RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 GSTA1P08263 222 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 FAM86B2P0C5J1 330 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 EIF1AXP47813 144 aaKnown RBP3.53□□□□□ -1.84
SCN1A-221ENST00000641996 BMXP51813 675 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 PRMT2P55345 433 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 KCNC4Q03721 635 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 NPTX1Q15818 432 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 FAM83EQ2M2I3 478 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 PPM1LQ5SGD2 360 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 ARMC12Q5T9G4 340 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 PLCXD3Q63HM9 321 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 KLHDC10Q6PID8 442 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 CLEC9AQ6UXN8 241 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 PGAP1Q75T13 922 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 FAM122BQ7Z309 247 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 CRLF3Q8IUI8 442 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 FAM86B1Q8N7N1 296 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 NDNFQ8TB73 568 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 ZNF48Q96MX3 618 aaPredicted RBP3.53□□□□□ -1.84
SCN1A-221ENST00000641996 METTL22Q9BUU2 404 aaPredicted RBP3.53□□□□□ -1.84
SCN1A-221ENST00000641996 SPATA9Q9BWV2 254 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 SAP130Q9H0E3 1048 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 ALG2Q9H553 416 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 SLC22A11Q9NSA0 550 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 COPZ2Q9P299 210 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 PLAGL2Q9UPG8 496 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 UTYO14607 1347 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 J3QRK9 145 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 SLC28A2O43868 658 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 RAD1O60671 282 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 MAFO75444 373 aaPredicted RBP3.53□□□□□ -1.84
SCN1A-221ENST00000641996 CBR3O75828 277 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 ZNF35P13682 527 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 HSD3B1P14060 373 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 EFNA1P20827 205 aaPredicted RBP3.53□□□□□ -1.84
SCN1A-221ENST00000641996 NPY4RP50391 375 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 MAP4K2Q12851 820 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 MAMLD1Q13495 774 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 EFHC1Q5JVL4 640 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 PRAMEF19Q5SWL8 479 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 ACAD10Q6JQN1 1059 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 LRRC74BQ6ZQY2 392 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 RIPOR1Q6ZS17 1223 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 C15orf52Q6ZUT6 534 aaKnown RBP3.53□□□□□ -1.84
SCN1A-221ENST00000641996 REXO1L1PQ8IX06 675 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 ACTRT1Q8TDG2 376 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 TMEM40Q8WWA1 233 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 FBXL8Q96CD0 374 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 TEFMQ96QE5 360 aaKnown RBP3.53□□□□□ -1.84
SCN1A-221ENST00000641996 PSAT1Q9Y617 370 aa3.53□□□□□ -1.84
SCN1A-221ENST00000641996 FOXE1O00358 373 aaPredicted RBP3.53□□□□□ -1.85
SCN1A-221ENST00000641996 SLC16A4O15374 487 aa3.53□□□□□ -1.85
SCN1A-221ENST00000641996 ANGPTL1O95841 491 aa3.53□□□□□ -1.85
SCN1A-221ENST00000641996 NCK1P16333 377 aa3.53□□□□□ -1.85
SCN1A-221ENST00000641996 FOXM1Q08050 763 aa3.53□□□□□ -1.85
SCN1A-221ENST00000641996 IL24Q13007 206 aa3.53□□□□□ -1.85
SCN1A-221ENST00000641996 KCNJ8Q15842 424 aa3.53□□□□□ -1.85
SCN1A-221ENST00000641996 TPGS2Q68CL5 300 aa3.53□□□□□ -1.85
SCN1A-221ENST00000641996 C5orf46Q6UWT4 87 aa3.53□□□□□ -1.85
SCN1A-221ENST00000641996 NRMQ8IXM6 262 aa3.53□□□□□ -1.85
SCN1A-221ENST00000641996 METTL25Q8N6Q8 603 aa3.53□□□□□ -1.85
SCN1A-221ENST00000641996 DPF2Q92785 391 aa3.53□□□□□ -1.85
SCN1A-221ENST00000641996 FOXRED1Q96CU9 486 aaPredicted RBP3.53□□□□□ -1.85
SCN1A-221ENST00000641996 KIF12Q96FN5 646 aa3.53□□□□□ -1.85
SCN1A-221ENST00000641996 C16orf58Q96GQ5 468 aa3.53□□□□□ -1.85
SCN1A-221ENST00000641996 PAGE5Q96GU1 130 aa3.53□□□□□ -1.85
SCN1A-221ENST00000641996 MED10Q9BTT4 135 aa3.53□□□□□ -1.85
SCN1A-221ENST00000641996 RAB11FIP5Q9BXF6 653 aa3.53□□□□□ -1.85
SCN1A-221ENST00000641996 CRISPLD2Q9H0B8 497 aa3.53□□□□□ -1.85
SCN1A-221ENST00000641996 C11orf49Q9H6J7 331 aa3.53□□□□□ -1.85
SCN1A-221ENST00000641996 HSF4Q9ULV5 492 aa3.53□□□□□ -1.85
SCN1A-221ENST00000641996 ANKUB1A6NFN9 424 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 SLC30A4O14863 429 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 CDH16O75309 829 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 FAM107AO95990 144 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 IFNA21P01568 189 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 OXTRP30559 389 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 GP5P40197 560 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 CHN2P52757 468 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 ETF1P62495 437 aaKnown RBP3.52□□□□□ -1.85
SCN1A-221ENST00000641996 MVKQ03426 396 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 GAD2Q05329 585 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 PPP1R8Q12972 351 aaKnown RBP3.52□□□□□ -1.85
SCN1A-221ENST00000641996 ALCAMQ13740 583 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 CAMK1Q14012 370 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 ZNF385CQ66K41 422 aaPredicted RBP3.52□□□□□ -1.85
SCN1A-221ENST00000641996 MTSS1LQ765P7 747 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 MOGAT3Q86VF5 341 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 ZFPM1Q8IX07 1006 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 MB21D2Q8IYB1 491 aaPredicted RBP3.52□□□□□ -1.85
SCN1A-221ENST00000641996 FBXW8Q8N3Y1 598 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 ZNF781Q8N8C0 355 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 NLGN4YQ8NFZ3 816 aaPredicted RBP3.52□□□□□ -1.85
SCN1A-221ENST00000641996 PIWIL2Q8TC59 973 aaKnown RBP3.52□□□□□ -1.85
SCN1A-221ENST00000641996 TNFAIP8L1Q8WVP5 186 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 POLR1EQ9GZS1 481 aaKnown RBP3.52□□□□□ -1.85
SCN1A-221ENST00000641996 SEC14L3Q9UDX4 400 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 SLC22A2O15244 555 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 HBP1O60381 514 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 CCNB1P14635 433 aa3.52□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms