RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 GULP1Q9UBP9 304 aa16.53■□□□□ 0.24
CLN3-252ENST00000636907 FZD4Q9ULV1 537 aa16.53■□□□□ 0.24
CLN3-252ENST00000636907 TNPO3Q9Y5L0 923 aaKnown RBP16.53■□□□□ 0.24
CLN3-252ENST00000636907 TCRBV21S2A2A0A5A6 115 aa16.52■□□□□ 0.23
CLN3-252ENST00000636907 TRPC5OSA6NMA1 111 aa16.52■□□□□ 0.23
CLN3-252ENST00000636907 LOC730098B7Z3J9 87 aa16.52■□□□□ 0.23
CLN3-252ENST00000636907 E9PBE3 544 aa16.52■□□□□ 0.23
CLN3-252ENST00000636907 GFYI3L273 518 aa16.52■□□□□ 0.23
CLN3-252ENST00000636907 SDHDO14521 159 aa16.52■□□□□ 0.23
CLN3-252ENST00000636907 KLHL41O60662 606 aa16.52■□□□□ 0.23
CLN3-252ENST00000636907 UNC5CO95185 931 aa16.52■□□□□ 0.23
CLN3-252ENST00000636907 FGF4P08620 206 aa16.52■□□□□ 0.23
CLN3-252ENST00000636907 ENO2P09104 434 aaPredicted RBP16.52■□□□□ 0.23
CLN3-252ENST00000636907 HSPA7P48741 367 aa16.52■□□□□ 0.23
CLN3-252ENST00000636907 RPIAP49247 311 aa16.52■□□□□ 0.23
CLN3-252ENST00000636907 SP140Q13342 867 aa16.52■□□□□ 0.23
CLN3-252ENST00000636907 LSM12Q3MHD2 195 aaKnown RBP16.52■□□□□ 0.23
CLN3-252ENST00000636907 SULT1C3Q6IMI6 304 aa16.52■□□□□ 0.23
CLN3-252ENST00000636907 KIAA1324Q6UXG2 1013 aaKnown RBP16.52■□□□□ 0.23
CLN3-252ENST00000636907 USP30Q70CQ3 517 aa16.52■□□□□ 0.23
CLN3-252ENST00000636907 FAM124AQ86V42 546 aa16.52■□□□□ 0.23
CLN3-252ENST00000636907 TREML1Q86YW5 311 aa16.52■□□□□ 0.23
CLN3-252ENST00000636907 ZNF547Q8IVP9 402 aa16.52■□□□□ 0.23
CLN3-252ENST00000636907 KIRREL3Q8IZU9 778 aa16.52■□□□□ 0.23
CLN3-252ENST00000636907 CLYBLQ8N0X4 340 aa16.52■□□□□ 0.23
CLN3-252ENST00000636907 OR56A4Q8NGH8 313 aa16.52■□□□□ 0.23
CLN3-252ENST00000636907 ZNF514Q96K75 400 aaPredicted RBP16.52■□□□□ 0.23
CLN3-252ENST00000636907 KCNA7Q96RP8 456 aa16.52■□□□□ 0.23
CLN3-252ENST00000636907 CCDC106Q9BWC9 280 aa16.52■□□□□ 0.23
CLN3-252ENST00000636907 LGR4Q9BXB1 951 aa16.52■□□□□ 0.23
CLN3-252ENST00000636907 PARVBQ9HBI1 364 aa16.52■□□□□ 0.23
CLN3-252ENST00000636907 TXLNGQ9NUQ3 528 aa16.52■□□□□ 0.23
CLN3-252ENST00000636907 ARL8BQ9NVJ2 186 aa16.52■□□□□ 0.23
CLN3-252ENST00000636907 WWOXQ9NZC7 414 aa16.52■□□□□ 0.23
CLN3-252ENST00000636907 DUSP12Q9UNI6 340 aa16.52■□□□□ 0.23
CLN3-252ENST00000636907 NCKAP1Q9Y2A7 1128 aa16.52■□□□□ 0.23
CLN3-252ENST00000636907 PCYT1BQ9Y5K3 369 aaPredicted RBP16.52■□□□□ 0.23
CLN3-252ENST00000636907 TBC1D3DA0A087WVF3 549 aa16.51■□□□□ 0.23
CLN3-252ENST00000636907 TBC1D3IA0A087WXS9 549 aa16.51■□□□□ 0.23
CLN3-252ENST00000636907 TBC1D3EA0A087X179 549 aa16.51■□□□□ 0.23
CLN3-252ENST00000636907 TBC1D3KA0A087X1G2 549 aa16.51■□□□□ 0.23
CLN3-252ENST00000636907 TBC1D3FA6NER0 549 aaPredicted RBP16.51■□□□□ 0.23
CLN3-252ENST00000636907 CAPN14A8MX76 684 aa16.51■□□□□ 0.23
CLN3-252ENST00000636907 TBC1D3LB9A6J9 549 aa16.51■□□□□ 0.23
CLN3-252ENST00000636907 MAN2B1O00754 1011 aa16.51■□□□□ 0.23
CLN3-252ENST00000636907 AZIN1O14977 448 aa16.51■□□□□ 0.23
CLN3-252ENST00000636907 SLC16A5O15375 505 aa16.51■□□□□ 0.23
CLN3-252ENST00000636907 MLYCDO95822 493 aa16.51■□□□□ 0.23
CLN3-252ENST00000636907 TBC1D3HP0C7X1 549 aa16.51■□□□□ 0.23
CLN3-252ENST00000636907 ACADMP11310 421 aa16.51■□□□□ 0.23
CLN3-252ENST00000636907 PRDX3P30048 256 aaKnown RBP16.51■□□□□ 0.23
CLN3-252ENST00000636907 FOXA1P55317 472 aa16.51■□□□□ 0.23
CLN3-252ENST00000636907 TFF2Q03403 129 aa16.51■□□□□ 0.23
CLN3-252ENST00000636907 SGCGQ13326 291 aa16.51■□□□□ 0.23
CLN3-252ENST00000636907 INPP5AQ14642 412 aa16.51■□□□□ 0.23
CLN3-252ENST00000636907 KRT72Q14CN4 511 aa16.51■□□□□ 0.23
CLN3-252ENST00000636907 RBBP7Q16576 425 aa16.51■□□□□ 0.23
CLN3-252ENST00000636907 UGT3A2Q3SY77 523 aa16.51■□□□□ 0.23
CLN3-252ENST00000636907 KANK2Q63ZY3 851 aa16.51■□□□□ 0.23
CLN3-252ENST00000636907 TBC1D3GQ6DHY5 549 aa16.51■□□□□ 0.23
CLN3-252ENST00000636907 TBC1D3CQ6IPX1 549 aa16.51■□□□□ 0.23
CLN3-252ENST00000636907 DOK6Q6PKX4 331 aa16.51■□□□□ 0.23
CLN3-252ENST00000636907 CRTC3Q6UUV7 619 aa16.51■□□□□ 0.23
CLN3-252ENST00000636907 ACAD11Q709F0 780 aa16.51■□□□□ 0.23
CLN3-252ENST00000636907 KBTBD6Q86V97 674 aa16.51■□□□□ 0.23
CLN3-252ENST00000636907 HORMAD1Q86X24 394 aa16.51■□□□□ 0.23
CLN3-252ENST00000636907 RASGRP3Q8IV61 690 aa16.51■□□□□ 0.23
CLN3-252ENST00000636907 TBC1D3Q8IZP1 549 aaPredicted RBP16.51■□□□□ 0.23
CLN3-252ENST00000636907 UBTD2Q8WUN7 234 aa16.51■□□□□ 0.23
CLN3-252ENST00000636907 MAELQ96JY0 434 aaKnown RBP16.51■□□□□ 0.23
CLN3-252ENST00000636907 LINC00615Q96LM1 132 aaPredicted RBP16.51■□□□□ 0.23
CLN3-252ENST00000636907 CCDC28BQ9BUN5 200 aa16.51■□□□□ 0.23
CLN3-252ENST00000636907 TEX101Q9BY14 249 aa16.51■□□□□ 0.23
CLN3-252ENST00000636907 SLC17A9Q9BYT1 436 aa16.51■□□□□ 0.23
CLN3-252ENST00000636907 MEAF6Q9HAF1 191 aa16.51■□□□□ 0.23
CLN3-252ENST00000636907 PREBQ9HCU5 417 aa16.51■□□□□ 0.23
CLN3-252ENST00000636907 ZNF225Q9UK10 706 aa16.51■□□□□ 0.23
CLN3-252ENST00000636907 CA14Q9ULX7 337 aa16.51■□□□□ 0.23
CLN3-252ENST00000636907 GPR34Q9UPC5 381 aa16.51■□□□□ 0.23
CLN3-252ENST00000636907 MATN4O95460 622 aa16.5■□□□□ 0.23
CLN3-252ENST00000636907 ANXA5P08758 320 aa16.5■□□□□ 0.23
CLN3-252ENST00000636907 GSTM1P09488 218 aa16.5■□□□□ 0.23
CLN3-252ENST00000636907 CYP2A7P20853 494 aa16.5■□□□□ 0.23
CLN3-252ENST00000636907 TEAD1P28347 426 aa16.5■□□□□ 0.23
CLN3-252ENST00000636907 PDHA2P29803 388 aa16.5■□□□□ 0.23
CLN3-252ENST00000636907 INHBCP55103 352 aa16.5■□□□□ 0.23
CLN3-252ENST00000636907 PPP2CBP62714 309 aa16.5■□□□□ 0.23
CLN3-252ENST00000636907 PPP2CAP67775 309 aa16.5■□□□□ 0.23
CLN3-252ENST00000636907 CDKL1Q00532 357 aa16.5■□□□□ 0.23
CLN3-252ENST00000636907 GSTM4Q03013 218 aa16.5■□□□□ 0.23
CLN3-252ENST00000636907 ABRQ12979 859 aa16.5■□□□□ 0.23
CLN3-252ENST00000636907 GTF2H2Q13888 395 aa16.5■□□□□ 0.23
CLN3-252ENST00000636907 GTF2H2CQ6P1K8 395 aa16.5■□□□□ 0.23
CLN3-252ENST00000636907 XKR5Q6UX68 686 aa16.5■□□□□ 0.23
CLN3-252ENST00000636907 Q6ZS52 159 aa16.5■□□□□ 0.23
CLN3-252ENST00000636907 GOLGA7Q7Z5G4 137 aa16.5■□□□□ 0.23
CLN3-252ENST00000636907 SYVN1Q86TM6 617 aa16.5■□□□□ 0.23
CLN3-252ENST00000636907 CFAP206Q8IYR0 622 aa16.5■□□□□ 0.23
CLN3-252ENST00000636907 SLC22A15Q8IZD6 547 aa16.5■□□□□ 0.23
CLN3-252ENST00000636907 DEFB123Q8N688 67 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms