RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 OLFML3Q9NRN5 406 aa4.24□□□□□ -1.73
SMCHD1-204ENST00000581226 RHCGQ9UBD6 479 aa4.24□□□□□ -1.73
SMCHD1-204ENST00000581226 SPIN1Q9Y657 262 aaPredicted RBP4.24□□□□□ -1.73
SMCHD1-204ENST00000581226 NOTCH4Q99466 2003 aa4.24□□□□□ -1.73
SMCHD1-204ENST00000581226 GREB1LQ9C091 1923 aaPredicted RBP4.23□□□□□ -1.73
SMCHD1-204ENST00000581226 GPR75-ASB3A0A0A6YYF3 556 aa4.23□□□□□ -1.73
SMCHD1-204ENST00000581226 PMS2P5A8MQ11 134 aa4.23□□□□□ -1.73
SMCHD1-204ENST00000581226 XRCC3O43542 346 aa4.23□□□□□ -1.73
SMCHD1-204ENST00000581226 KRT86O43790 486 aa4.23□□□□□ -1.73
SMCHD1-204ENST00000581226 SOCS5O75159 536 aa4.23□□□□□ -1.73
SMCHD1-204ENST00000581226 PGM3O95394 542 aa4.23□□□□□ -1.73
SMCHD1-204ENST00000581226 STARD3NLO95772 234 aa4.23□□□□□ -1.73
SMCHD1-204ENST00000581226 TPOP07202 933 aa4.23□□□□□ -1.73
SMCHD1-204ENST00000581226 ACP2P11117 423 aa4.23□□□□□ -1.73
SMCHD1-204ENST00000581226 FGF5P12034 268 aa4.23□□□□□ -1.73
SMCHD1-204ENST00000581226 GABRA5P31644 462 aa4.23□□□□□ -1.73
SMCHD1-204ENST00000581226 NNMTP40261 264 aa4.23□□□□□ -1.73
SMCHD1-204ENST00000581226 KRT81Q14533 505 aa4.23□□□□□ -1.73
SMCHD1-204ENST00000581226 CFAP58Q5T655 872 aa4.23□□□□□ -1.73
SMCHD1-204ENST00000581226 FIGLAQ6QHK4 219 aa4.23□□□□□ -1.73
SMCHD1-204ENST00000581226 PCGF5Q86SE9 256 aa4.23□□□□□ -1.73
SMCHD1-204ENST00000581226 CEP57Q86XR8 500 aa4.23□□□□□ -1.73
SMCHD1-204ENST00000581226 DNAAF5Q86Y56 855 aa4.23□□□□□ -1.73
SMCHD1-204ENST00000581226 GUF1Q8N442 669 aaKnown RBP4.23□□□□□ -1.73
SMCHD1-204ENST00000581226 MINDY1Q8N5J2 469 aa4.23□□□□□ -1.73
SMCHD1-204ENST00000581226 TAS1R2Q8TE23 839 aa4.23□□□□□ -1.73
SMCHD1-204ENST00000581226 FCAMRQ8WWV6 532 aa4.23□□□□□ -1.73
SMCHD1-204ENST00000581226 NR4A3Q92570 626 aa4.23□□□□□ -1.73
SMCHD1-204ENST00000581226 LPGAT1Q92604 370 aa4.23□□□□□ -1.73
SMCHD1-204ENST00000581226 ZNF524Q96C55 264 aa4.23□□□□□ -1.73
SMCHD1-204ENST00000581226 TMCO6Q96DC7 493 aa4.23□□□□□ -1.73
SMCHD1-204ENST00000581226 PELI2Q9HAT8 420 aa4.23□□□□□ -1.73
SMCHD1-204ENST00000581226 CHORDC1Q9UHD1 332 aaPredicted RBP4.23□□□□□ -1.73
SMCHD1-204ENST00000581226 ACAD8Q9UKU7 415 aa4.23□□□□□ -1.73
SMCHD1-204ENST00000581226 FLT1P17948 1338 aa4.22□□□□□ -1.73
SMCHD1-204ENST00000581226 ZNF541Q9H0D2 1346 aa4.22□□□□□ -1.73
SMCHD1-204ENST00000581226 GLOD5A6NK44 160 aa4.22□□□□□ -1.73
SMCHD1-204ENST00000581226 OR6C76A6NM76 312 aa4.22□□□□□ -1.73
SMCHD1-204ENST00000581226 HEPACAM2A8MVW5 462 aa4.22□□□□□ -1.73
SMCHD1-204ENST00000581226 SMIM1B2RUZ4 78 aa4.22□□□□□ -1.73
SMCHD1-204ENST00000581226 PLGP00747 810 aaPredicted RBP4.22□□□□□ -1.73
SMCHD1-204ENST00000581226 INHBAP08476 426 aa4.22□□□□□ -1.73
SMCHD1-204ENST00000581226 TCEA1P23193 301 aaKnown RBP4.22□□□□□ -1.73
SMCHD1-204ENST00000581226 LMAN1P49257 510 aa4.22□□□□□ -1.73
SMCHD1-204ENST00000581226 CDK3Q00526 305 aa4.22□□□□□ -1.73
SMCHD1-204ENST00000581226 BAATQ14032 418 aaPredicted RBP4.22□□□□□ -1.73
SMCHD1-204ENST00000581226 OTUD3Q5T2D3 398 aaPredicted RBP4.22□□□□□ -1.73
SMCHD1-204ENST00000581226 TEX38Q6PEX7 206 aa4.22□□□□□ -1.73
SMCHD1-204ENST00000581226 RBMS3Q6XE24 437 aaKnown RBP4.22□□□□□ -1.73
SMCHD1-204ENST00000581226 ADIPOR2Q86V24 386 aa4.22□□□□□ -1.73
SMCHD1-204ENST00000581226 KLHDC8BQ8IXV7 354 aa4.22□□□□□ -1.73
SMCHD1-204ENST00000581226 AFAP1Q8N556 730 aa4.22□□□□□ -1.73
SMCHD1-204ENST00000581226 CNBD1Q8NA66 436 aa4.22□□□□□ -1.73
SMCHD1-204ENST00000581226 OR2T12Q8NG77 320 aa4.22□□□□□ -1.73
SMCHD1-204ENST00000581226 OR2AJ1Q8NGZ0 328 aa4.22□□□□□ -1.73
SMCHD1-204ENST00000581226 ZNF622Q969S3 477 aaKnown RBP eCLIP4.22□□□□□ -1.736e-9■■□□□ 11.9
SMCHD1-204ENST00000581226 FNDC11Q9BVV2 318 aa4.22□□□□□ -1.73
SMCHD1-204ENST00000581226 ECHDC1Q9NTX5 307 aa4.22□□□□□ -1.73
SMCHD1-204ENST00000581226 CPSF2Q9P2I0 782 aaKnown RBP4.22□□□□□ -1.73
SMCHD1-204ENST00000581226 PPIEQ9UNP9 301 aaKnown RBP4.22□□□□□ -1.73
SMCHD1-204ENST00000581226 WBP11Q9Y2W2 641 aaKnown RBP4.22□□□□□ -1.73
SMCHD1-204ENST00000581226 HMGB1P1B2RPK0 211 aaPredicted RBP4.21□□□□□ -1.74
SMCHD1-204ENST00000581226 CLIC2O15247 247 aa4.21□□□□□ -1.74
SMCHD1-204ENST00000581226 TSPAN1O60635 241 aa4.21□□□□□ -1.74
SMCHD1-204ENST00000581226 TSHBP01222 138 aa4.21□□□□□ -1.74
SMCHD1-204ENST00000581226 AMBPP02760 352 aa4.21□□□□□ -1.74
SMCHD1-204ENST00000581226 IGHV4-38-2P0DP08 117 aa4.21□□□□□ -1.74
SMCHD1-204ENST00000581226 PNRC1Q12796 327 aaPredicted RBP4.21□□□□□ -1.74
SMCHD1-204ENST00000581226 NR1D2Q14995 579 aa4.21□□□□□ -1.74
SMCHD1-204ENST00000581226 ZC2HC1CQ53FD0 456 aaPredicted RBP4.21□□□□□ -1.74
SMCHD1-204ENST00000581226 BMP2KLQ5H9B9 411 aa4.21□□□□□ -1.74
SMCHD1-204ENST00000581226 GRTP1Q5TC63 336 aa4.21□□□□□ -1.74
SMCHD1-204ENST00000581226 ENOSF1Q7L5Y1 443 aa4.21□□□□□ -1.74
SMCHD1-204ENST00000581226 ADGRA1Q86SQ6 560 aa4.21□□□□□ -1.74
SMCHD1-204ENST00000581226 TRPT1Q86TN4 253 aaKnown RBP4.21□□□□□ -1.74
SMCHD1-204ENST00000581226 TMEM173Q86WV6 379 aaPredicted RBP4.21□□□□□ -1.74
SMCHD1-204ENST00000581226 PLD3Q8IV08 490 aa4.21□□□□□ -1.74
SMCHD1-204ENST00000581226 FOXP4Q8IVH2 680 aaPredicted RBP4.21□□□□□ -1.74
SMCHD1-204ENST00000581226 FAM114A1Q8IWE2 563 aa4.21□□□□□ -1.74
SMCHD1-204ENST00000581226 CPSF7Q8N684 471 aaKnown RBP4.21□□□□□ -1.74
SMCHD1-204ENST00000581226 SYT2Q8N9I0 419 aaPredicted RBP4.21□□□□□ -1.74
SMCHD1-204ENST00000581226 PAPD5Q8NDF8 572 aaKnown RBP4.21□□□□□ -1.74
SMCHD1-204ENST00000581226 PTERQ96BW5 349 aa4.21□□□□□ -1.74
SMCHD1-204ENST00000581226 DUX3Q96PT4 197 aa4.21□□□□□ -1.74
SMCHD1-204ENST00000581226 GCNAQ96QF7 691 aa4.21□□□□□ -1.74
SMCHD1-204ENST00000581226 ABHD1Q96SE0 405 aa4.21□□□□□ -1.74
SMCHD1-204ENST00000581226 RHNO1Q9BSD3 238 aa4.21□□□□□ -1.74
SMCHD1-204ENST00000581226 TRAF4Q9BUZ4 470 aaPredicted RBP4.21□□□□□ -1.74
SMCHD1-204ENST00000581226 MRPL1Q9BYD6 325 aaKnown RBP4.21□□□□□ -1.74
SMCHD1-204ENST00000581226 KLHL4Q9C0H6 718 aa4.21□□□□□ -1.74
SMCHD1-204ENST00000581226 DPAGT1Q9H3H5 408 aa4.21□□□□□ -1.74
SMCHD1-204ENST00000581226 ACKR4Q9NPB9 350 aa4.21□□□□□ -1.74
SMCHD1-204ENST00000581226 OSER1Q9NX31 292 aa4.21□□□□□ -1.74
SMCHD1-204ENST00000581226 ZNF624Q9P2J8 865 aaPredicted RBP4.21□□□□□ -1.74
SMCHD1-204ENST00000581226 SLC7A7Q9UM01 511 aa4.21□□□□□ -1.74
SMCHD1-204ENST00000581226 A0A0G2JLW4 131 aa4.2□□□□□ -1.74
SMCHD1-204ENST00000581226 A0A1W2PRB8 838 aa4.2□□□□□ -1.74
SMCHD1-204ENST00000581226 PRR32B1ATL7 298 aa4.2□□□□□ -1.74
SMCHD1-204ENST00000581226 PLOD2O00469 737 aa4.2□□□□□ -1.74
SMCHD1-204ENST00000581226 IPO8O15397 1037 aaKnown RBP4.2□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms