RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 CALRP27797 417 aaKnown RBP19.68■□□□□ 0.74
VPS53-201ENST00000291074 KRT80Q6KB66 452 aa19.68■□□□□ 0.74
VPS53-201ENST00000291074 DPY19L3Q6ZPD9 716 aa19.68■□□□□ 0.74
VPS53-201ENST00000291074 TMEM25Q86YD3 366 aa19.68■□□□□ 0.74
VPS53-201ENST00000291074 CBARPQ8N350 705 aaPredicted RBP19.68■□□□□ 0.74
VPS53-201ENST00000291074 MTFMTQ96DP5 389 aaKnown RBP19.68■□□□□ 0.74
VPS53-201ENST00000291074 SCRN2Q96FV2 425 aa19.68■□□□□ 0.74
VPS53-201ENST00000291074 SUV39H2Q9H5I1 410 aa19.68■□□□□ 0.74
VPS53-201ENST00000291074 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP19.68■□□□□ 0.74
VPS53-201ENST00000291074 VARSP26640 1264 aaKnown RBP19.67■□□□□ 0.74
VPS53-201ENST00000291074 CCR7P32248 378 aa19.67■□□□□ 0.74
VPS53-201ENST00000291074 SPATS1Q496A3 300 aa19.67■□□□□ 0.74
VPS53-201ENST00000291074 PYCR3Q53H96 274 aa19.67■□□□□ 0.74
VPS53-201ENST00000291074 FAM47BQ8NA70 645 aa19.67■□□□□ 0.74
VPS53-201ENST00000291074 CHST14Q8NCH0 376 aa19.67■□□□□ 0.74
VPS53-201ENST00000291074 BIRC7Q96CA5 298 aa19.67■□□□□ 0.74
VPS53-201ENST00000291074 CENPNQ96H22 339 aaPredicted RBP19.67■□□□□ 0.74
VPS53-201ENST00000291074 LYSMD1Q96S90 227 aa19.67■□□□□ 0.74
VPS53-201ENST00000291074 ANKRD60Q9BZ19 345 aa19.67■□□□□ 0.74
VPS53-201ENST00000291074 EPB41L1Q9H4G0 881 aa19.67■□□□□ 0.74
VPS53-201ENST00000291074 OLAHQ9NV23 265 aa19.67■□□□□ 0.74
VPS53-201ENST00000291074 ANAPC2Q9UJX6 822 aa19.67■□□□□ 0.74
VPS53-201ENST00000291074 ZNF490Q9ULM2 529 aaPredicted RBP19.67■□□□□ 0.74
VPS53-201ENST00000291074 ZNF510Q9Y2H8 683 aa19.67■□□□□ 0.74
VPS53-201ENST00000291074 AGAP14A8MT82 685 aa19.67■□□□□ 0.74
VPS53-201ENST00000291074 GGT5P36269 586 aa19.67■□□□□ 0.74
VPS53-201ENST00000291074 NSG1P42857 185 aa19.67■□□□□ 0.74
VPS53-201ENST00000291074 CRY1Q16526 586 aa19.67■□□□□ 0.74
VPS53-201ENST00000291074 INTS11Q5TA45 600 aaKnown RBP19.67■□□□□ 0.74
VPS53-201ENST00000291074 GOLM1Q8NBJ4 401 aa19.67■□□□□ 0.74
VPS53-201ENST00000291074 TFAP2CQ92754 450 aa19.67■□□□□ 0.74
VPS53-201ENST00000291074 ECHDC3Q96DC8 303 aa19.67■□□□□ 0.74
VPS53-201ENST00000291074 PPP3R2Q96LZ3 170 aa19.67■□□□□ 0.74
VPS53-201ENST00000291074 CGREF1Q99674 301 aa19.67■□□□□ 0.74
VPS53-201ENST00000291074 ZDHHC3Q9NYG2 299 aa19.67■□□□□ 0.74
VPS53-201ENST00000291074 RNF103-CHMP3A0A140T963 221 aa19.66■□□□□ 0.74
VPS53-201ENST00000291074 CCDC160A6NGH7 325 aa19.66■□□□□ 0.74
VPS53-201ENST00000291074 DFNA5O60443 496 aa19.66■□□□□ 0.74
VPS53-201ENST00000291074 C1SP09871 688 aa19.66■□□□□ 0.74
VPS53-201ENST00000291074 JAK1P23458 1154 aa19.66■□□□□ 0.74
VPS53-201ENST00000291074 HTR1EP28566 365 aa19.66■□□□□ 0.74
VPS53-201ENST00000291074 KIAA0040Q15053 153 aa19.66■□□□□ 0.74
VPS53-201ENST00000291074 DNAJC14Q6Y2X3 702 aaPredicted RBP19.66■□□□□ 0.74
VPS53-201ENST00000291074 Q6ZVU0 165 aa19.66■□□□□ 0.74
VPS53-201ENST00000291074 USP45Q70EL2 814 aa19.66■□□□□ 0.74
VPS53-201ENST00000291074 CLHC1Q8NHS4 586 aa19.66■□□□□ 0.74
VPS53-201ENST00000291074 COPS8Q99627 209 aa19.66■□□□□ 0.74
VPS53-201ENST00000291074 MUC13Q9H3R2 512 aa19.66■□□□□ 0.74
VPS53-201ENST00000291074 ACOX3O15254 700 aa19.66■□□□□ 0.74
VPS53-201ENST00000291074 RFC2P35250 354 aa19.66■□□□□ 0.74
VPS53-201ENST00000291074 ATP6AP1Q15904 470 aa19.66■□□□□ 0.74
VPS53-201ENST00000291074 TTLL9Q3SXZ7 439 aa19.66■□□□□ 0.74
VPS53-201ENST00000291074 DTWD1Q8N5C7 304 aa19.66■□□□□ 0.74
VPS53-201ENST00000291074 KRTCAP2Q8N6L1 136 aa19.66■□□□□ 0.74
VPS53-201ENST00000291074 TSPAN14Q8NG11 270 aa19.66■□□□□ 0.74
VPS53-201ENST00000291074 UBTD2Q8WUN7 234 aa19.66■□□□□ 0.74
VPS53-201ENST00000291074 ULK4Q96C45 1275 aa19.66■□□□□ 0.74
VPS53-201ENST00000291074 TCEAL4Q96EI5 215 aa19.66■□□□□ 0.74
VPS53-201ENST00000291074 VAPAQ9P0L0 249 aa19.66■□□□□ 0.74
VPS53-201ENST00000291074 TMPRSS11EQ9UL52 423 aa19.66■□□□□ 0.74
VPS53-201ENST00000291074 HS3ST2Q9Y278 367 aa19.66■□□□□ 0.74
VPS53-201ENST00000291074 NEDD8-MDP1E9PL57 170 aa19.65■□□□□ 0.74
VPS53-201ENST00000291074 EI24O14681 340 aa19.65■□□□□ 0.74
VPS53-201ENST00000291074 RGS14O43566 566 aa19.65■□□□□ 0.74
VPS53-201ENST00000291074 ULK1O75385 1050 aa19.65■□□□□ 0.74
VPS53-201ENST00000291074 CLTBP09497 229 aa19.65■□□□□ 0.74
VPS53-201ENST00000291074 CTSAP10619 480 aa19.65■□□□□ 0.74
VPS53-201ENST00000291074 EPB42P16452 691 aa19.65■□□□□ 0.74
VPS53-201ENST00000291074 EPORP19235 508 aa19.65■□□□□ 0.74
VPS53-201ENST00000291074 HSPA14Q0VDF9 509 aa19.65■□□□□ 0.74
VPS53-201ENST00000291074 ZXDCQ2QGD7 858 aaPredicted RBP19.65■□□□□ 0.74
VPS53-201ENST00000291074 FAM174BQ3ZCQ3 159 aa19.65■□□□□ 0.74
VPS53-201ENST00000291074 GLYATQ6IB77 296 aa19.65■□□□□ 0.74
VPS53-201ENST00000291074 RGL4Q8IZJ4 473 aa19.65■□□□□ 0.74
VPS53-201ENST00000291074 LIX1Q8N485 282 aa19.65■□□□□ 0.74
VPS53-201ENST00000291074 ZFAND2BQ8WV99 257 aa19.65■□□□□ 0.74
VPS53-201ENST00000291074 SKA2Q8WVK7 121 aaPredicted RBP19.65■□□□□ 0.74
VPS53-201ENST00000291074 RBM38Q9H0Z9 239 aaKnown RBP19.65■□□□□ 0.74
VPS53-201ENST00000291074 ARL15Q9NXU5 204 aa19.65■□□□□ 0.74
VPS53-201ENST00000291074 KCTD5Q9NXV2 234 aa19.65■□□□□ 0.74
VPS53-201ENST00000291074 B4GALT6Q9UBX8 382 aa19.65■□□□□ 0.74
VPS53-201ENST00000291074 ARNTLO00327 626 aa19.65■□□□□ 0.74
VPS53-201ENST00000291074 MANBAO00462 879 aa19.65■□□□□ 0.74
VPS53-201ENST00000291074 MTX2O75431 263 aa19.65■□□□□ 0.74
VPS53-201ENST00000291074 STK16O75716 305 aa19.65■□□□□ 0.74
VPS53-201ENST00000291074 H6PDO95479 791 aa19.65■□□□□ 0.74
VPS53-201ENST00000291074 CLIC3O95833 236 aa19.65■□□□□ 0.74
VPS53-201ENST00000291074 CPSF6Q16630 551 aaKnown RBP eCLIP19.65■□□□□ 0.74
VPS53-201ENST00000291074 LILRA6Q6PI73 481 aa19.65■□□□□ 0.74
VPS53-201ENST00000291074 SUSD1Q6UWL2 747 aa19.65■□□□□ 0.74
VPS53-201ENST00000291074 OTOP2Q7RTS6 562 aa19.65■□□□□ 0.74
VPS53-201ENST00000291074 METTL3Q86U44 580 aaKnown RBP19.65■□□□□ 0.74
VPS53-201ENST00000291074 VRK3Q8IV63 474 aa19.65■□□□□ 0.74
VPS53-201ENST00000291074 MFSD2AQ8NA29 543 aa19.65■□□□□ 0.74
VPS53-201ENST00000291074 KREMEN2Q8NCW0 462 aa19.65■□□□□ 0.74
VPS53-201ENST00000291074 ZFP28Q8NHY6 868 aa19.65■□□□□ 0.74
VPS53-201ENST00000291074 DGCR14Q96DF8 476 aaKnown RBP19.65■□□□□ 0.74
VPS53-201ENST00000291074 PNPLA3Q9NST1 481 aa19.65■□□□□ 0.74
VPS53-201ENST00000291074 PDE10AQ9Y233 779 aa19.65■□□□□ 0.74
VPS53-201ENST00000291074 COMMD3-BMI1R4GMX3 469 aa19.65■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms