RNA–Protein interactions for RNA: ENST00000588915.1

VMP1-209, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 231 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-209ENST00000588915 UNC79Q9P2D8 2635 aa13.61□□□□□ -0.23
VMP1-209ENST00000588915 UTP20O75691 2785 aaKnown RBP13.6□□□□□ -0.23
VMP1-209ENST00000588915 TNRC6AQ8NDV7 1962 aaKnown RBP13.6□□□□□ -0.23
VMP1-209ENST00000588915 SLC9B1P1A6NJY1 282 aa13.6□□□□□ -0.23
VMP1-209ENST00000588915 GPR39O43194 453 aa13.6□□□□□ -0.23
VMP1-209ENST00000588915 SPOPO43791 374 aa13.6□□□□□ -0.23
VMP1-209ENST00000588915 KLHL41O60662 606 aa13.6□□□□□ -0.23
VMP1-209ENST00000588915 ANXA9O76027 345 aa13.6□□□□□ -0.23
VMP1-209ENST00000588915 SRP72O76094 671 aaKnown RBP13.6□□□□□ -0.23
VMP1-209ENST00000588915 ZRANB2O95218 330 aaKnown RBP eCLIP13.6□□□□□ -0.23
VMP1-209ENST00000588915 CAPN1P07384 714 aa13.6□□□□□ -0.23
VMP1-209ENST00000588915 CD63P08962 238 aa13.6□□□□□ -0.23
VMP1-209ENST00000588915 PECAM1P16284 738 aaPredicted RBP13.6□□□□□ -0.23
VMP1-209ENST00000588915 POLR2CP19387 275 aaPredicted RBP13.6□□□□□ -0.23
VMP1-209ENST00000588915 HADHAP40939 763 aa13.6□□□□□ -0.23
VMP1-209ENST00000588915 CD151P48509 253 aa13.6□□□□□ -0.23
VMP1-209ENST00000588915 GEMP55040 296 aa13.6□□□□□ -0.23
VMP1-209ENST00000588915 CHAF1BQ13112 559 aa13.6□□□□□ -0.23
VMP1-209ENST00000588915 KRT33BQ14525 404 aa13.6□□□□□ -0.23
VMP1-209ENST00000588915 TFDP3Q5H9I0 405 aa13.6□□□□□ -0.23
VMP1-209ENST00000588915 RANBP10Q6VN20 620 aa13.6□□□□□ -0.23
VMP1-209ENST00000588915 CFAP206Q8IYR0 622 aa13.6□□□□□ -0.23
VMP1-209ENST00000588915 FDCSPQ8NFU4 85 aa13.6□□□□□ -0.23
VMP1-209ENST00000588915 IPMKQ8NFU5 416 aa13.6□□□□□ -0.23
VMP1-209ENST00000588915 SPDYE1Q8NFV5 336 aaPredicted RBP13.6□□□□□ -0.23
VMP1-209ENST00000588915 OR4E2Q8NGC2 313 aa13.6□□□□□ -0.23
VMP1-209ENST00000588915 ULK4Q96C45 1275 aa13.6□□□□□ -0.23
VMP1-209ENST00000588915 CLIP3Q96DZ5 547 aa13.6□□□□□ -0.23
VMP1-209ENST00000588915 DCUN1D1Q96GG9 259 aa13.6□□□□□ -0.23
VMP1-209ENST00000588915 SMAD5Q99717 465 aaKnown RBP13.6□□□□□ -0.23
VMP1-209ENST00000588915 C17orf62Q9BQA9 187 aa13.6□□□□□ -0.23
VMP1-209ENST00000588915 DHRS4Q9BTZ2 278 aa13.6□□□□□ -0.23
VMP1-209ENST00000588915 FSD1LQ9BXM9 530 aa13.6□□□□□ -0.23
VMP1-209ENST00000588915 PITPNM3Q9BZ71 974 aa13.6□□□□□ -0.23
VMP1-209ENST00000588915 ACTR5Q9H9F9 607 aaPredicted RBP13.6□□□□□ -0.23
VMP1-209ENST00000588915 PCMTD2Q9NV79 361 aa13.6□□□□□ -0.23
VMP1-209ENST00000588915 SHANK1Q9Y566 2161 aa13.6□□□□□ -0.23
VMP1-209ENST00000588915 SYCE3A1L190 88 aa13.59□□□□□ -0.23
VMP1-209ENST00000588915 CBFA2T2O43439 604 aa13.59□□□□□ -0.23
VMP1-209ENST00000588915 BUD23O43709 281 aaKnown RBP13.59□□□□□ -0.23
VMP1-209ENST00000588915 SGTAO43765 313 aa13.59□□□□□ -0.23
VMP1-209ENST00000588915 IGHEP01854 428 aa13.59□□□□□ -0.23
VMP1-209ENST00000588915 COMTP21964 271 aa13.59□□□□□ -0.23
VMP1-209ENST00000588915 PBLDP30039 288 aaPredicted RBP13.59□□□□□ -0.23
VMP1-209ENST00000588915 PRDX3P30048 256 aaKnown RBP13.59□□□□□ -0.23
VMP1-209ENST00000588915 PREPP48147 710 aa13.59□□□□□ -0.23
VMP1-209ENST00000588915 PRLHRP49683 370 aa13.59□□□□□ -0.23
VMP1-209ENST00000588915 HADHBP55084 474 aaKnown RBP13.59□□□□□ -0.23
VMP1-209ENST00000588915 XIAPP98170 497 aa13.59□□□□□ -0.23
VMP1-209ENST00000588915 ZNF789Q5FWF6 425 aa13.59□□□□□ -0.23
VMP1-209ENST00000588915 KAZNQ674X7 775 aa13.59□□□□□ -0.23
VMP1-209ENST00000588915 DUS1LQ6P1R4 473 aaKnown RBP13.59□□□□□ -0.23
VMP1-209ENST00000588915 SPOCD1Q6ZMY3 1216 aa13.59□□□□□ -0.23
VMP1-209ENST00000588915 DET1Q7L5Y6 550 aa13.59□□□□□ -0.23
VMP1-209ENST00000588915 ZC3H18Q86VM9 953 aaKnown RBP13.59□□□□□ -0.23
VMP1-209ENST00000588915 SYTL1Q8IYJ3 562 aa13.59□□□□□ -0.23
VMP1-209ENST00000588915 RCOR2Q8IZ40 523 aa13.59□□□□□ -0.23
VMP1-209ENST00000588915 ZBTB2Q8N680 514 aa13.59□□□□□ -0.23
VMP1-209ENST00000588915 Q8NA96 180 aa13.59□□□□□ -0.23
VMP1-209ENST00000588915 LCN9Q8WX39 176 aa13.59□□□□□ -0.23
VMP1-209ENST00000588915 RMDN2Q96LZ7 410 aa13.59□□□□□ -0.23
VMP1-209ENST00000588915 QKIQ96PU8 341 aaKnown RBP eCLIP13.59□□□□□ -0.23
VMP1-209ENST00000588915 CHP1Q99653 195 aa13.59□□□□□ -0.23
VMP1-209ENST00000588915 FERMT1Q9BQL6 677 aa13.59□□□□□ -0.23
VMP1-209ENST00000588915 TLR10Q9BXR5 811 aa13.59□□□□□ -0.23
VMP1-209ENST00000588915 SRMSQ9H3Y6 488 aa13.59□□□□□ -0.23
VMP1-209ENST00000588915 TFB2MQ9H5Q4 396 aaKnown RBP13.59□□□□□ -0.23
VMP1-209ENST00000588915 MVB12BQ9H7P6 319 aa13.59□□□□□ -0.23
VMP1-209ENST00000588915 NHEJ1Q9H9Q4 299 aaPredicted RBP13.59□□□□□ -0.23
VMP1-209ENST00000588915 GPR83Q9NYM4 423 aa13.59□□□□□ -0.23
VMP1-209ENST00000588915 RSPH14Q9UHP6 348 aa13.59□□□□□ -0.23
VMP1-209ENST00000588915 ALG6Q9Y672 507 aa13.59□□□□□ -0.23
VMP1-209ENST00000588915 hCG_1818297A0A087WSY0 165 aa13.58□□□□□ -0.24
VMP1-209ENST00000588915 TCP11X1B4DZS4 312 aa13.58□□□□□ -0.24
VMP1-209ENST00000588915 CFAP99D6REC4 459 aa13.58□□□□□ -0.24
VMP1-209ENST00000588915 IFRD1O00458 451 aaPredicted RBP13.58□□□□□ -0.24
VMP1-209ENST00000588915 SEMA7AO75326 666 aa13.58□□□□□ -0.24
VMP1-209ENST00000588915 CRTAMO95727 393 aa13.58□□□□□ -0.24
VMP1-209ENST00000588915 AGTP01019 485 aa13.58□□□□□ -0.24
VMP1-209ENST00000588915 POLBP06746 335 aa13.58□□□□□ -0.24
VMP1-209ENST00000588915 GSTM1P09488 218 aa13.58□□□□□ -0.24
VMP1-209ENST00000588915 TPM1P09493 284 aa13.58□□□□□ -0.24
VMP1-209ENST00000588915 TNNT1P13805 278 aa13.58□□□□□ -0.24
VMP1-209ENST00000588915 CYP2A7P20853 494 aa13.58□□□□□ -0.24
VMP1-209ENST00000588915 AGXTP21549 392 aa13.58□□□□□ -0.24
VMP1-209ENST00000588915 ITGA1P56199 1179 aa13.58□□□□□ -0.24
VMP1-209ENST00000588915 GSTM4Q03013 218 aa13.58□□□□□ -0.24
VMP1-209ENST00000588915 ABRQ12979 859 aa13.58□□□□□ -0.24
VMP1-209ENST00000588915 RPA4Q13156 261 aa13.58□□□□□ -0.24
VMP1-209ENST00000588915 PTPRCAPQ14761 206 aa13.58□□□□□ -0.24
VMP1-209ENST00000588915 NCF4Q15080 339 aa13.58□□□□□ -0.24
VMP1-209ENST00000588915 SLC6A19Q695T7 634 aa13.58□□□□□ -0.24
VMP1-209ENST00000588915 ITPRIPL1Q6GPH6 555 aa13.58□□□□□ -0.24
VMP1-209ENST00000588915 LCN10Q6JVE6 187 aa13.58□□□□□ -0.24
VMP1-209ENST00000588915 ZNF449Q6P9G9 518 aa13.58□□□□□ -0.24
VMP1-209ENST00000588915 FAM198BQ6UWH4 519 aa13.58□□□□□ -0.24
VMP1-209ENST00000588915 RAB43Q86YS6 212 aa13.58□□□□□ -0.24
VMP1-209ENST00000588915 KATNAL2Q8IYT4 538 aa13.58□□□□□ -0.24
VMP1-209ENST00000588915 RBMXL3Q8N7X1 1067 aaKnown RBP13.58□□□□□ -0.24
VMP1-209ENST00000588915 OR4K2Q8NGD2 314 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms