RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 USP10Q14694 798 aaKnown RBP16.72■□□□□ 0.27
NUP88-210ENST00000574867 BEND6Q5SZJ8 279 aaPredicted RBP16.72■□□□□ 0.27
NUP88-210ENST00000574867 IYDQ6PHW0 289 aa16.72■□□□□ 0.27
NUP88-210ENST00000574867 ADGRD1Q6QNK2 874 aa16.72■□□□□ 0.27
NUP88-210ENST00000574867 NAPRTQ6XQN6 538 aa16.72■□□□□ 0.27
NUP88-210ENST00000574867 PIM3Q86V86 326 aa16.72■□□□□ 0.27
NUP88-210ENST00000574867 NAGSQ8N159 534 aa16.72■□□□□ 0.27
NUP88-210ENST00000574867 SFRP1Q8N474 314 aa16.72■□□□□ 0.27
NUP88-210ENST00000574867 GPR156Q8NFN8 814 aa16.72■□□□□ 0.27
NUP88-210ENST00000574867 SETD7Q8WTS6 366 aaKnown RBP16.72■□□□□ 0.27
NUP88-210ENST00000574867 FAM122AQ96E09 287 aa16.72■□□□□ 0.27
NUP88-210ENST00000574867 EVA1BQ9NVM1 165 aa16.72■□□□□ 0.27
NUP88-210ENST00000574867 GALPQ9UBC7 116 aa16.72■□□□□ 0.27
NUP88-210ENST00000574867 PSMD13Q9UNM6 376 aa16.72■□□□□ 0.27
NUP88-210ENST00000574867 SIGLEC6O43699 453 aa16.71■□□□□ 0.27
NUP88-210ENST00000574867 NOBOXO60393 691 aa16.71■□□□□ 0.27
NUP88-210ENST00000574867 EML2O95834 649 aa16.71■□□□□ 0.27
NUP88-210ENST00000574867 BRAFP15056 766 aa16.71■□□□□ 0.27
NUP88-210ENST00000574867 STMN1P16949 149 aa16.71■□□□□ 0.27
NUP88-210ENST00000574867 SAT1P21673 171 aa16.71■□□□□ 0.27
NUP88-210ENST00000574867 PDHA2P29803 388 aa16.71■□□□□ 0.27
NUP88-210ENST00000574867 RPIAP49247 311 aa16.71■□□□□ 0.27
NUP88-210ENST00000574867 RGS4P49798 205 aa16.71■□□□□ 0.27
NUP88-210ENST00000574867 TAS2R39P59534 338 aa16.71■□□□□ 0.27
NUP88-210ENST00000574867 IFFO1Q0D2I5 559 aa16.71■□□□□ 0.27
NUP88-210ENST00000574867 RASA2Q15283 850 aa16.71■□□□□ 0.27
NUP88-210ENST00000574867 ZKSCAN8Q15776 578 aaPredicted RBP16.71■□□□□ 0.27
NUP88-210ENST00000574867 CAPRIN2Q6IMN6 1127 aaKnown RBP16.71■□□□□ 0.27
NUP88-210ENST00000574867 C17orf82Q86X59 251 aaPredicted RBP16.71■□□□□ 0.27
NUP88-210ENST00000574867 TDRPQ86YL5 185 aa16.71■□□□□ 0.27
NUP88-210ENST00000574867 KYQ8NBH2 561 aa16.71■□□□□ 0.27
NUP88-210ENST00000574867 ACVR1CQ8NER5 493 aa16.71■□□□□ 0.27
NUP88-210ENST00000574867 RMDN2Q96LZ7 410 aa16.71■□□□□ 0.27
NUP88-210ENST00000574867 SLC30A3Q99726 388 aa16.71■□□□□ 0.27
NUP88-210ENST00000574867 STN1Q9H668 368 aaKnown RBP16.71■□□□□ 0.27
NUP88-210ENST00000574867 SIRPGQ9P1W8 387 aa16.71■□□□□ 0.27
NUP88-210ENST00000574867 BTBD3Q9Y2F9 522 aa16.71■□□□□ 0.27
NUP88-210ENST00000574867 WDR37Q9Y2I8 494 aa16.71■□□□□ 0.27
NUP88-210ENST00000574867 ASCC3Q8N3C0 2202 aaKnown RBP16.71■□□□□ 0.27
NUP88-210ENST00000574867 MAPK9P45984 424 aa16.71■□□□□ 0.27
NUP88-210ENST00000574867 RAB10P61026 200 aa16.71■□□□□ 0.27
NUP88-210ENST00000574867 BMPR2Q13873 1038 aa16.71■□□□□ 0.27
NUP88-210ENST00000574867 C14orf28Q4W4Y0 310 aa16.71■□□□□ 0.27
NUP88-210ENST00000574867 MROH9Q5TGP6 573 aa16.71■□□□□ 0.27
NUP88-210ENST00000574867 NEK10Q6ZWH5 1172 aa16.71■□□□□ 0.27
NUP88-210ENST00000574867 MAPK15Q8TD08 544 aa16.71■□□□□ 0.27
NUP88-210ENST00000574867 RHBDD1Q8TEB9 315 aa16.71■□□□□ 0.27
NUP88-210ENST00000574867 SLC37A2Q8TED4 501 aa16.71■□□□□ 0.27
NUP88-210ENST00000574867 MTBPQ96DY7 904 aa16.71■□□□□ 0.27
NUP88-210ENST00000574867 POT1Q9NUX5 634 aa16.71■□□□□ 0.27
NUP88-210ENST00000574867 HEBP2Q9Y5Z4 205 aa16.71■□□□□ 0.27
NUP88-210ENST00000574867 ARID1BQ8NFD5 2236 aaPredicted RBP16.7■□□□□ 0.26
NUP88-210ENST00000574867 IQANK1A0A1B0GTG1 560 aa16.7■□□□□ 0.26
NUP88-210ENST00000574867 CDH16O75309 829 aa16.7■□□□□ 0.26
NUP88-210ENST00000574867 ZNF37AP17032 561 aaPredicted RBP16.7■□□□□ 0.26
NUP88-210ENST00000574867 PLA2G5P39877 138 aa16.7■□□□□ 0.26
NUP88-210ENST00000574867 SERPINB8P50452 374 aa16.7■□□□□ 0.26
NUP88-210ENST00000574867 PROX2Q3B8N5 592 aa16.7■□□□□ 0.26
NUP88-210ENST00000574867 PAQR3Q6TCH7 311 aa16.7■□□□□ 0.26
NUP88-210ENST00000574867 CCDC91Q7Z6B0 441 aa16.7■□□□□ 0.26
NUP88-210ENST00000574867 SLC9B2Q86UD5 537 aa16.7■□□□□ 0.26
NUP88-210ENST00000574867 VRK3Q8IV63 474 aa16.7■□□□□ 0.26
NUP88-210ENST00000574867 CEP97Q8IW35 865 aa16.7■□□□□ 0.26
NUP88-210ENST00000574867 SLC35F3Q8IY50 421 aa16.7■□□□□ 0.26
NUP88-210ENST00000574867 CPNE9Q8IYJ1 553 aa16.7■□□□□ 0.26
NUP88-210ENST00000574867 APOLD1Q96LR9 279 aa16.7■□□□□ 0.26
NUP88-210ENST00000574867 C12orf66Q96MD2 445 aa16.7■□□□□ 0.26
NUP88-210ENST00000574867 SYTL2Q9HCH5 934 aa16.7■□□□□ 0.26
NUP88-210ENST00000574867 SCHIP1Q9P0W5 487 aaPredicted RBP16.7■□□□□ 0.26
NUP88-210ENST00000574867 PLAAQ9Y263 795 aa16.7■□□□□ 0.26
NUP88-210ENST00000574867 WDR87Q6ZQQ6 2873 aa16.7■□□□□ 0.26
NUP88-210ENST00000574867 HMX2A2RU54 273 aa16.69■□□□□ 0.26
NUP88-210ENST00000574867 SNRPAP09012 282 aaKnown RBP16.69■□□□□ 0.26
NUP88-210ENST00000574867 MTHFD1P11586 935 aaKnown RBP16.69■□□□□ 0.26
NUP88-210ENST00000574867 H2AFXP16104 143 aaPredicted RBP16.69■□□□□ 0.26
NUP88-210ENST00000574867 XRCC1P18887 633 aaPredicted RBP16.69■□□□□ 0.26
NUP88-210ENST00000574867 CRABP2P29373 138 aa16.69■□□□□ 0.26
NUP88-210ENST00000574867 FASLGP48023 281 aa16.69■□□□□ 0.26
NUP88-210ENST00000574867 DNAJC3Q13217 504 aa16.69■□□□□ 0.26
NUP88-210ENST00000574867 CLCA4Q14CN2 919 aa16.69■□□□□ 0.26
NUP88-210ENST00000574867 NR0B2Q15466 257 aa16.69■□□□□ 0.26
NUP88-210ENST00000574867 RPE65Q16518 533 aa16.69■□□□□ 0.26
NUP88-210ENST00000574867 ACSBG2Q5FVE4 666 aa16.69■□□□□ 0.26
NUP88-210ENST00000574867 TRIM48Q8IWZ4 208 aa16.69■□□□□ 0.26
NUP88-210ENST00000574867 RIBC1Q8N443 379 aaPredicted RBP16.69■□□□□ 0.26
NUP88-210ENST00000574867 SPDYE1Q8NFV5 336 aaPredicted RBP16.69■□□□□ 0.26
NUP88-210ENST00000574867 OR6C4Q8NGE1 309 aa16.69■□□□□ 0.26
NUP88-210ENST00000574867 BAHD1Q8TBE0 780 aaPredicted RBP16.69■□□□□ 0.26
NUP88-210ENST00000574867 ISL2Q96A47 359 aa16.69■□□□□ 0.26
NUP88-210ENST00000574867 CXorf40BQ96DE9 158 aa16.69■□□□□ 0.26
NUP88-210ENST00000574867 ROPN1BQ9BZX4 212 aaPredicted RBP16.69■□□□□ 0.26
NUP88-210ENST00000574867 CAB39LQ9H9S4 337 aa16.69■□□□□ 0.26
NUP88-210ENST00000574867 ROPN1Q9HAT0 212 aaPredicted RBP16.69■□□□□ 0.26
NUP88-210ENST00000574867 GPAMQ9HCL2 828 aa16.69■□□□□ 0.26
NUP88-210ENST00000574867 IMP3Q9NV31 184 aaKnown RBP16.69■□□□□ 0.26
NUP88-210ENST00000574867 FTSJ1Q9UET6 329 aa16.69■□□□□ 0.26
NUP88-210ENST00000574867 OR52A4PA6NMU1 304 aa16.69■□□□□ 0.26
NUP88-210ENST00000574867 SH3BP5O60239 455 aa16.69■□□□□ 0.26
NUP88-210ENST00000574867 RPN2P04844 631 aa16.69■□□□□ 0.26
NUP88-210ENST00000574867 MPC1LP0DKB6 136 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms