RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 TRPC5OSA6NMA1 111 aa13.8□□□□□ -0.2
SS18-201ENST00000269137 FAM170BA6NMN3 283 aa13.8□□□□□ -0.2
SS18-201ENST00000269137 SLC31A1O15431 190 aa13.8□□□□□ -0.2
SS18-201ENST00000269137 CCDC22O60826 627 aa13.8□□□□□ -0.2
SS18-201ENST00000269137 DIAPH2O60879 1101 aa13.8□□□□□ -0.2
SS18-201ENST00000269137 GUCA1CO95843 209 aa13.8□□□□□ -0.2
SS18-201ENST00000269137 PBLDP30039 288 aaPredicted RBP13.8□□□□□ -0.2
SS18-201ENST00000269137 MAT2AP31153 395 aaKnown RBP13.8□□□□□ -0.2
SS18-201ENST00000269137 MAGEA9P43362 315 aa13.8□□□□□ -0.2
SS18-201ENST00000269137 PREPP48147 710 aa13.8□□□□□ -0.2
SS18-201ENST00000269137 HNMTP50135 292 aa13.8□□□□□ -0.2
SS18-201ENST00000269137 RPA4Q13156 261 aa13.8□□□□□ -0.2
SS18-201ENST00000269137 UBXN2BQ14CS0 331 aa13.8□□□□□ -0.2
SS18-201ENST00000269137 FBXO48Q5FWF7 155 aa13.8□□□□□ -0.2
SS18-201ENST00000269137 VWA5B1Q5TIE3 1220 aa13.8□□□□□ -0.2
SS18-201ENST00000269137 DOK6Q6PKX4 331 aa13.8□□□□□ -0.2
SS18-201ENST00000269137 CRTC3Q6UUV7 619 aa13.8□□□□□ -0.2
SS18-201ENST00000269137 CLNKQ7Z7G1 428 aa13.8□□□□□ -0.2
SS18-201ENST00000269137 AMZ2Q86W34 360 aa13.8□□□□□ -0.2
SS18-201ENST00000269137 C10orf67Q8IYJ2 551 aa13.8□□□□□ -0.2
SS18-201ENST00000269137 UBALD2Q8IYN6 164 aa13.8□□□□□ -0.2
SS18-201ENST00000269137 CLYBLQ8N0X4 340 aa13.8□□□□□ -0.2
SS18-201ENST00000269137 LILRA3Q8N6C8 439 aaPredicted RBP13.8□□□□□ -0.2
SS18-201ENST00000269137 FLCNQ8NFG4 579 aa13.8□□□□□ -0.2
SS18-201ENST00000269137 OR56A4Q8NGH8 313 aa13.8□□□□□ -0.2
SS18-201ENST00000269137 AGAP11Q8TF27 550 aa13.8□□□□□ -0.2
SS18-201ENST00000269137 HGH1Q9BTY7 390 aa13.8□□□□□ -0.2
SS18-201ENST00000269137 CD244Q9BZW8 370 aa13.8□□□□□ -0.2
SS18-201ENST00000269137 RMI1Q9H9A7 625 aa13.8□□□□□ -0.2
SS18-201ENST00000269137 ZBTB26Q9HCK0 441 aa13.8□□□□□ -0.2
SS18-201ENST00000269137 MID1IP1Q9NPA3 183 aa13.8□□□□□ -0.2
SS18-201ENST00000269137 ARL15Q9NXU5 204 aa13.8□□□□□ -0.2
SS18-201ENST00000269137 ZFP69BQ9UJL9 534 aa13.8□□□□□ -0.2
SS18-201ENST00000269137 ASB1Q9Y576 335 aa13.8□□□□□ -0.2
SS18-201ENST00000269137 TMEM233B4DJY2 109 aa13.79□□□□□ -0.2
SS18-201ENST00000269137 H3BM21 787 aa13.79□□□□□ -0.2
SS18-201ENST00000269137 PPP6CO00743 305 aa13.79□□□□□ -0.2
SS18-201ENST00000269137 LATO43561 262 aa13.79□□□□□ -0.2
SS18-201ENST00000269137 UBOX5O94941 541 aa13.79□□□□□ -0.2
SS18-201ENST00000269137 SEMA4FO95754 770 aa13.79□□□□□ -0.2
SS18-201ENST00000269137 SERPINA6P08185 405 aa13.79□□□□□ -0.2
SS18-201ENST00000269137 TSPAN8P19075 237 aa13.79□□□□□ -0.2
SS18-201ENST00000269137 PDHA2P29803 388 aa13.79□□□□□ -0.2
SS18-201ENST00000269137 INHBCP55103 352 aa13.79□□□□□ -0.2
SS18-201ENST00000269137 ABRQ12979 859 aa13.79□□□□□ -0.2
SS18-201ENST00000269137 METTL21CQ5VZV1 264 aa13.79□□□□□ -0.2
SS18-201ENST00000269137 ALYREFQ86V81 257 aaKnown RBP13.79□□□□□ -0.2
SS18-201ENST00000269137 PGBD3Q8N328 593 aa13.79□□□□□ -0.2
SS18-201ENST00000269137 FBXO15Q8NCQ5 510 aaPredicted RBP13.79□□□□□ -0.2
SS18-201ENST00000269137 ESAMQ96AP7 390 aa13.79□□□□□ -0.2
SS18-201ENST00000269137 FOPNLQ96NB1 174 aa13.79□□□□□ -0.2
SS18-201ENST00000269137 ZNF382Q96SR6 550 aa13.79□□□□□ -0.2
SS18-201ENST00000269137 TMEM79Q9BSE2 394 aa13.79□□□□□ -0.2
SS18-201ENST00000269137 APOOQ9BUR5 198 aa13.79□□□□□ -0.2
SS18-201ENST00000269137 NUF2Q9BZD4 464 aa13.79□□□□□ -0.2
SS18-201ENST00000269137 SEMA4BQ9NPR2 832 aaPredicted RBP13.79□□□□□ -0.2
SS18-201ENST00000269137 WWOXQ9NZC7 414 aa13.79□□□□□ -0.2
SS18-201ENST00000269137 FAM8A1Q9UBU6 413 aa13.79□□□□□ -0.2
SS18-201ENST00000269137 SLC17A4Q9Y2C5 497 aa13.79□□□□□ -0.2
SS18-201ENST00000269137 PCYT1BQ9Y5K3 369 aaPredicted RBP13.79□□□□□ -0.2
SS18-201ENST00000269137 PABPN1LA6NDY0 278 aaKnown RBP13.78□□□□□ -0.2
SS18-201ENST00000269137 FCHO1O14526 889 aa13.78□□□□□ -0.2
SS18-201ENST00000269137 HGSO14964 777 aaPredicted RBP13.78□□□□□ -0.2
SS18-201ENST00000269137 AZIN1O14977 448 aa13.78□□□□□ -0.2
SS18-201ENST00000269137 KMOO15229 486 aa13.78□□□□□ -0.2
SS18-201ENST00000269137 ESRRBO95718 433 aa13.78□□□□□ -0.2
SS18-201ENST00000269137 CATP04040 527 aaKnown RBP13.78□□□□□ -0.2
SS18-201ENST00000269137 OXTRP30559 389 aa13.78□□□□□ -0.2
SS18-201ENST00000269137 HSPA7P48741 367 aa13.78□□□□□ -0.2
SS18-201ENST00000269137 PKNOX1P55347 436 aa13.78□□□□□ -0.2
SS18-201ENST00000269137 BNIP1Q12981 228 aa13.78□□□□□ -0.2
SS18-201ENST00000269137 C18orf21Q32NC0 220 aaPredicted RBP13.78□□□□□ -0.2
SS18-201ENST00000269137 UGT3A2Q3SY77 523 aa13.78□□□□□ -0.2
SS18-201ENST00000269137 SLC9B1Q4ZJI4 515 aa13.78□□□□□ -0.2
SS18-201ENST00000269137 SIX5Q8N196 739 aa13.78□□□□□ -0.2
SS18-201ENST00000269137 TSTD1Q8NFU3 115 aa13.78□□□□□ -0.2
SS18-201ENST00000269137 MAELQ96JY0 434 aaKnown RBP13.78□□□□□ -0.2
SS18-201ENST00000269137 CCDC28BQ9BUN5 200 aa13.78□□□□□ -0.2
SS18-201ENST00000269137 NMUR2Q9GZQ4 415 aa13.78□□□□□ -0.2
SS18-201ENST00000269137 MEAF6Q9HAF1 191 aa13.78□□□□□ -0.2
SS18-201ENST00000269137 TCF7L2Q9NQB0 619 aa13.78□□□□□ -0.2
SS18-201ENST00000269137 C2orf42Q9NWW7 574 aa13.78□□□□□ -0.2
SS18-201ENST00000269137 STK38LQ9Y2H1 464 aa13.78□□□□□ -0.2
SS18-201ENST00000269137 ZFC3H1O60293 1989 aaKnown RBP13.78□□□□□ -0.2
SS18-201ENST00000269137 ARHGEF33A8MVX0 844 aa13.78□□□□□ -0.2
SS18-201ENST00000269137 K7EPI3 171 aa13.78□□□□□ -0.2
SS18-201ENST00000269137 CACNB4O00305 520 aaPredicted RBP13.78□□□□□ -0.2
SS18-201ENST00000269137 STK16O75716 305 aa13.78□□□□□ -0.2
SS18-201ENST00000269137 CEACAM5P06731 702 aa13.78□□□□□ -0.2
SS18-201ENST00000269137 HNRNPA2B1P22626 353 aaKnown RBP13.78□□□□□ -0.2
SS18-201ENST00000269137 MAP4P27816 1152 aaKnown RBP13.78□□□□□ -0.2
SS18-201ENST00000269137 PIK3CGP48736 1102 aa13.78□□□□□ -0.2
SS18-201ENST00000269137 CCR5P51681 352 aa13.78□□□□□ -0.2
SS18-201ENST00000269137 KIAA1024LP59773 190 aa13.78□□□□□ -0.2
SS18-201ENST00000269137 GTF2H2Q13888 395 aa13.78□□□□□ -0.2
SS18-201ENST00000269137 KANK2Q63ZY3 851 aa13.78□□□□□ -0.2
SS18-201ENST00000269137 ANO7Q6IWH7 933 aa13.78□□□□□ -0.2
SS18-201ENST00000269137 GTF2H2CQ6P1K8 395 aa13.78□□□□□ -0.2
SS18-201ENST00000269137 MBOAT1Q6ZNC8 495 aa13.78□□□□□ -0.2
SS18-201ENST00000269137 GPRIN3Q6ZVF9 776 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms