RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 UNC5BQ8IZJ1 945 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 ZNF473Q8WTR7 871 aaKnown RBP3.24□□□□□ -1.89
CSMD3-202ENST00000339701 C2orf15Q8WU43 125 aaKnown RBP3.24□□□□□ -1.89
CSMD3-202ENST00000339701 SIPA1Q96FS4 1042 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 C16orf58Q96GQ5 468 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 MRPL57Q9BQC6 102 aaKnown RBP3.24□□□□□ -1.89
CSMD3-202ENST00000339701 KATNBL1Q9H079 304 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 UBE2TQ9NPD8 197 aaPredicted RBP3.24□□□□□ -1.89
CSMD3-202ENST00000339701 XPO7Q9UIA9 1087 aaKnown RBP3.24□□□□□ -1.89
CSMD3-202ENST00000339701 TBC1D24Q9ULP9 559 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 Q9Y3F1 56 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 A0A0G2JLL6 359 aaPredicted RBP3.24□□□□□ -1.89
CSMD3-202ENST00000339701 H7C1Q1 480 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 GRM6O15303 877 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 PRAF2O60831 178 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 TRMUO75648 421 aaKnown RBP3.24□□□□□ -1.89
CSMD3-202ENST00000339701 SLC25A12O75746 678 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 CBSLP0DN79 551 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 CBSP35520 551 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 CLCN5P51795 746 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 ACTA2P62736 377 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 ACTC1P68032 377 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 ACTA1P68133 377 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 SNTA1Q13424 505 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 C14orf28Q4W4Y0 310 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 NKAPLQ5M9Q1 402 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 RSBN1Q5VWQ0 802 aaPredicted RBP3.24□□□□□ -1.89
CSMD3-202ENST00000339701 USP51Q70EK9 711 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 PRRT2Q7Z6L0 340 aaPredicted RBP3.24□□□□□ -1.89
CSMD3-202ENST00000339701 DDIASQ8IXT1 998 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 TCTE3Q8IZS6 198 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 DQX1Q8TE96 717 aaKnown RBP3.24□□□□□ -1.89
CSMD3-202ENST00000339701 NAT6Q93015 286 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 OR52B2Q96RD2 323 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 PELOQ9BRX2 385 aaKnown RBP3.24□□□□□ -1.89
CSMD3-202ENST00000339701 RUSC1Q9BVN2 902 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 CASS4Q9NQ75 786 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 CMTM6Q9NX76 183 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 DLGAP2Q9P1A6 1054 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 XPR1Q9UBH6 696 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 ZDBF2Q9HCK1 2354 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 POLEQ07864 2286 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 LRRC10BA6NIK2 292 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 OR6C75A6NL08 312 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 FZD9O00144 591 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 HMGN1P05114 100 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 NFICP08651 508 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 HNRNPA1P09651 372 aaKnown RBP eCLIP3.24□□□□□ -1.89
CSMD3-202ENST00000339701 OR56A5P0C7T3 313 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 GGCXP38435 758 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 EIF3EP60228 445 aaKnown RBP3.24□□□□□ -1.89
CSMD3-202ENST00000339701 ACTBP60709 375 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 ACTG1P63261 375 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 ELOCQ15369 112 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 ADGRF1Q5T601 910 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 LRRC74BQ6ZQY2 392 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 TMEM110Q86TL2 294 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 RELL1Q8IUW5 271 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 EID2Q8N6I1 236 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 IPMKQ8NFU5 416 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 HNRNPABQ99729 332 aaKnown RBP3.24□□□□□ -1.89
CSMD3-202ENST00000339701 AMBRA1Q9C0C7 1298 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 RNF32Q9H0A6 362 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 SLC17A6Q9P2U8 582 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 B4GALT7Q9UBV7 327 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 SCP2D1Q9UJQ7 156 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 DDX3YO15523 660 aaKnown RBP3.24□□□□□ -1.89
CSMD3-202ENST00000339701 RPS17P08708 135 aaKnown RBP3.24□□□□□ -1.89
CSMD3-202ENST00000339701 HBQ1P09105 142 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 H2AFXP16104 143 aaPredicted RBP3.24□□□□□ -1.89
CSMD3-202ENST00000339701 COL9A1P20849 921 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 NUDT1P36639 197 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 NEK3P51956 506 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 HADHBP55084 474 aaKnown RBP3.24□□□□□ -1.89
CSMD3-202ENST00000339701 IL2P60568 153 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 PPARDQ03181 441 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 DUSP28Q4G0W2 176 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 PGM2L1Q6PCE3 622 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 DNAJC14Q6Y2X3 702 aaPredicted RBP3.24□□□□□ -1.89
CSMD3-202ENST00000339701 SSX8Q7RTT4 187 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 ALYREFQ86V81 257 aaKnown RBP3.24□□□□□ -1.89
CSMD3-202ENST00000339701 ZBTB8BQ8NAP8 495 aaPredicted RBP3.24□□□□□ -1.89
CSMD3-202ENST00000339701 FAM120BQ96EK7 910 aaKnown RBP3.24□□□□□ -1.89
CSMD3-202ENST00000339701 PAIP1Q9H074 479 aaKnown RBP3.24□□□□□ -1.89
CSMD3-202ENST00000339701 NUDT5Q9UKK9 219 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 KCNJ14Q9UNX9 436 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 CHD5Q8TDI0 1954 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 SMIM35A0A1B0GVV1 85 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 ESYT3A0FGR9 886 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 LRP5LA4QPB2 252 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 GPR37L1O60883 481 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 UBXN7O94888 489 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 PRNPP04156 253 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 NTSP30990 170 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 VEGFCP49767 419 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 VSX2P58304 361 aaPredicted RBP3.24□□□□□ -1.89
CSMD3-202ENST00000339701 YWHAZP63104 245 aaKnown RBP3.24□□□□□ -1.89
CSMD3-202ENST00000339701 MELKQ14680 651 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 CMPK2Q5EBM0 449 aa3.24□□□□□ -1.89
CSMD3-202ENST00000339701 TOR1AIP1Q5JTV8 583 aa3.24□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms