RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 ZNF195O14628 629 aa13.97□□□□□ -0.17
USP39-220ENST00000613444 LIN7AO14910 233 aaPredicted RBP13.97□□□□□ -0.17
USP39-220ENST00000613444 HSPA4LO95757 839 aa13.97□□□□□ -0.17
USP39-220ENST00000613444 RPS17P08708 135 aaKnown RBP13.97□□□□□ -0.17
USP39-220ENST00000613444 HOXC4P09017 264 aaPredicted RBP13.97□□□□□ -0.17
USP39-220ENST00000613444 HNRNPA2B1P22626 353 aaKnown RBP13.97□□□□□ -0.17
USP39-220ENST00000613444 ARHGAP8P85298 464 aa13.97□□□□□ -0.17
USP39-220ENST00000613444 GALNT1Q10472 559 aaPredicted RBP13.97□□□□□ -0.17
USP39-220ENST00000613444 FAM83HQ6ZRV2 1179 aaPredicted RBP13.97□□□□□ -0.17
USP39-220ENST00000613444 TMEM145Q8NBT3 493 aa13.97□□□□□ -0.17
USP39-220ENST00000613444 RLN3Q8WXF3 142 aa13.97□□□□□ -0.17
USP39-220ENST00000613444 TMEM159Q96B96 161 aa13.97□□□□□ -0.17
USP39-220ENST00000613444 TPSD1Q9BZJ3 242 aa13.97□□□□□ -0.17
USP39-220ENST00000613444 TNFRSF12AQ9NP84 129 aa13.97□□□□□ -0.17
USP39-220ENST00000613444 TM7SF3Q9NS93 570 aa13.97□□□□□ -0.17
USP39-220ENST00000613444 CD274Q9NZQ7 290 aa13.97□□□□□ -0.17
USP39-220ENST00000613444 PTBP2Q9UKA9 531 aaKnown RBP13.97□□□□□ -0.17
USP39-220ENST00000613444 PDE10AQ9Y233 779 aa13.97□□□□□ -0.17
USP39-220ENST00000613444 RAP2CQ9Y3L5 183 aa13.97□□□□□ -0.17
USP39-220ENST00000613444 DNAH14Q0VDD8 3507 aa13.97□□□□□ -0.17
USP39-220ENST00000613444 GON4LQ3T8J9 2241 aa13.97□□□□□ -0.17
USP39-220ENST00000613444 H0Y8X5 98 aa13.96□□□□□ -0.17
USP39-220ENST00000613444 UBFD1O14562 309 aaKnown RBP13.96□□□□□ -0.17
USP39-220ENST00000613444 SUPT7LO94864 414 aa13.96□□□□□ -0.17
USP39-220ENST00000613444 C8GP07360 202 aa13.96□□□□□ -0.17
USP39-220ENST00000613444 TROVE2P10155 538 aaKnown RBP eCLIP13.96□□□□□ -0.17
USP39-220ENST00000613444 KITP10721 976 aa13.96□□□□□ -0.17
USP39-220ENST00000613444 MPSTP25325 297 aa13.96□□□□□ -0.17
USP39-220ENST00000613444 EEF1DP29692 281 aaKnown RBP13.96□□□□□ -0.17
USP39-220ENST00000613444 CD6P30203 668 aa13.96□□□□□ -0.17
USP39-220ENST00000613444 OXTRP30559 389 aa13.96□□□□□ -0.17
USP39-220ENST00000613444 CCR5P51681 352 aa13.96□□□□□ -0.17
USP39-220ENST00000613444 ZXDAP98168 799 aa13.96□□□□□ -0.17
USP39-220ENST00000613444 NFE2L1Q14494 772 aa13.96□□□□□ -0.17
USP39-220ENST00000613444 SYTL3Q4VX76 610 aa13.96□□□□□ -0.17
USP39-220ENST00000613444 CFAP157Q5JU67 520 aa13.96□□□□□ -0.17
USP39-220ENST00000613444 KIAA0895LQ68EN5 471 aa13.96□□□□□ -0.17
USP39-220ENST00000613444 GCNT7Q6ZNI0 430 aa13.96□□□□□ -0.17
USP39-220ENST00000613444 FRA10AC1Q70Z53 315 aa13.96□□□□□ -0.17
USP39-220ENST00000613444 MAVSQ7Z434 540 aa13.96□□□□□ -0.17
USP39-220ENST00000613444 LRRTM4Q86VH4 590 aa13.96□□□□□ -0.17
USP39-220ENST00000613444 CFAP206Q8IYR0 622 aa13.96□□□□□ -0.17
USP39-220ENST00000613444 FAM160A2Q8N612 972 aaPredicted RBP13.96□□□□□ -0.17
USP39-220ENST00000613444 PPP4R1Q8TF05 950 aa13.96□□□□□ -0.17
USP39-220ENST00000613444 SCARF2Q96GP6 870 aaPredicted RBP13.96□□□□□ -0.17
USP39-220ENST00000613444 NSUN5Q96P11 429 aaKnown RBP13.96□□□□□ -0.17
USP39-220ENST00000613444 ZDHHC2Q9UIJ5 367 aa13.96□□□□□ -0.17
USP39-220ENST00000613444 DCTN4Q9UJW0 460 aa13.96□□□□□ -0.17
USP39-220ENST00000613444 ARL2BPQ9Y2Y0 163 aa13.96□□□□□ -0.17
USP39-220ENST00000613444 SIT1Q9Y3P8 196 aa13.96□□□□□ -0.17
USP39-220ENST00000613444 TECTAO75443 2155 aa13.96□□□□□ -0.17
USP39-220ENST00000613444 SLC16A5O15375 505 aa13.96□□□□□ -0.18
USP39-220ENST00000613444 TAPBPO15533 448 aa13.96□□□□□ -0.18
USP39-220ENST00000613444 GRID2O43424 1007 aa13.96□□□□□ -0.18
USP39-220ENST00000613444 ZNF217O75362 1048 aa13.96□□□□□ -0.18
USP39-220ENST00000613444 PSIP1O75475 530 aaKnown RBP13.96□□□□□ -0.18
USP39-220ENST00000613444 APBB3O95704 486 aa13.96□□□□□ -0.18
USP39-220ENST00000613444 DCNP07585 359 aaKnown RBP13.96□□□□□ -0.18
USP39-220ENST00000613444 ALOX15P16050 662 aaPredicted RBP13.96□□□□□ -0.18
USP39-220ENST00000613444 CDH13P55290 713 aa13.96□□□□□ -0.18
USP39-220ENST00000613444 PFN3P60673 137 aa13.96□□□□□ -0.18
USP39-220ENST00000613444 SP140Q13342 867 aa13.96□□□□□ -0.18
USP39-220ENST00000613444 ZXDCQ2QGD7 858 aaPredicted RBP13.96□□□□□ -0.18
USP39-220ENST00000613444 C18orf21Q32NC0 220 aaPredicted RBP13.96□□□□□ -0.18
USP39-220ENST00000613444 PLA2G4EQ3MJ16 856 aa13.96□□□□□ -0.18
USP39-220ENST00000613444 TPRG1LQ5T0D9 272 aa13.96□□□□□ -0.18
USP39-220ENST00000613444 C6orf89Q6UWU4 347 aa13.96□□□□□ -0.18
USP39-220ENST00000613444 UBE2R2Q712K3 238 aaPredicted RBP13.96□□□□□ -0.18
USP39-220ENST00000613444 ANKS4BQ8N8V4 417 aa13.96□□□□□ -0.18
USP39-220ENST00000613444 HM13Q8TCT9 377 aa13.96□□□□□ -0.18
USP39-220ENST00000613444 ESAMQ96AP7 390 aa13.96□□□□□ -0.18
USP39-220ENST00000613444 BIRC7Q96CA5 298 aa13.96□□□□□ -0.18
USP39-220ENST00000613444 RHBDF1Q96CC6 855 aa13.96□□□□□ -0.18
USP39-220ENST00000613444 RMDN2Q96LZ7 410 aa13.96□□□□□ -0.18
USP39-220ENST00000613444 TRMOQ9BU70 441 aa13.96□□□□□ -0.18
USP39-220ENST00000613444 ILKAPQ9H0C8 392 aaPredicted RBP13.96□□□□□ -0.18
USP39-220ENST00000613444 PARVBQ9HBI1 364 aa13.96□□□□□ -0.18
USP39-220ENST00000613444 DLGAP2Q9P1A6 1054 aa13.96□□□□□ -0.18
USP39-220ENST00000613444 DNMT3AQ9Y6K1 912 aaPredicted RBP13.96□□□□□ -0.18
USP39-220ENST00000613444 ABCA7Q8IZY2 2146 aa13.96□□□□□ -0.18
USP39-220ENST00000613444 STK25O00506 426 aa13.95□□□□□ -0.18
USP39-220ENST00000613444 E2F3O00716 465 aa13.95□□□□□ -0.18
USP39-220ENST00000613444 PPP6CO00743 305 aa13.95□□□□□ -0.18
USP39-220ENST00000613444 SNUPNO95149 360 aaKnown RBP13.95□□□□□ -0.18
USP39-220ENST00000613444 GUCA1CO95843 209 aa13.95□□□□□ -0.18
USP39-220ENST00000613444 ENO2P09104 434 aaPredicted RBP13.95□□□□□ -0.18
USP39-220ENST00000613444 VCLP18206 1134 aa13.95□□□□□ -0.18
USP39-220ENST00000613444 PXNP49023 591 aaPredicted RBP13.95□□□□□ -0.18
USP39-220ENST00000613444 RPIAP49247 311 aa13.95□□□□□ -0.18
USP39-220ENST00000613444 KIAA1024LP59773 190 aa13.95□□□□□ -0.18
USP39-220ENST00000613444 PRKAA1Q13131 559 aa13.95□□□□□ -0.18
USP39-220ENST00000613444 PCBP2Q15366 365 aaKnown RBP eCLIP13.95□□□□□ -0.18
USP39-220ENST00000613444 ZSCAN26Q16670 478 aa13.95□□□□□ -0.18
USP39-220ENST00000613444 MBOAT1Q6ZNC8 495 aa13.95□□□□□ -0.18
USP39-220ENST00000613444 RAB44Q7Z6P3 723 aaPredicted RBP13.95□□□□□ -0.18
USP39-220ENST00000613444 AMZ2Q86W34 360 aa13.95□□□□□ -0.18
USP39-220ENST00000613444 ZNF483Q8TF39 744 aaPredicted RBP13.95□□□□□ -0.18
USP39-220ENST00000613444 ORAI3Q9BRQ5 295 aa13.95□□□□□ -0.18
USP39-220ENST00000613444 GPR174Q9BXC1 333 aa13.95□□□□□ -0.18
USP39-220ENST00000613444 SHCBP1LQ9BZQ2 653 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms