RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 LOC730098B7Z3J9 87 aa18.98■□□□□ 0.63
COL9A3-201ENST00000343916 GPIP06744 558 aa18.98■□□□□ 0.63
COL9A3-201ENST00000343916 B4GALNT1Q00973 533 aa18.98■□□□□ 0.63
COL9A3-201ENST00000343916 SLC44A4Q53GD3 710 aa18.98■□□□□ 0.63
COL9A3-201ENST00000343916 DET1Q7L5Y6 550 aa18.98■□□□□ 0.63
COL9A3-201ENST00000343916 TSPAN14Q8NG11 270 aa18.98■□□□□ 0.63
COL9A3-201ENST00000343916 CORO1BQ9BR76 489 aa18.98■□□□□ 0.63
COL9A3-201ENST00000343916 DDX18Q9NVP1 670 aaKnown RBP18.98■□□□□ 0.63
COL9A3-201ENST00000343916 IRAK4Q9NWZ3 460 aa18.98■□□□□ 0.63
COL9A3-201ENST00000343916 CD84Q9UIB8 345 aa18.98■□□□□ 0.63
COL9A3-201ENST00000343916 KRT87PA6NCN2 255 aa18.98■□□□□ 0.63
COL9A3-201ENST00000343916 LILRB3O75022 631 aa18.98■□□□□ 0.63
COL9A3-201ENST00000343916 H6PDO95479 791 aa18.98■□□□□ 0.63
COL9A3-201ENST00000343916 CLIC3O95833 236 aa18.98■□□□□ 0.63
COL9A3-201ENST00000343916 CSF2RAP15509 400 aa18.98■□□□□ 0.63
COL9A3-201ENST00000343916 SNRPD1P62314 119 aaKnown RBP18.98■□□□□ 0.63
COL9A3-201ENST00000343916 GPR33Q49SQ1 333 aa18.98■□□□□ 0.63
COL9A3-201ENST00000343916 MPP7Q5T2T1 576 aa18.98■□□□□ 0.63
COL9A3-201ENST00000343916 INTS11Q5TA45 600 aaKnown RBP18.98■□□□□ 0.63
COL9A3-201ENST00000343916 SULT1C3Q6IMI6 304 aa18.98■□□□□ 0.63
COL9A3-201ENST00000343916 DPP10Q8N608 796 aa18.98■□□□□ 0.63
COL9A3-201ENST00000343916 BIRC7Q96CA5 298 aa18.98■□□□□ 0.63
COL9A3-201ENST00000343916 SCRN2Q96FV2 425 aa18.98■□□□□ 0.63
COL9A3-201ENST00000343916 CGREF1Q99674 301 aa18.98■□□□□ 0.63
COL9A3-201ENST00000343916 PTTG2Q9NZH5 202 aa18.98■□□□□ 0.63
COL9A3-201ENST00000343916 SLCO3A1Q9UIG8 710 aa18.98■□□□□ 0.63
COL9A3-201ENST00000343916 ANAPC2Q9UJX6 822 aa18.98■□□□□ 0.63
COL9A3-201ENST00000343916 ZNF490Q9ULM2 529 aaPredicted RBP18.98■□□□□ 0.63
COL9A3-201ENST00000343916 NEUROG3Q9Y4Z2 214 aa18.98■□□□□ 0.63
COL9A3-201ENST00000343916 CROCCQ5TZA2 2017 aa18.98■□□□□ 0.63
COL9A3-201ENST00000343916 CDH23Q9H251 3354 aa18.98■□□□□ 0.63
COL9A3-201ENST00000343916 ACOX3O15254 700 aa18.97■□□□□ 0.63
COL9A3-201ENST00000343916 UGT2B4P06133 528 aa18.97■□□□□ 0.63
COL9A3-201ENST00000343916 C8AP07357 584 aa18.97■□□□□ 0.63
COL9A3-201ENST00000343916 VARSP26640 1264 aaKnown RBP18.97■□□□□ 0.63
COL9A3-201ENST00000343916 CCR7P32248 378 aa18.97■□□□□ 0.63
COL9A3-201ENST00000343916 SPATS1Q496A3 300 aa18.97■□□□□ 0.63
COL9A3-201ENST00000343916 TPRG1Q6ZUI0 275 aa18.97■□□□□ 0.63
COL9A3-201ENST00000343916 GOLM1Q8NBJ4 401 aa18.97■□□□□ 0.63
COL9A3-201ENST00000343916 SLC22A17Q8WUG5 538 aa18.97■□□□□ 0.63
COL9A3-201ENST00000343916 TOX2Q96NM4 488 aa18.97■□□□□ 0.63
COL9A3-201ENST00000343916 YME1L1Q96TA2 773 aa18.97■□□□□ 0.63
COL9A3-201ENST00000343916 HCFC1R1Q9NWW0 138 aa18.97■□□□□ 0.63
COL9A3-201ENST00000343916 VAPAQ9P0L0 249 aa18.97■□□□□ 0.63
COL9A3-201ENST00000343916 DENND4CQ5VZ89 1909 aa18.97■□□□□ 0.63
COL9A3-201ENST00000343916 ZNF106Q9H2Y7 1883 aaKnown RBP18.97■□□□□ 0.63
COL9A3-201ENST00000343916 TRAV19A0A0A6YYK7 116 aa18.97■□□□□ 0.63
COL9A3-201ENST00000343916 K7EPI3 171 aa18.97■□□□□ 0.63
COL9A3-201ENST00000343916 EI24O14681 340 aa18.97■□□□□ 0.63
COL9A3-201ENST00000343916 ULK1O75385 1050 aa18.97■□□□□ 0.63
COL9A3-201ENST00000343916 ACRP10323 421 aa18.97■□□□□ 0.63
COL9A3-201ENST00000343916 HTR1EP28566 365 aa18.97■□□□□ 0.63
COL9A3-201ENST00000343916 RFC2P35250 354 aa18.97■□□□□ 0.63
COL9A3-201ENST00000343916 CCR2P41597 374 aa18.97■□□□□ 0.63
COL9A3-201ENST00000343916 NSG1P42857 185 aa18.97■□□□□ 0.63
COL9A3-201ENST00000343916 WDR5P61964 334 aaKnown RBP18.97■□□□□ 0.63
COL9A3-201ENST00000343916 FAM174BQ3ZCQ3 159 aa18.97■□□□□ 0.63
COL9A3-201ENST00000343916 LYPLAL1Q5VWZ2 237 aa18.97■□□□□ 0.63
COL9A3-201ENST00000343916 ASTLQ6HA08 431 aaPredicted RBP18.97■□□□□ 0.63
COL9A3-201ENST00000343916 GLYATQ6IB77 296 aa18.97■□□□□ 0.63
COL9A3-201ENST00000343916 C22orf39Q6P5X5 142 aa18.97■□□□□ 0.63
COL9A3-201ENST00000343916 DPY19L3Q6ZPD9 716 aa18.97■□□□□ 0.63
COL9A3-201ENST00000343916 CBARPQ8N350 705 aaPredicted RBP18.97■□□□□ 0.63
COL9A3-201ENST00000343916 DTWD1Q8N5C7 304 aa18.97■□□□□ 0.63
COL9A3-201ENST00000343916 KRTCAP2Q8N6L1 136 aa18.97■□□□□ 0.63
COL9A3-201ENST00000343916 CLHC1Q8NHS4 586 aa18.97■□□□□ 0.63
COL9A3-201ENST00000343916 SKA2Q8WVK7 121 aaPredicted RBP18.97■□□□□ 0.63
COL9A3-201ENST00000343916 PPP3R2Q96LZ3 170 aa18.97■□□□□ 0.63
COL9A3-201ENST00000343916 RBM38Q9H0Z9 239 aaKnown RBP18.97■□□□□ 0.63
COL9A3-201ENST00000343916 SUV39H2Q9H5I1 410 aa18.97■□□□□ 0.63
COL9A3-201ENST00000343916 PNPLA3Q9NST1 481 aa18.97■□□□□ 0.63
COL9A3-201ENST00000343916 AGAP14A8MT82 685 aa18.96■□□□□ 0.63
COL9A3-201ENST00000343916 DFNA5O60443 496 aa18.96■□□□□ 0.63
COL9A3-201ENST00000343916 FGF18O76093 207 aa18.96■□□□□ 0.63
COL9A3-201ENST00000343916 EPB42P16452 691 aa18.96■□□□□ 0.63
COL9A3-201ENST00000343916 JAK1P23458 1154 aa18.96■□□□□ 0.63
COL9A3-201ENST00000343916 CDH15P55291 814 aa18.96■□□□□ 0.63
COL9A3-201ENST00000343916 SH3BGRP55822 239 aaPredicted RBP18.96■□□□□ 0.63
COL9A3-201ENST00000343916 HSPA14Q0VDF9 509 aa18.96■□□□□ 0.63
COL9A3-201ENST00000343916 CRY1Q16526 586 aa18.96■□□□□ 0.63
COL9A3-201ENST00000343916 CPSF6Q16630 551 aaKnown RBP eCLIP18.96■□□□□ 0.63
COL9A3-201ENST00000343916 TBC1D25Q3MII6 688 aa18.96■□□□□ 0.63
COL9A3-201ENST00000343916 DNAJC14Q6Y2X3 702 aaPredicted RBP18.96■□□□□ 0.63
COL9A3-201ENST00000343916 B3GNT6Q6ZMB0 384 aa18.96■□□□□ 0.63
COL9A3-201ENST00000343916 TMEM25Q86YD3 366 aa18.96■□□□□ 0.63
COL9A3-201ENST00000343916 RGL4Q8IZJ4 473 aa18.96■□□□□ 0.63
COL9A3-201ENST00000343916 ULK4Q96C45 1275 aa18.96■□□□□ 0.63
COL9A3-201ENST00000343916 RNF145Q96MT1 663 aa18.96■□□□□ 0.63
COL9A3-201ENST00000343916 LYSMD1Q96S90 227 aa18.96■□□□□ 0.63
COL9A3-201ENST00000343916 ADI1Q9BV57 179 aa18.96■□□□□ 0.63
COL9A3-201ENST00000343916 MUC13Q9H3R2 512 aa18.96■□□□□ 0.63
COL9A3-201ENST00000343916 ABHD14A-ACY1A0A1B0GW23 586 aa18.96■□□□□ 0.63
COL9A3-201ENST00000343916 H3BNH8 94 aa18.96■□□□□ 0.63
COL9A3-201ENST00000343916 CCL16O15467 120 aa18.96■□□□□ 0.63
COL9A3-201ENST00000343916 RGS14O43566 566 aa18.96■□□□□ 0.63
COL9A3-201ENST00000343916 SEC22BO75396 215 aa18.96■□□□□ 0.63
COL9A3-201ENST00000343916 MTX2O75431 263 aa18.96■□□□□ 0.63
COL9A3-201ENST00000343916 RPIAP49247 311 aa18.96■□□□□ 0.63
COL9A3-201ENST00000343916 KIAA0040Q15053 153 aa18.96■□□□□ 0.63
COL9A3-201ENST00000343916 ATP6AP1Q15904 470 aa18.96■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms