RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 NAT9Q9BTE0 207 aa19.04■□□□□ 0.64
SHKBP1-221ENST00000599833 TUBB2BQ9BVA1 445 aa19.04■□□□□ 0.64
SHKBP1-221ENST00000599833 LDHAL6BQ9BYZ2 381 aaPredicted RBP19.04■□□□□ 0.64
SHKBP1-221ENST00000599833 CNTNAP3Q9BZ76 1288 aa19.04■□□□□ 0.64
SHKBP1-221ENST00000599833 NRSN2Q9GZP1 204 aa19.04■□□□□ 0.64
SHKBP1-221ENST00000599833 TWSG1Q9GZX9 223 aa19.04■□□□□ 0.64
SHKBP1-221ENST00000599833 SYNDIG1Q9H7V2 258 aa19.04■□□□□ 0.64
SHKBP1-221ENST00000599833 VPS37BQ9H9H4 285 aa19.04■□□□□ 0.64
SHKBP1-221ENST00000599833 C20orf96Q9NUD7 363 aaPredicted RBP19.04■□□□□ 0.64
SHKBP1-221ENST00000599833 SLC17A6Q9P2U8 582 aa19.04■□□□□ 0.64
SHKBP1-221ENST00000599833 ACACAQ13085 2346 aa19.03■□□□□ 0.64
SHKBP1-221ENST00000599833 KMT2BQ9UMN6 2715 aaPredicted RBP19.03■□□□□ 0.64
SHKBP1-221ENST00000599833 MN1Q10571 1320 aaPredicted RBP19.03■□□□□ 0.64
SHKBP1-221ENST00000599833 NDUFS3O75489 264 aa19.03■□□□□ 0.64
SHKBP1-221ENST00000599833 SLC35G4P0C7Q5 338 aa19.03■□□□□ 0.64
SHKBP1-221ENST00000599833 TPBGLP0DKB5 382 aa19.03■□□□□ 0.64
SHKBP1-221ENST00000599833 ERVK-10P10266 1014 aa19.03■□□□□ 0.64
SHKBP1-221ENST00000599833 THRAP10827 490 aa19.03■□□□□ 0.64
SHKBP1-221ENST00000599833 LIMK2P53671 638 aa19.03■□□□□ 0.64
SHKBP1-221ENST00000599833 ARL4CP56559 192 aa19.03■□□□□ 0.64
SHKBP1-221ENST00000599833 MPP1Q00013 466 aa19.03■□□□□ 0.64
SHKBP1-221ENST00000599833 TIAL1Q01085 375 aaKnown RBP eCLIP19.03■□□□□ 0.64
SHKBP1-221ENST00000599833 BOP1Q14137 746 aaKnown RBP19.03■□□□□ 0.64
SHKBP1-221ENST00000599833 RNF187Q5TA31 235 aaPredicted RBP19.03■□□□□ 0.64
SHKBP1-221ENST00000599833 WDR74Q6RFH5 385 aaPredicted RBP19.03■□□□□ 0.64
SHKBP1-221ENST00000599833 KCNMB4Q86W47 210 aa19.03■□□□□ 0.64
SHKBP1-221ENST00000599833 LMNTD2Q8IXW0 634 aa19.03■□□□□ 0.64
SHKBP1-221ENST00000599833 BBOF1Q8ND07 529 aa19.03■□□□□ 0.64
SHKBP1-221ENST00000599833 OR4D9Q8NGE8 314 aa19.03■□□□□ 0.64
SHKBP1-221ENST00000599833 FBXO25Q8TCJ0 367 aa19.03■□□□□ 0.64
SHKBP1-221ENST00000599833 JPH3Q8WXH2 748 aaPredicted RBP19.03■□□□□ 0.64
SHKBP1-221ENST00000599833 RSC1A1Q92681 617 aa19.03■□□□□ 0.64
SHKBP1-221ENST00000599833 GRAMD1AQ96CP6 724 aa19.03■□□□□ 0.64
SHKBP1-221ENST00000599833 CXorf40BQ96DE9 158 aa19.03■□□□□ 0.64
SHKBP1-221ENST00000599833 STN1Q9H668 368 aaKnown RBP19.03■□□□□ 0.64
SHKBP1-221ENST00000599833 FBXO6Q9NRD1 293 aaPredicted RBP19.03■□□□□ 0.64
SHKBP1-221ENST00000599833 LATS2Q9NRM7 1088 aa19.03■□□□□ 0.64
SHKBP1-221ENST00000599833 ZDHHC18Q9NUE0 388 aa19.03■□□□□ 0.64
SHKBP1-221ENST00000599833 IMP3Q9NV31 184 aaKnown RBP19.03■□□□□ 0.64
SHKBP1-221ENST00000599833 INTS10Q9NVR2 710 aaKnown RBP19.03■□□□□ 0.64
SHKBP1-221ENST00000599833 DKK4Q9UBT3 224 aa19.03■□□□□ 0.64
SHKBP1-221ENST00000599833 DMGDHQ9UI17 866 aaKnown RBP19.03■□□□□ 0.64
SHKBP1-221ENST00000599833 GNPTGQ9UJJ9 305 aa19.03■□□□□ 0.64
SHKBP1-221ENST00000599833 CRYL1Q9Y2S2 319 aa19.03■□□□□ 0.64
SHKBP1-221ENST00000599833 ESYT3A0FGR9 886 aa19.02■□□□□ 0.64
SHKBP1-221ENST00000599833 TAF4O00268 1085 aa19.02■□□□□ 0.64
SHKBP1-221ENST00000599833 NIPSNAP2O75323 286 aa19.02■□□□□ 0.64
SHKBP1-221ENST00000599833 SLCO2B1O94956 709 aa19.02■□□□□ 0.64
SHKBP1-221ENST00000599833 C1QAP02745 245 aa19.02■□□□□ 0.64
SHKBP1-221ENST00000599833 C9P02748 559 aa19.02■□□□□ 0.64
SHKBP1-221ENST00000599833 FMO4P31512 558 aa19.02■□□□□ 0.64
SHKBP1-221ENST00000599833 PPARGP37231 505 aaPredicted RBP19.02■□□□□ 0.64
SHKBP1-221ENST00000599833 INHBCP55103 352 aa19.02■□□□□ 0.64
SHKBP1-221ENST00000599833 EIF3BP55884 814 aaKnown RBP19.02■□□□□ 0.64
SHKBP1-221ENST00000599833 PDIA2Q13087 525 aaKnown RBP19.02■□□□□ 0.64
SHKBP1-221ENST00000599833 C16orf72Q14CZ0 275 aa19.02■□□□□ 0.64
SHKBP1-221ENST00000599833 BRD3Q15059 726 aa19.02■□□□□ 0.64
SHKBP1-221ENST00000599833 TEDDM1Q5T9Z0 273 aa19.02■□□□□ 0.64
SHKBP1-221ENST00000599833 SDCCAG8Q86SQ7 713 aaPredicted RBP19.02■□□□□ 0.64
SHKBP1-221ENST00000599833 PIM3Q86V86 326 aa19.02■□□□□ 0.64
SHKBP1-221ENST00000599833 ANKMY2Q8IV38 441 aa19.02■□□□□ 0.64
SHKBP1-221ENST00000599833 TRIM48Q8IWZ4 208 aa19.02■□□□□ 0.64
SHKBP1-221ENST00000599833 SLC22A15Q8IZD6 547 aa19.02■□□□□ 0.64
SHKBP1-221ENST00000599833 C2CD4AQ8NCU7 369 aaPredicted RBP19.02■□□□□ 0.64
SHKBP1-221ENST00000599833 FBXO36Q8NEA4 188 aa19.02■□□□□ 0.64
SHKBP1-221ENST00000599833 CERS2Q96G23 380 aa19.02■□□□□ 0.64
SHKBP1-221ENST00000599833 SLC30A3Q99726 388 aa19.02■□□□□ 0.64
SHKBP1-221ENST00000599833 KIR3DX1Q9H7L2 352 aa19.02■□□□□ 0.64
SHKBP1-221ENST00000599833 IARS2Q9NSE4 1012 aaKnown RBP19.02■□□□□ 0.64
SHKBP1-221ENST00000599833 MOCS1Q9NZB8 636 aa19.02■□□□□ 0.64
SHKBP1-221ENST00000599833 ZC3H7BQ9UGR2 993 aaKnown RBP19.02■□□□□ 0.64
SHKBP1-221ENST00000599833 SLC24A2Q9UI40 661 aa19.02■□□□□ 0.64
SHKBP1-221ENST00000599833 FBXO5Q9UKT4 447 aa19.02■□□□□ 0.64
SHKBP1-221ENST00000599833 UTP11Q9Y3A2 253 aaKnown RBP19.02■□□□□ 0.64
SHKBP1-221ENST00000599833 LOC400499M0QZD8 3231 aa19.02■□□□□ 0.63
SHKBP1-221ENST00000599833 DUX1O43812 170 aa19.01■□□□□ 0.63
SHKBP1-221ENST00000599833 HAUS5O94927 633 aa19.01■□□□□ 0.63
SHKBP1-221ENST00000599833 ESR1P03372 595 aa19.01■□□□□ 0.63
SHKBP1-221ENST00000599833 LEPRP48357 1165 aaKnown RBP19.01■□□□□ 0.63
SHKBP1-221ENST00000599833 GFERP55789 205 aa19.01■□□□□ 0.63
SHKBP1-221ENST00000599833 PPP1CAP62136 330 aa19.01■□□□□ 0.63
SHKBP1-221ENST00000599833 BIRC2Q13490 618 aa19.01■□□□□ 0.63
SHKBP1-221ENST00000599833 MAP9Q49MG5 647 aa19.01■□□□□ 0.63
SHKBP1-221ENST00000599833 C8orf74Q6P047 294 aa19.01■□□□□ 0.63
SHKBP1-221ENST00000599833 TMEM71Q6P5X7 295 aa19.01■□□□□ 0.63
SHKBP1-221ENST00000599833 CNSTQ6PJW8 725 aa19.01■□□□□ 0.63
SHKBP1-221ENST00000599833 IGF2-ASQ6U949 168 aa19.01■□□□□ 0.63
SHKBP1-221ENST00000599833 KDF1Q8NAX2 398 aaPredicted RBP19.01■□□□□ 0.63
SHKBP1-221ENST00000599833 LRRN4CLQ8ND94 238 aa19.01■□□□□ 0.63
SHKBP1-221ENST00000599833 OR10G6Q8NH81 332 aa19.01■□□□□ 0.63
SHKBP1-221ENST00000599833 GIMAP7Q8NHV1 300 aa19.01■□□□□ 0.63
SHKBP1-221ENST00000599833 MDM1Q8TC05 714 aa19.01■□□□□ 0.63
SHKBP1-221ENST00000599833 ZFPM2Q8WW38 1151 aa19.01■□□□□ 0.63
SHKBP1-221ENST00000599833 CCDC74BQ96LY2 380 aa19.01■□□□□ 0.63
SHKBP1-221ENST00000599833 TMEM74Q96NL1 305 aa19.01■□□□□ 0.63
SHKBP1-221ENST00000599833 PHACTR1Q9C0D0 580 aa19.01■□□□□ 0.63
SHKBP1-221ENST00000599833 RAB17Q9H0T7 212 aa19.01■□□□□ 0.63
SHKBP1-221ENST00000599833 EPB41L1Q9H4G0 881 aa19.01■□□□□ 0.63
SHKBP1-221ENST00000599833 ASCL3Q9NQ33 180 aa19.01■□□□□ 0.63
SHKBP1-221ENST00000599833 SATB2Q9UPW6 733 aa19.01■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms