENST00000351842 EIF2B5Q13144 721 aaKnown RBP9.01□□□□□ -0.97
USP4-202ENST00000351842 ITIH4Q14624 930 aa9.01□□□□□ -0.97
USP4-202ENST00000351842 PYCR3Q53H96 274 aa9.01□□□□□ -0.97
USP4-202ENST00000351842 LRRC8EQ6NSJ5 796 aa9.01□□□□□ -0.97
USP4-202ENST00000351842 MZB1Q8WU39 189 aa9.01□□□□□ -0.97
USP4-202ENST00000351842 TFGQ92734 400 aaPredicted RBP9.01□□□□□ -0.97
USP4-202ENST00000351842 ATP6V1E2Q96A05 226 aa9.01□□□□□ -0.97
USP4-202ENST00000351842 APOPT1Q96IL0 206 aa9.01□□□□□ -0.97
USP4-202ENST00000351842 CDK15Q96Q40 435 aa9.01□□□□□ -0.97
USP4-202ENST00000351842 CAPS2Q9BXY5 557 aa9.01□□□□□ -0.97
USP4-202ENST00000351842 SEMA4BQ9NPR2 832 aaPredicted RBP9.01□□□□□ -0.97
USP4-202ENST00000351842 ZSCAN32Q9NX65 697 aa9.01□□□□□ -0.97
USP4-202ENST00000351842 KCTD5Q9NXV2 234 aa9.01□□□□□ -0.97
USP4-202ENST00000351842 ZNF180Q9UJW8 692 aa9.01□□□□□ -0.97
USP4-202ENST00000351842 CFAP47Q6ZTR5 3102 aa9□□□□□ -0.97
USP4-202ENST00000351842 KMOO15229 486 aa9□□□□□ -0.97
USP4-202ENST00000351842 KIF1CO43896 1103 aaKnown RBP9□□□□□ -0.97
USP4-202ENST00000351842 TNFP01375 233 aa9□□□□□ -0.97
USP4-202ENST00000351842 IDSP22304 550 aa9□□□□□ -0.97
USP4-202ENST00000351842 DGKAP23743 735 aa9□□□□□ -0.97
USP4-202ENST00000351842 CRABP2P29373 138 aa9□□□□□ -0.97
USP4-202ENST00000351842 PRLHRP49683 370 aa9□□□□□ -0.97
USP4-202ENST00000351842 CLCA4Q14CN2 919 aa9□□□□□ -0.97
USP4-202ENST00000351842 CHI3L2Q15782 390 aa9□□□□□ -0.97
USP4-202ENST00000351842 SGO1Q5FBB7 561 aa9□□□□□ -0.97
USP4-202ENST00000351842 CFAP157Q5JU67 520 aa9□□□□□ -0.97
USP4-202ENST00000351842 ZNF449Q6P9G9 518 aa9□□□□□ -0.97
USP4-202ENST00000351842 GPSM1Q86YR5 675 aa9□□□□□ -0.97
USP4-202ENST00000351842 NUDCD3Q8IVD9 361 aa9□□□□□ -0.97
USP4-202ENST00000351842 PTGR2Q8N8N7 351 aaPredicted RBP9□□□□□ -0.97
USP4-202ENST00000351842 OR4E2Q8NGC2 313 aa9□□□□□ -0.97
USP4-202ENST00000351842 SETD7Q8WTS6 366 aaKnown RBP9□□□□□ -0.97
USP4-202ENST00000351842 INPP5DQ92835 1189 aa9□□□□□ -0.97
USP4-202ENST00000351842 CXorf40BQ96DE9 158 aa9□□□□□ -0.97
USP4-202ENST00000351842 MTBPQ96DY7 904 aa9□□□□□ -0.97
USP4-202ENST00000351842 PRR11Q96HE9 360 aaPredicted RBP9□□□□□ -0.97
USP4-202ENST00000351842 FOPNLQ96NB1 174 aa9□□□□□ -0.97
USP4-202ENST00000351842 KDM4CQ9H3R0 1056 aa9□□□□□ -0.97
USP4-202ENST00000351842 SLCO1B3Q9NPD5 702 aa9□□□□□ -0.97
USP4-202ENST00000351842 WWOXQ9NZC7 414 aa9□□□□□ -0.97
USP4-202ENST00000351842 DHRS7Q9Y394 339 aa9□□□□□ -0.97
USP4-202ENST00000351842 ASB1Q9Y576 335 aa9□□□□□ -0.97
USP4-202ENST00000351842 ACACAQ13085 2346 aa9□□□□□ -0.97
USP4-202ENST00000351842 MGAT4DA6NG13 374 aa9□□□□□ -0.97
USP4-202ENST00000351842 PPP6CO00743 305 aa9□□□□□ -0.97
USP4-202ENST00000351842 HIST1H2AGP0C0S8 130 aaPredicted RBP9□□□□□ -0.97
USP4-202ENST00000351842 VCLP18206 1134 aa9□□□□□ -0.97
USP4-202ENST00000351842 HIST1H2ADP20671 130 aa9□□□□□ -0.97
USP4-202ENST00000351842 RPIAP49247 311 aa9□□□□□ -0.97
USP4-202ENST00000351842 SEC24CP53992 1094 aa9□□□□□ -0.97
USP4-202ENST00000351842 GRIK2Q13002 908 aa9□□□□□ -0.97
USP4-202ENST00000351842 LYPLAL1Q5VWZ2 237 aa9□□□□□ -0.97
USP4-202ENST00000351842 UGT3A1Q6NUS8 523 aa9□□□□□ -0.97
USP4-202ENST00000351842 ZC3H14Q6PJT7 736 aaKnown RBP9□□□□□ -0.97
USP4-202ENST00000351842 SCIMPQ6UWF3 145 aa9□□□□□ -0.97
USP4-202ENST00000351842 USP53Q70EK8 1073 aa9□□□□□ -0.97
USP4-202ENST00000351842 YTHDF3Q7Z739 585 aaKnown RBP9□□□□□ -0.97
USP4-202ENST00000351842 LMNTD2Q8IXW0 634 aa9□□□□□ -0.97
USP4-202ENST00000351842 BANPQ8N9N5 519 aa9□□□□□ -0.97
USP4-202ENST00000351842 HIST1H2AHQ96KK5 128 aa9□□□□□ -0.97
USP4-202ENST00000351842 NSUN5Q96P11 429 aaKnown RBP9□□□□□ -0.97
USP4-202ENST00000351842 HIST1H2AJQ99878 128 aa9□□□□□ -0.97
USP4-202ENST00000351842 ORAI3Q9BRQ5 295 aa9□□□□□ -0.97
USP4-202ENST00000351842 H2AFJQ9BTM1 129 aa9□□□□□ -0.97
USP4-202ENST00000351842 LRRC61Q9BV99 259 aa9□□□□□ -0.97
USP4-202ENST00000351842 SYTL2Q9HCH5 934 aa9□□□□□ -0.97
USP4-202ENST00000351842 EURLQ9NYK6 297 aa9□□□□□ -0.97
USP4-202ENST00000351842 RIMKLBQ9ULI2 386 aa9□□□□□ -0.97
USP4-202ENST00000351842 GRID1Q9ULK0 1009 aa9□□□□□ -0.97
USP4-202ENST00000351842 G3BP2Q9UN86 482 aaKnown RBP9□□□□□ -0.97
USP4-202ENST00000351842 FANCMQ8IYD8 2048 aa9□□□□□ -0.97
USP4-202ENST00000351842 RGSL1A5PLK6 1076 aa8.99□□□□□ -0.97
USP4-202ENST00000351842 MAGEC1O60732 1142 aa8.99□□□□□ -0.97
USP4-202ENST00000351842 AOAHP28039 575 aa8.99□□□□□ -0.97
USP4-202ENST00000351842 MPLP40238 635 aa8.99□□□□□ -0.97
USP4-202ENST00000351842 CCR5P51681 352 aa8.99□□□□□ -0.97
USP4-202ENST00000351842 WDR4P57081 412 aaKnown RBP8.99□□□□□ -0.97
USP4-202ENST00000351842 DDX39BQ13838 428 aaKnown RBP8.99□□□□□ -0.97
USP4-202ENST00000351842 TEAD4Q15561 434 aa8.99□□□□□ -0.97
USP4-202ENST00000351842 MACC1Q6ZN28 852 aa8.99□□□□□ -0.97
USP4-202ENST00000351842 C11orf96Q7Z7L8 435 aa8.99□□□□□ -0.97
USP4-202ENST00000351842 COX14Q96I36 57 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms