RNA–Protein interactions for RNA: ENST00000314759.5

SKA3-202, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SKA3, Length 2,919 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-202ENST00000314759 XPNPEP2O43895 674 aa13.21□□□□□ -0.29
SKA3-202ENST00000314759 VPS26AO75436 327 aa13.21□□□□□ -0.29
SKA3-202ENST00000314759 HMBSP08397 361 aa13.21□□□□□ -0.29
SKA3-202ENST00000314759 CNPP09543 421 aaKnown RBP13.21□□□□□ -0.29
SKA3-202ENST00000314759 PKMP14618 531 aaKnown RBP13.21□□□□□ -0.29
SKA3-202ENST00000314759 S100A1P23297 94 aa13.21□□□□□ -0.29
SKA3-202ENST00000314759 VBP1P61758 197 aa13.21□□□□□ -0.29
SKA3-202ENST00000314759 SLC13A2Q13183 592 aa13.21□□□□□ -0.29
SKA3-202ENST00000314759 TOP3AQ13472 1001 aaPredicted RBP13.21□□□□□ -0.29
SKA3-202ENST00000314759 ABRAXAS2Q15018 415 aa13.21□□□□□ -0.29
SKA3-202ENST00000314759 CATSPEREQ5SY80 951 aa13.21□□□□□ -0.29
SKA3-202ENST00000314759 ZNF691Q5VV52 312 aa13.21□□□□□ -0.29
SKA3-202ENST00000314759 GLT6D1Q7Z4J2 308 aa13.21□□□□□ -0.29
SKA3-202ENST00000314759 MRPL10Q7Z7H8 261 aaKnown RBP13.21□□□□□ -0.29
SKA3-202ENST00000314759 ATP6V0D2Q8N8Y2 350 aa13.21□□□□□ -0.29
SKA3-202ENST00000314759 CNIH3Q8TBE1 160 aa13.21□□□□□ -0.29
SKA3-202ENST00000314759 FAR1Q8WVX9 515 aa13.21□□□□□ -0.29
SKA3-202ENST00000314759 GTF2H4Q92759 462 aa13.21□□□□□ -0.29
SKA3-202ENST00000314759 EFHD2Q96C19 240 aaPredicted RBP13.21□□□□□ -0.29
SKA3-202ENST00000314759 TRPV2Q9Y5S1 764 aa13.21□□□□□ -0.29
SKA3-202ENST00000314759 MYO16Q9Y6X6 1858 aa13.21□□□□□ -0.29
SKA3-202ENST00000314759 CCL15-CCL14A0A0B4J2E2 113 aa13.21□□□□□ -0.3
SKA3-202ENST00000314759 IFRD1O00458 451 aaPredicted RBP13.21□□□□□ -0.3
SKA3-202ENST00000314759 NDUFB5O43674 189 aa13.21□□□□□ -0.3
SKA3-202ENST00000314759 KATNA1O75449 491 aa13.21□□□□□ -0.3
SKA3-202ENST00000314759 DNAJB5O75953 348 aa13.21□□□□□ -0.3
SKA3-202ENST00000314759 ALOX5P09917 674 aa13.21□□□□□ -0.3
SKA3-202ENST00000314759 DCTP40126 519 aa13.21□□□□□ -0.3
SKA3-202ENST00000314759 NR4A2P43354 598 aa13.21□□□□□ -0.3
SKA3-202ENST00000314759 IFITM2Q01629 132 aa13.21□□□□□ -0.3
SKA3-202ENST00000314759 PTGR1Q14914 329 aa13.21□□□□□ -0.3
SKA3-202ENST00000314759 CCL15Q16663 113 aa13.21□□□□□ -0.3
SKA3-202ENST00000314759 OR4F6Q8NGB9 312 aa13.21□□□□□ -0.3
SKA3-202ENST00000314759 SLC13A3Q8WWT9 602 aa13.21□□□□□ -0.3
SKA3-202ENST00000314759 BRI3BPQ8WY22 251 aa13.21□□□□□ -0.3
SKA3-202ENST00000314759 RMDN1Q96DB5 314 aa13.21□□□□□ -0.3
SKA3-202ENST00000314759 ITCHQ96J02 903 aa13.21□□□□□ -0.3
SKA3-202ENST00000314759 PDFQ9HBH1 243 aa13.21□□□□□ -0.3
SKA3-202ENST00000314759 AASSQ9UDR5 926 aa13.21□□□□□ -0.3
SKA3-202ENST00000314759 SLCO3A1Q9UIG8 710 aa13.21□□□□□ -0.3
SKA3-202ENST00000314759 C3orf18Q9UK00 162 aa13.21□□□□□ -0.3
SKA3-202ENST00000314759 A0A0D9SEW6 157 aa13.2□□□□□ -0.3
SKA3-202ENST00000314759 FAM47E-STBD1D6RA91 191 aa13.2□□□□□ -0.3
SKA3-202ENST00000314759 OR7A17O14581 309 aa13.2□□□□□ -0.3
SKA3-202ENST00000314759 GABARAPO95166 117 aa13.2□□□□□ -0.3
SKA3-202ENST00000314759 CYP4F3Q08477 520 aa13.2□□□□□ -0.3
SKA3-202ENST00000314759 CDK5R2Q13319 367 aa13.2□□□□□ -0.3
SKA3-202ENST00000314759 UTS2BQ765I0 119 aa13.2□□□□□ -0.3
SKA3-202ENST00000314759 MSRB3Q8IXL7 192 aa13.2□□□□□ -0.3
SKA3-202ENST00000314759 LGI2Q8N0V4 545 aa13.2□□□□□ -0.3
SKA3-202ENST00000314759 KLHDC9Q8NEP7 349 aa13.2□□□□□ -0.3
SKA3-202ENST00000314759 OR7A2PQ8NGA2 310 aa13.2□□□□□ -0.3
SKA3-202ENST00000314759 GPR152Q8TDT2 470 aa13.2□□□□□ -0.3
SKA3-202ENST00000314759 CCDC97Q96F63 343 aaPredicted RBP13.2□□□□□ -0.3
SKA3-202ENST00000314759 SUSD3Q96L08 255 aa13.2□□□□□ -0.3
SKA3-202ENST00000314759 KATNAL1Q9BW62 490 aa13.2□□□□□ -0.3
SKA3-202ENST00000314759 SLC25A37Q9NYZ2 338 aa13.2□□□□□ -0.3
SKA3-202ENST00000314759 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.2□□□□□ -0.3
SKA3-202ENST00000314759 KLHL3Q9UH77 587 aa13.2□□□□□ -0.3
SKA3-202ENST00000314759 TMEFF2Q9UIK5 374 aaPredicted RBP13.2□□□□□ -0.3
SKA3-202ENST00000314759 U3KQV3 271 aa13.2□□□□□ -0.3
SKA3-202ENST00000314759 CXCR6O00574 342 aa13.2□□□□□ -0.3
SKA3-202ENST00000314759 GPR182O15218 404 aa13.2□□□□□ -0.3
SKA3-202ENST00000314759 MGEA5O60502 916 aa13.2□□□□□ -0.3
SKA3-202ENST00000314759 PFKLP17858 780 aa13.2□□□□□ -0.3
SKA3-202ENST00000314759 GRK4P32298 578 aa13.2□□□□□ -0.3
SKA3-202ENST00000314759 TGFBR1P36897 503 aa13.2□□□□□ -0.3
SKA3-202ENST00000314759 RGRP47804 291 aa13.2□□□□□ -0.3
SKA3-202ENST00000314759 PURAQ00577 322 aaKnown RBP13.2□□□□□ -0.3
SKA3-202ENST00000314759 DCP2Q8IU60 420 aaKnown RBP13.2□□□□□ -0.3
SKA3-202ENST00000314759 CLIP4Q8N3C7 705 aa13.2□□□□□ -0.3
SKA3-202ENST00000314759 PIK3C3Q8NEB9 887 aa13.2□□□□□ -0.3
SKA3-202ENST00000314759 HTRA1Q92743 480 aa13.2□□□□□ -0.3
SKA3-202ENST00000314759 GLMNQ92990 594 aa13.2□□□□□ -0.3
SKA3-202ENST00000314759 SARS2Q9NP81 518 aaKnown RBP13.2□□□□□ -0.3
SKA3-202ENST00000314759 ATP11BQ9Y2G3 1177 aa13.2□□□□□ -0.3
SKA3-202ENST00000314759 FNDC3AQ9Y2H6 1198 aaKnown RBP13.2□□□□□ -0.3
SKA3-202ENST00000314759 CCL27Q9Y4X3 112 aa13.2□□□□□ -0.3
SKA3-202ENST00000314759 ELOVL7A1L3X0 281 aa13.19□□□□□ -0.3
SKA3-202ENST00000314759 MOXD2PA6NHM9 499 aa13.19□□□□□ -0.3
SKA3-202ENST00000314759 ZBBXA8MT70 800 aa13.19□□□□□ -0.3
SKA3-202ENST00000314759 IQCF5A8MTL0 148 aa13.19□□□□□ -0.3
SKA3-202ENST00000314759 SLC2A4P14672 509 aa13.19□□□□□ -0.3
SKA3-202ENST00000314759 RYKP34925 604 aa13.19□□□□□ -0.3
SKA3-202ENST00000314759 YBEYP58557 167 aaPredicted RBP13.19□□□□□ -0.3
SKA3-202ENST00000314759 TUSC3Q13454 348 aa13.19□□□□□ -0.3
SKA3-202ENST00000314759 RAPSNQ13702 412 aa13.19□□□□□ -0.3
SKA3-202ENST00000314759 TAF1AQ15573 450 aaPredicted RBP13.19□□□□□ -0.3
SKA3-202ENST00000314759 FAM174BQ3ZCQ3 159 aa13.19□□□□□ -0.3
SKA3-202ENST00000314759 ALG1LQ6GMV1 187 aa13.19□□□□□ -0.3
SKA3-202ENST00000314759 DNAJC14Q6Y2X3 702 aaPredicted RBP13.19□□□□□ -0.3
SKA3-202ENST00000314759 GOLGA7Q7Z5G4 137 aa13.19□□□□□ -0.3
SKA3-202ENST00000314759 EID3Q8N140 333 aa13.19□□□□□ -0.3
SKA3-202ENST00000314759 FAM162AQ96A26 154 aa13.19□□□□□ -0.3
SKA3-202ENST00000314759 BTBD2Q9BX70 525 aa13.19□□□□□ -0.3
SKA3-202ENST00000314759 ZMYM5Q9UJ78 669 aa13.19□□□□□ -0.3
SKA3-202ENST00000314759 TSR3Q9UJK0 312 aaKnown RBP13.19□□□□□ -0.3
SKA3-202ENST00000314759 ZNF229Q9UJW7 825 aa13.19□□□□□ -0.3
SKA3-202ENST00000314759 INVSQ9Y283 1065 aa13.19□□□□□ -0.3
SKA3-202ENST00000314759 DOCK3Q8IZD9 2030 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms