RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 TRIM38O00635 465 aa20.18■□□□□ 0.82
VPS53-210ENST00000571456 ERVK-10P10266 1014 aa20.18■□□□□ 0.82
VPS53-210ENST00000571456 CKMT2P17540 419 aa20.18■□□□□ 0.82
VPS53-210ENST00000571456 ACP1P24666 158 aa20.18■□□□□ 0.82
VPS53-210ENST00000571456 SLC1A2P43004 574 aa20.18■□□□□ 0.82
VPS53-210ENST00000571456 NAB1Q13506 487 aa20.18■□□□□ 0.82
VPS53-210ENST00000571456 RTP5Q14D33 572 aa20.18■□□□□ 0.82
VPS53-210ENST00000571456 TEDDM1Q5T9Z0 273 aa20.18■□□□□ 0.82
VPS53-210ENST00000571456 C17orf82Q86X59 251 aaPredicted RBP20.18■□□□□ 0.82
VPS53-210ENST00000571456 FGF11Q92914 225 aa20.18■□□□□ 0.82
VPS53-210ENST00000571456 NRSN2Q9GZP1 204 aa20.18■□□□□ 0.82
VPS53-210ENST00000571456 OSGEPL1Q9H4B0 414 aa20.18■□□□□ 0.82
VPS53-210ENST00000571456 PLAC1Q9HBJ0 212 aa20.18■□□□□ 0.82
VPS53-210ENST00000571456 KLHL42Q9P2K6 505 aa20.18■□□□□ 0.82
VPS53-210ENST00000571456 NFU1Q9UMS0 254 aa20.18■□□□□ 0.82
VPS53-210ENST00000571456 KCNK6Q9Y257 313 aa20.18■□□□□ 0.82
VPS53-210ENST00000571456 PCYT1BQ9Y5K3 369 aaPredicted RBP20.18■□□□□ 0.82
VPS53-210ENST00000571456 A6NCN8 305 aa20.17■□□□□ 0.82
VPS53-210ENST00000571456 OR1I1O60431 355 aa20.17■□□□□ 0.82
VPS53-210ENST00000571456 WISP1O95388 367 aa20.17■□□□□ 0.82
VPS53-210ENST00000571456 GP1BAP07359 652 aa20.17■□□□□ 0.82
VPS53-210ENST00000571456 CELA2BP08218 269 aaPredicted RBP20.17■□□□□ 0.82
VPS53-210ENST00000571456 PKMP14618 531 aaKnown RBP20.17■□□□□ 0.82
VPS53-210ENST00000571456 PNLIPP16233 465 aa20.17■□□□□ 0.82
VPS53-210ENST00000571456 CD151P48509 253 aa20.17■□□□□ 0.82
VPS53-210ENST00000571456 EIF3BP55884 814 aaKnown RBP20.17■□□□□ 0.82
VPS53-210ENST00000571456 DAB2P98082 770 aa20.17■□□□□ 0.82
VPS53-210ENST00000571456 SRSF1Q07955 248 aaKnown RBP eCLIP20.17■□□□□ 0.827e-9■■□□□ 13.7
VPS53-210ENST00000571456 CTBP1Q13363 440 aa20.17■□□□□ 0.82
VPS53-210ENST00000571456 TMED2Q15363 201 aa20.17■□□□□ 0.82
VPS53-210ENST00000571456 C14orf28Q4W4Y0 310 aa20.17■□□□□ 0.82
VPS53-210ENST00000571456 LDB1Q86U70 411 aaPredicted RBP20.17■□□□□ 0.82
VPS53-210ENST00000571456 RBM12BQ8IXT5 1001 aaKnown RBP20.17■□□□□ 0.82
VPS53-210ENST00000571456 LRRN4CLQ8ND94 238 aa20.17■□□□□ 0.82
VPS53-210ENST00000571456 ASZ1Q8WWH4 475 aa20.17■□□□□ 0.82
VPS53-210ENST00000571456 SH3KBP1Q96B97 665 aa20.17■□□□□ 0.82
VPS53-210ENST00000571456 C9orf72Q96LT7 481 aa20.17■□□□□ 0.82
VPS53-210ENST00000571456 LRRC4CQ9HCJ2 640 aa20.17■□□□□ 0.82
VPS53-210ENST00000571456 SPATS2LQ9NUQ6 558 aaKnown RBP20.17■□□□□ 0.82
VPS53-210ENST00000571456 SLC23A2Q9UGH3 650 aa20.17■□□□□ 0.82
VPS53-210ENST00000571456 DNAJC16Q9Y2G8 782 aa20.17■□□□□ 0.82
VPS53-210ENST00000571456 ST14Q9Y5Y6 855 aa20.17■□□□□ 0.82
VPS53-210ENST00000571456 TCRBV9S1A1TA0A576 114 aa20.16■□□□□ 0.82
VPS53-210ENST00000571456 EME2A4GXA9 379 aaPredicted RBP20.16■□□□□ 0.82
VPS53-210ENST00000571456 NUDT21O43809 227 aaKnown RBP20.16■□□□□ 0.82
VPS53-210ENST00000571456 APOA4P06727 396 aa20.16■□□□□ 0.82
VPS53-210ENST00000571456 GLB1P16278 677 aa20.16■□□□□ 0.82
VPS53-210ENST00000571456 CD9P21926 228 aa20.16■□□□□ 0.82
VPS53-210ENST00000571456 SSTR1P30872 391 aa20.16■□□□□ 0.82
VPS53-210ENST00000571456 FASLGP48023 281 aa20.16■□□□□ 0.82
VPS53-210ENST00000571456 RHDQ02161 417 aa20.16■□□□□ 0.82
VPS53-210ENST00000571456 PLA2G4EQ3MJ16 856 aa20.16■□□□□ 0.82
VPS53-210ENST00000571456 IYDQ6PHW0 289 aa20.16■□□□□ 0.82
VPS53-210ENST00000571456 SLC9B2Q86UD5 537 aa20.16■□□□□ 0.82
VPS53-210ENST00000571456 DENND6AQ8IWF6 608 aa20.16■□□□□ 0.82
VPS53-210ENST00000571456 SFRP1Q8N474 314 aa20.16■□□□□ 0.82
VPS53-210ENST00000571456 WDR48Q8TAF3 677 aa20.16■□□□□ 0.82
VPS53-210ENST00000571456 MAPK15Q8TD08 544 aa20.16■□□□□ 0.82
VPS53-210ENST00000571456 KCNJ9Q92806 393 aa20.16■□□□□ 0.82
VPS53-210ENST00000571456 BIRC8Q96P09 236 aa20.16■□□□□ 0.82
VPS53-210ENST00000571456 COG4Q9H9E3 785 aa20.16■□□□□ 0.82
VPS53-210ENST00000571456 SARS2Q9NP81 518 aaKnown RBP20.16■□□□□ 0.82
VPS53-210ENST00000571456 LATS2Q9NRM7 1088 aa20.16■□□□□ 0.82
VPS53-210ENST00000571456 TXNDC16Q9P2K2 825 aa20.16■□□□□ 0.82
VPS53-210ENST00000571456 TBC1D29Q9UFV1 150 aa20.16■□□□□ 0.82
VPS53-210ENST00000571456 PADI4Q9UM07 663 aa20.16■□□□□ 0.82
VPS53-210ENST00000571456 PLEKHM1Q9Y4G2 1056 aa20.16■□□□□ 0.82
VPS53-210ENST00000571456 HEBP2Q9Y5Z4 205 aa20.16■□□□□ 0.82
VPS53-210ENST00000571456 PRSS21Q9Y6M0 314 aa20.16■□□□□ 0.82
VPS53-210ENST00000571456 PDZK1P1A8MUH7 402 aa20.15■□□□□ 0.82
VPS53-210ENST00000571456 B4DGG1 531 aa20.15■□□□□ 0.82
VPS53-210ENST00000571456 NOBOXO60393 691 aa20.15■□□□□ 0.82
VPS53-210ENST00000571456 SLC35G4P0C7Q5 338 aa20.15■□□□□ 0.82
VPS53-210ENST00000571456 XRCC1P18887 633 aaPredicted RBP20.15■□□□□ 0.82
VPS53-210ENST00000571456 CLDN6P56747 220 aa20.15■□□□□ 0.82
VPS53-210ENST00000571456 TARDBPQ13148 414 aaKnown RBP eCLIP20.15■□□□□ 0.82
VPS53-210ENST00000571456 BIRC2Q13490 618 aa20.15■□□□□ 0.82
VPS53-210ENST00000571456 UGT3A1Q6NUS8 523 aa20.15■□□□□ 0.82
VPS53-210ENST00000571456 TRMT10BQ6PF06 316 aaKnown RBP20.15■□□□□ 0.82
VPS53-210ENST00000571456 TRMT10CQ7L0Y3 403 aaKnown RBP20.15■□□□□ 0.82
VPS53-210ENST00000571456 SPACA3Q8IXA5 215 aa20.15■□□□□ 0.82
VPS53-210ENST00000571456 SLC35F3Q8IY50 421 aa20.15■□□□□ 0.82
VPS53-210ENST00000571456 CFAP206Q8IYR0 622 aa20.15■□□□□ 0.82
VPS53-210ENST00000571456 NAGSQ8N159 534 aa20.15■□□□□ 0.82
VPS53-210ENST00000571456 ZFPM2Q8WW38 1151 aa20.15■□□□□ 0.82
VPS53-210ENST00000571456 ELMO1Q92556 727 aa20.15■□□□□ 0.82
VPS53-210ENST00000571456 TMEM159Q96B96 161 aa20.15■□□□□ 0.82
VPS53-210ENST00000571456 FUT8Q9BYC5 575 aa20.15■□□□□ 0.82
VPS53-210ENST00000571456 IL1RAPL1Q9NZN1 696 aa20.15■□□□□ 0.82
VPS53-210ENST00000571456 CRYL1Q9Y2S2 319 aa20.15■□□□□ 0.82
VPS53-210ENST00000571456 UBR5O95071 2799 aaPredicted RBP20.14■□□□□ 0.82
VPS53-210ENST00000571456 FAM159BA6NKW6 160 aa20.14■□□□□ 0.81
VPS53-210ENST00000571456 E5RI56 91 aa20.14■□□□□ 0.81
VPS53-210ENST00000571456 NDUFS1P28331 727 aa20.14■□□□□ 0.81
VPS53-210ENST00000571456 ATP5DP30049 168 aa20.14■□□□□ 0.81
VPS53-210ENST00000571456 FMO4P31512 558 aa20.14■□□□□ 0.81
VPS53-210ENST00000571456 SKIV2L2P42285 1042 aaKnown RBP20.14■□□□□ 0.81
VPS53-210ENST00000571456 GPX6P59796 221 aa20.14■□□□□ 0.81
VPS53-210ENST00000571456 E2F1Q01094 437 aa20.14■□□□□ 0.81
VPS53-210ENST00000571456 NFE2L1Q14494 772 aa20.14■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms