RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 TRIM56Q9BRZ2 755 aaKnown RBP15.74■□□□□ 0.11
TRIM28-213ENST00000598355 CARD6Q9BX69 1037 aa15.74■□□□□ 0.11
TRIM28-213ENST00000598355 TWSG1Q9GZX9 223 aa15.74■□□□□ 0.11
TRIM28-213ENST00000598355 AKAP7Q9P0M2 348 aaPredicted RBP15.74■□□□□ 0.11
TRIM28-213ENST00000598355 CDYLQ9Y232 598 aa15.74■□□□□ 0.11
TRIM28-213ENST00000598355 MAGEB16A2A368 324 aa15.73■□□□□ 0.11
TRIM28-213ENST00000598355 SDR42E2A6NKP2 422 aa15.73■□□□□ 0.11
TRIM28-213ENST00000598355 F8W8V4 182 aa15.73■□□□□ 0.11
TRIM28-213ENST00000598355 CAPN5O15484 640 aaPredicted RBP15.73■□□□□ 0.11
TRIM28-213ENST00000598355 PRAMEF10O60809 474 aa15.73■□□□□ 0.11
TRIM28-213ENST00000598355 VAPBO95292 243 aa15.73■□□□□ 0.11
TRIM28-213ENST00000598355 POLBP06746 335 aa15.73■□□□□ 0.11
TRIM28-213ENST00000598355 TYRP1P17643 537 aa15.73■□□□□ 0.11
TRIM28-213ENST00000598355 MPSTP25325 297 aa15.73■□□□□ 0.11
TRIM28-213ENST00000598355 CSTF2P33240 577 aaKnown RBP eCLIP15.73■□□□□ 0.11
TRIM28-213ENST00000598355 MAPK9P45984 424 aa15.73■□□□□ 0.11
TRIM28-213ENST00000598355 PREPP48147 710 aa15.73■□□□□ 0.11
TRIM28-213ENST00000598355 TERF1P54274 439 aa15.73■□□□□ 0.11
TRIM28-213ENST00000598355 ADARP55265 1226 aaKnown RBP15.73■□□□□ 0.11
TRIM28-213ENST00000598355 PLOD1Q02809 727 aaPredicted RBP15.73■□□□□ 0.11
TRIM28-213ENST00000598355 TLE3Q04726 772 aa15.73■□□□□ 0.11
TRIM28-213ENST00000598355 BOP1Q14137 746 aaKnown RBP15.73■□□□□ 0.11
TRIM28-213ENST00000598355 CES3Q6UWW8 571 aa15.73■□□□□ 0.11
TRIM28-213ENST00000598355 LDB1Q86U70 411 aaPredicted RBP15.73■□□□□ 0.11
TRIM28-213ENST00000598355 LRRC6Q86X45 466 aa15.73■□□□□ 0.11
TRIM28-213ENST00000598355 JAMLQ86YT9 394 aa15.73■□□□□ 0.11
TRIM28-213ENST00000598355 FCRL3Q96P31 734 aaPredicted RBP15.73■□□□□ 0.11
TRIM28-213ENST00000598355 DDA1Q9BW61 102 aa15.73■□□□□ 0.11
TRIM28-213ENST00000598355 ZNF768Q9H5H4 540 aaKnown RBP15.73■□□□□ 0.11
TRIM28-213ENST00000598355 MVB12BQ9H7P6 319 aa15.73■□□□□ 0.11
TRIM28-213ENST00000598355 ASIC3Q9UHC3 531 aa15.73■□□□□ 0.11
TRIM28-213ENST00000598355 ANAPC5Q9UJX4 755 aa15.73■□□□□ 0.11
TRIM28-213ENST00000598355 MGAQ8IWI9 3026 aa15.73■□□□□ 0.11
TRIM28-213ENST00000598355 OR5K3A6NET4 321 aa15.72■□□□□ 0.11
TRIM28-213ENST00000598355 BHMG1C9JSJ3 638 aaPredicted RBP15.72■□□□□ 0.11
TRIM28-213ENST00000598355 GOLGA8MH3BSY2 632 aa15.72■□□□□ 0.11
TRIM28-213ENST00000598355 TP73O15350 636 aa15.72■□□□□ 0.11
TRIM28-213ENST00000598355 RRP8O43159 456 aaKnown RBP15.72■□□□□ 0.11
TRIM28-213ENST00000598355 GPC4O75487 556 aa15.72■□□□□ 0.11
TRIM28-213ENST00000598355 USP1O94782 785 aa15.72■□□□□ 0.11
TRIM28-213ENST00000598355 AMD1P17707 334 aa15.72■□□□□ 0.11
TRIM28-213ENST00000598355 PAMP19021 973 aa15.72■□□□□ 0.11
TRIM28-213ENST00000598355 CD82P27701 267 aa15.72■□□□□ 0.11
TRIM28-213ENST00000598355 ITPKBP27987 946 aa15.72■□□□□ 0.11
TRIM28-213ENST00000598355 CCR7P32248 378 aa15.72■□□□□ 0.11
TRIM28-213ENST00000598355 ABCG1P45844 678 aa15.72■□□□□ 0.11
TRIM28-213ENST00000598355 LEPRP48357 1165 aaKnown RBP15.72■□□□□ 0.11
TRIM28-213ENST00000598355 ANKRD20A4Q4UJ75 823 aa15.72■□□□□ 0.11
TRIM28-213ENST00000598355 MRNIPQ6NTE8 343 aa15.72■□□□□ 0.11
TRIM28-213ENST00000598355 KLHL35Q6PF15 583 aa15.72■□□□□ 0.11
TRIM28-213ENST00000598355 PCGF5Q86SE9 256 aa15.72■□□□□ 0.11
TRIM28-213ENST00000598355 SLC22A15Q8IZD6 547 aa15.72■□□□□ 0.11
TRIM28-213ENST00000598355 ACVR1CQ8NER5 493 aa15.72■□□□□ 0.11
TRIM28-213ENST00000598355 KCNE4Q8WWG9 221 aa15.72■□□□□ 0.11
TRIM28-213ENST00000598355 KLHL6Q8WZ60 621 aa15.72■□□□□ 0.11
TRIM28-213ENST00000598355 ELMO1Q92556 727 aa15.72■□□□□ 0.11
TRIM28-213ENST00000598355 LPGAT1Q92604 370 aa15.72■□□□□ 0.11
TRIM28-213ENST00000598355 PMEPA1Q969W9 287 aa15.72■□□□□ 0.11
TRIM28-213ENST00000598355 DCBLD2Q96PD2 775 aa15.72■□□□□ 0.11
TRIM28-213ENST00000598355 TCF12Q99081 682 aa15.72■□□□□ 0.11
TRIM28-213ENST00000598355 CD180Q99467 661 aa15.72■□□□□ 0.11
TRIM28-213ENST00000598355 DPH1Q9BZG8 443 aa15.72■□□□□ 0.11
TRIM28-213ENST00000598355 ZMYND15Q9H091 742 aa15.72■□□□□ 0.11
TRIM28-213ENST00000598355 OCIAD1Q9NX40 245 aa15.72■□□□□ 0.11
TRIM28-213ENST00000598355 FOXJ2Q9P0K8 574 aa15.72■□□□□ 0.11
TRIM28-213ENST00000598355 SAMD15Q9P1V8 674 aa15.72■□□□□ 0.11
TRIM28-213ENST00000598355 COLEC10Q9Y6Z7 277 aa15.72■□□□□ 0.11
TRIM28-213ENST00000598355 IFRD1O00458 451 aaPredicted RBP15.71■□□□□ 0.11
TRIM28-213ENST00000598355 AOAHP28039 575 aa15.71■□□□□ 0.11
TRIM28-213ENST00000598355 PAFAH1B1P43034 410 aa15.71■□□□□ 0.11
TRIM28-213ENST00000598355 RAB15P59190 212 aa15.71■□□□□ 0.11
TRIM28-213ENST00000598355 PPP1CAP62136 330 aa15.71■□□□□ 0.11
TRIM28-213ENST00000598355 DR1Q01658 176 aa15.71■□□□□ 0.11
TRIM28-213ENST00000598355 MC2RQ01718 297 aa15.71■□□□□ 0.11
TRIM28-213ENST00000598355 CLN3Q13286 438 aa15.71■□□□□ 0.11
TRIM28-213ENST00000598355 DHX34Q14147 1143 aaKnown RBP15.71■□□□□ 0.11
TRIM28-213ENST00000598355 GBX1Q14549 363 aa15.71■□□□□ 0.11
TRIM28-213ENST00000598355 MORF4L2Q15014 288 aa15.71■□□□□ 0.11
TRIM28-213ENST00000598355 CTSL3PQ5NE16 218 aa15.71■□□□□ 0.11
TRIM28-213ENST00000598355 RNF187Q5TA31 235 aaPredicted RBP15.71■□□□□ 0.11
TRIM28-213ENST00000598355 IZUMO3Q5VZ72 239 aa15.71■□□□□ 0.11
TRIM28-213ENST00000598355 CENPUQ71F23 418 aa15.71■□□□□ 0.11
TRIM28-213ENST00000598355 DTX1Q86Y01 620 aa15.71■□□□□ 0.11
TRIM28-213ENST00000598355 CILP2Q8IUL8 1156 aa15.71■□□□□ 0.11
TRIM28-213ENST00000598355 KLHL7Q8IXQ5 586 aa15.71■□□□□ 0.11
TRIM28-213ENST00000598355 CARFQ8N187 725 aa15.71■□□□□ 0.11
TRIM28-213ENST00000598355 JPH3Q8WXH2 748 aaPredicted RBP15.71■□□□□ 0.11
TRIM28-213ENST00000598355 TFGQ92734 400 aaPredicted RBP15.71■□□□□ 0.11
TRIM28-213ENST00000598355 USP7Q93009 1102 aa15.71■□□□□ 0.11
TRIM28-213ENST00000598355 ART4Q93070 314 aa15.71■□□□□ 0.11
TRIM28-213ENST00000598355 ZNF669Q96BR6 464 aaPredicted RBP15.71■□□□□ 0.11
TRIM28-213ENST00000598355 ZDHHC12Q96GR4 267 aa15.71■□□□□ 0.11
TRIM28-213ENST00000598355 BIRC8Q96P09 236 aa15.71■□□□□ 0.11
TRIM28-213ENST00000598355 TGM7Q96PF1 710 aa15.71■□□□□ 0.11
TRIM28-213ENST00000598355 TAAR9Q96RI9 348 aa15.71■□□□□ 0.11
TRIM28-213ENST00000598355 TFB2MQ9H5Q4 396 aaKnown RBP15.71■□□□□ 0.11
TRIM28-213ENST00000598355 FBXO8Q9NRD0 319 aa15.71■□□□□ 0.11
TRIM28-213ENST00000598355 GNPTGQ9UJJ9 305 aa15.71■□□□□ 0.11
TRIM28-213ENST00000598355 RPS6KL1Q9Y6S9 549 aa15.71■□□□□ 0.11
TRIM28-213ENST00000598355 CACNA1GO43497 2377 aa15.7■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms