RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 TUFMP49411 452 aaKnown RBP6.1□□□□□ -1.43
VPS53-212ENST00000572259 CDH15P55291 814 aa6.1□□□□□ -1.43
VPS53-212ENST00000572259 NOMO3P69849 1222 aa6.1□□□□□ -1.43
VPS53-212ENST00000572259 CYP24A1Q07973 514 aa6.1□□□□□ -1.43
VPS53-212ENST00000572259 NPRL3Q12980 569 aa6.1□□□□□ -1.43
VPS53-212ENST00000572259 GPR17Q13304 367 aa6.1□□□□□ -1.43
VPS53-212ENST00000572259 PNOCQ13519 176 aa6.1□□□□□ -1.43
VPS53-212ENST00000572259 SNTB1Q13884 538 aaKnown RBP6.1□□□□□ -1.43
VPS53-212ENST00000572259 TUBB2AQ13885 445 aa6.1□□□□□ -1.43
VPS53-212ENST00000572259 PRKD1Q15139 912 aaPredicted RBP6.1□□□□□ -1.43
VPS53-212ENST00000572259 CCDC40Q4G0X9 1142 aa6.1□□□□□ -1.43
VPS53-212ENST00000572259 BOLA3Q53S33 107 aa6.1□□□□□ -1.43
VPS53-212ENST00000572259 CBWD5Q5RIA9 395 aa6.1□□□□□ -1.43
VPS53-212ENST00000572259 LCE4AQ5TA78 99 aa6.1□□□□□ -1.43
VPS53-212ENST00000572259 CYP4A22Q5TCH4 519 aa6.1□□□□□ -1.43
VPS53-212ENST00000572259 ZNF658Q5TYW1 1059 aaPredicted RBP6.1□□□□□ -1.43
VPS53-212ENST00000572259 FCRL6Q6DN72 434 aa6.1□□□□□ -1.43
VPS53-212ENST00000572259 CD300LGQ6UXG3 332 aa6.1□□□□□ -1.43
VPS53-212ENST00000572259 ANGPTL8Q6UXH0 198 aa6.1□□□□□ -1.43
VPS53-212ENST00000572259 INTS8Q75QN2 995 aaKnown RBP6.1□□□□□ -1.43
VPS53-212ENST00000572259 ADGRG6Q86SQ4 1221 aa6.1□□□□□ -1.43
VPS53-212ENST00000572259 CBWD2Q8IUF1 395 aa6.1□□□□□ -1.43
VPS53-212ENST00000572259 LEMD2Q8NC56 503 aa6.1□□□□□ -1.43
VPS53-212ENST00000572259 KIAA0895Q8NCT3 520 aa6.1□□□□□ -1.43
VPS53-212ENST00000572259 ENGASEQ8NFI3 743 aa6.1□□□□□ -1.43
VPS53-212ENST00000572259 C2orf15Q8WU43 125 aaKnown RBP6.1□□□□□ -1.43
VPS53-212ENST00000572259 CCDC127Q96BQ5 260 aa6.1□□□□□ -1.43
VPS53-212ENST00000572259 ELP4Q96EB1 424 aa6.1□□□□□ -1.43
VPS53-212ENST00000572259 HPDLQ96IR7 371 aa6.1□□□□□ -1.43
VPS53-212ENST00000572259 MMS19Q96T76 1030 aa6.1□□□□□ -1.43
VPS53-212ENST00000572259 TUBB2BQ9BVA1 445 aa6.1□□□□□ -1.43
VPS53-212ENST00000572259 FGFBP2Q9BYJ0 223 aa6.1□□□□□ -1.43
VPS53-212ENST00000572259 IMPG2Q9BZV3 1241 aa6.1□□□□□ -1.43
VPS53-212ENST00000572259 MS4A7Q9GZW8 240 aaPredicted RBP6.1□□□□□ -1.43
VPS53-212ENST00000572259 GOLPH3LQ9H4A5 285 aa6.1□□□□□ -1.43
VPS53-212ENST00000572259 POMKQ9H5K3 350 aa6.1□□□□□ -1.43
VPS53-212ENST00000572259 WDR6Q9NNW5 1121 aaKnown RBP6.1□□□□□ -1.43
VPS53-212ENST00000572259 PCDHB16Q9NRJ7 776 aa6.1□□□□□ -1.43
VPS53-212ENST00000572259 RLIMQ9NVW2 624 aa6.1□□□□□ -1.43
VPS53-212ENST00000572259 HSFX1Q9UBD0 423 aa6.1□□□□□ -1.43
VPS53-212ENST00000572259 DKK4Q9UBT3 224 aa6.1□□□□□ -1.43
VPS53-212ENST00000572259 LEF1Q9UJU2 399 aaPredicted RBP6.1□□□□□ -1.43
VPS53-212ENST00000572259 BAG5Q9UL15 447 aa6.1□□□□□ -1.43
VPS53-212ENST00000572259 TRAF3IP3Q9Y228 551 aa6.1□□□□□ -1.43
VPS53-212ENST00000572259 CHKBQ9Y259 395 aa6.1□□□□□ -1.43
VPS53-212ENST00000572259 WDR37Q9Y2I8 494 aa6.1□□□□□ -1.43
VPS53-212ENST00000572259 ZDBF2Q9HCK1 2354 aa6.09□□□□□ -1.43
VPS53-212ENST00000572259 A0A0G2JPF8 293 aa6.09□□□□□ -1.43
VPS53-212ENST00000572259 WDR27A2RRH5 827 aa6.09□□□□□ -1.43
VPS53-212ENST00000572259 C16orf96A6NNT2 1141 aa6.09□□□□□ -1.43
VPS53-212ENST00000572259 A8MZ25 164 aa6.09□□□□□ -1.43
VPS53-212ENST00000572259 KCNJ18B7U540 433 aa6.09□□□□□ -1.43
VPS53-212ENST00000572259 LOC730098B7Z3J9 87 aa6.09□□□□□ -1.43
VPS53-212ENST00000572259 GPR89AB7ZAQ6 455 aa6.09□□□□□ -1.43
VPS53-212ENST00000572259 HNRNPCL3B7ZW38 293 aa6.09□□□□□ -1.43
VPS53-212ENST00000572259 CTDSP2O14595 271 aa6.09□□□□□ -1.43
VPS53-212ENST00000572259 CCL16O15467 120 aa6.09□□□□□ -1.43
VPS53-212ENST00000572259 SLC25A17O43808 307 aa6.09□□□□□ -1.43
VPS53-212ENST00000572259 RFPL2O75678 378 aa6.09□□□□□ -1.43
VPS53-212ENST00000572259 RPP40O75818 363 aaKnown RBP6.09□□□□□ -1.43
VPS53-212ENST00000572259 AGFG2O95081 481 aa6.09□□□□□ -1.43
VPS53-212ENST00000572259 FGFR1OPO95684 399 aaKnown RBP6.09□□□□□ -1.43
VPS53-212ENST00000572259 FGF19O95750 216 aa6.09□□□□□ -1.43
VPS53-212ENST00000572259 GRPP07492 148 aa6.09□□□□□ -1.43
VPS53-212ENST00000572259 WEE2P0C1S8 567 aa6.09□□□□□ -1.43
VPS53-212ENST00000572259 GPR89BP0CG08 455 aa6.09□□□□□ -1.43
VPS53-212ENST00000572259 HNRNPCL4P0DMR1 293 aa6.09□□□□□ -1.43
VPS53-212ENST00000572259 EPB41P11171 864 aaKnown RBP6.09□□□□□ -1.43
VPS53-212ENST00000572259 TMEM11P17152 192 aa6.09□□□□□ -1.43
VPS53-212ENST00000572259 SLC6A2P23975 617 aa6.09□□□□□ -1.43
VPS53-212ENST00000572259 NR2F2P24468 414 aa6.09□□□□□ -1.43
VPS53-212ENST00000572259 PRKCHP24723 683 aa6.09□□□□□ -1.43
VPS53-212ENST00000572259 SLC6A4P31645 630 aa6.09□□□□□ -1.43
VPS53-212ENST00000572259 ADRA1BP35368 520 aa6.09□□□□□ -1.43
VPS53-212ENST00000572259 SLC15A1P46059 708 aa6.09□□□□□ -1.43
VPS53-212ENST00000572259 SELENOPP49908 381 aa6.09□□□□□ -1.43
VPS53-212ENST00000572259 UCP3P55916 312 aa6.09□□□□□ -1.43
VPS53-212ENST00000572259 TNNC1P63316 161 aa6.09□□□□□ -1.43
VPS53-212ENST00000572259 COG7P83436 770 aa6.09□□□□□ -1.43
VPS53-212ENST00000572259 FKBP3Q00688 224 aaKnown RBP6.09□□□□□ -1.43
VPS53-212ENST00000572259 NHLH2Q02577 135 aa6.09□□□□□ -1.43
VPS53-212ENST00000572259 LRRC63Q05C16 580 aa6.09□□□□□ -1.43
VPS53-212ENST00000572259 ENPEPQ07075 957 aa6.09□□□□□ -1.43
VPS53-212ENST00000572259 SF3A3Q12874 501 aaKnown RBP eCLIP6.09□□□□□ -1.43
VPS53-212ENST00000572259 KCNJ12Q14500 433 aa6.09□□□□□ -1.43
VPS53-212ENST00000572259 VEPH1Q14D04 833 aa6.09□□□□□ -1.43
VPS53-212ENST00000572259 PPP1R7Q15435 360 aa6.09□□□□□ -1.43
VPS53-212ENST00000572259 CSRP2Q16527 193 aa6.09□□□□□ -1.43
VPS53-212ENST00000572259 MYLK3Q32MK0 819 aa6.09□□□□□ -1.43
VPS53-212ENST00000572259 EDRF1Q3B7T1 1238 aa6.09□□□□□ -1.43
VPS53-212ENST00000572259 TBRG1Q3YBR2 411 aa6.09□□□□□ -1.43
VPS53-212ENST00000572259 ZNF766Q5HY98 468 aa6.09□□□□□ -1.43
VPS53-212ENST00000572259 ETFRF1Q6IPR1 90 aa6.09□□□□□ -1.43
VPS53-212ENST00000572259 TTI2Q6NXR4 508 aa6.09□□□□□ -1.43
VPS53-212ENST00000572259 Q6ZRM9 215 aa6.09□□□□□ -1.43
VPS53-212ENST00000572259 TRAPPC11Q7Z392 1133 aa6.09□□□□□ -1.43
VPS53-212ENST00000572259 ITIH5Q86UX2 942 aa6.09□□□□□ -1.43
VPS53-212ENST00000572259 EFCAB13Q8IY85 973 aa6.09□□□□□ -1.43
VPS53-212ENST00000572259 SIX6OS1Q8N1H7 587 aa6.09□□□□□ -1.43
VPS53-212ENST00000572259 SPPL2BQ8TCT7 592 aa6.09□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms