RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 ST6GAL1P15907 406 aa15.69■□□□□ 0.1
CLK3-223ENST00000568488 HLA-DPA1P20036 260 aa15.69■□□□□ 0.1
CLK3-223ENST00000568488 CCNCP24863 283 aa15.69■□□□□ 0.1
CLK3-223ENST00000568488 CTSCP53634 463 aa15.69■□□□□ 0.1
CLK3-223ENST00000568488 DMPKQ09013 629 aa15.69■□□□□ 0.1
CLK3-223ENST00000568488 GSE1Q14687 1217 aa15.69■□□□□ 0.1
CLK3-223ENST00000568488 PRKD1Q15139 912 aaPredicted RBP15.69■□□□□ 0.1
CLK3-223ENST00000568488 TLR1Q15399 786 aa15.69■□□□□ 0.1
CLK3-223ENST00000568488 IFI16Q16666 785 aaKnown RBP15.69■□□□□ 0.1
CLK3-223ENST00000568488 TXNRD3NBQ6F5E7 133 aa15.69■□□□□ 0.1
CLK3-223ENST00000568488 PPP1R2P3Q6NXS1 205 aa15.69■□□□□ 0.1
CLK3-223ENST00000568488 TMEM151BQ8IW70 566 aa15.69■□□□□ 0.1
CLK3-223ENST00000568488 OR2Y1Q8NGV0 311 aa15.69■□□□□ 0.1
CLK3-223ENST00000568488 ZFPM2Q8WW38 1151 aa15.69■□□□□ 0.1
CLK3-223ENST00000568488 AGAP3Q96P47 875 aa15.69■□□□□ 0.1
CLK3-223ENST00000568488 EPS8L2Q9H6S3 715 aa15.69■□□□□ 0.1
CLK3-223ENST00000568488 MAGEE1Q9HCI5 957 aa15.69■□□□□ 0.1
CLK3-223ENST00000568488 NFKBIL1Q9UBC1 381 aaPredicted RBP15.69■□□□□ 0.1
CLK3-223ENST00000568488 FAM8A1Q9UBU6 413 aa15.69■□□□□ 0.1
CLK3-223ENST00000568488 SH3BGRL2Q9UJC5 107 aa15.69■□□□□ 0.1
CLK3-223ENST00000568488 POMT2Q9UKY4 750 aa15.69■□□□□ 0.1
CLK3-223ENST00000568488 CDYLQ9Y232 598 aa15.69■□□□□ 0.1
CLK3-223ENST00000568488 NAV3Q8IVL0 2385 aa15.69■□□□□ 0.1
CLK3-223ENST00000568488 CCDC88CQ9P219 2028 aa15.68■□□□□ 0.1
CLK3-223ENST00000568488 OR2AG2A6NM03 316 aa15.68■□□□□ 0.1
CLK3-223ENST00000568488 CCDC172P0C7W6 258 aa15.68■□□□□ 0.1
CLK3-223ENST00000568488 CAPN3P20807 821 aa15.68■□□□□ 0.1
CLK3-223ENST00000568488 PRDX3P30048 256 aaKnown RBP15.68■□□□□ 0.1
CLK3-223ENST00000568488 DCDP81605 110 aaKnown RBP15.68■□□□□ 0.1
CLK3-223ENST00000568488 KRT31Q15323 416 aa15.68■□□□□ 0.1
CLK3-223ENST00000568488 ZFYVE27Q5T4F4 411 aa15.68■□□□□ 0.1
CLK3-223ENST00000568488 PRAMEF13Q5VWM6 474 aa15.68■□□□□ 0.1
CLK3-223ENST00000568488 METRNLQ641Q3 311 aa15.68■□□□□ 0.1
CLK3-223ENST00000568488 IGFL2Q6UWQ7 119 aa15.68■□□□□ 0.1
CLK3-223ENST00000568488 GFRALQ6UXV0 394 aa15.68■□□□□ 0.1
CLK3-223ENST00000568488 LINC00696Q6ZRV3 163 aa15.68■□□□□ 0.1
CLK3-223ENST00000568488 RASGEF1AQ8N9B8 481 aa15.68■□□□□ 0.1
CLK3-223ENST00000568488 CATSPER1Q8NEC5 780 aa15.68■□□□□ 0.1
CLK3-223ENST00000568488 SPDYE1Q8NFV5 336 aaPredicted RBP15.68■□□□□ 0.1
CLK3-223ENST00000568488 OR1N1Q8NGS0 311 aa15.68■□□□□ 0.1
CLK3-223ENST00000568488 TEKT4Q8WW24 435 aa15.68■□□□□ 0.1
CLK3-223ENST00000568488 HDAC11Q96DB2 347 aa15.68■□□□□ 0.1
CLK3-223ENST00000568488 KIR3DX1Q9H7L2 352 aa15.68■□□□□ 0.1
CLK3-223ENST00000568488 A0A1B0GTL3 188 aa15.67■□□□□ 0.1
CLK3-223ENST00000568488 FTLP02792 175 aaPredicted RBP15.67■□□□□ 0.1
CLK3-223ENST00000568488 MSL3P1P0C860 447 aa15.67■□□□□ 0.1
CLK3-223ENST00000568488 PVRP15151 417 aa15.67■□□□□ 0.1
CLK3-223ENST00000568488 FERP16591 822 aa15.67■□□□□ 0.1
CLK3-223ENST00000568488 ASIC2Q16515 512 aa15.67■□□□□ 0.1
CLK3-223ENST00000568488 PCSK7Q16549 785 aa15.67■□□□□ 0.1
CLK3-223ENST00000568488 FAM182AQ5T1J6 154 aa15.67■□□□□ 0.1
CLK3-223ENST00000568488 CDHR3Q6ZTQ4 885 aa15.67■□□□□ 0.1
CLK3-223ENST00000568488 CCNYQ8ND76 341 aa15.67■□□□□ 0.1
CLK3-223ENST00000568488 TSGA13Q96PP4 275 aa15.67■□□□□ 0.1
CLK3-223ENST00000568488 DEF6Q9H4E7 631 aa15.67■□□□□ 0.1
CLK3-223ENST00000568488 SLC6A20Q9NP91 592 aa15.67■□□□□ 0.1
CLK3-223ENST00000568488 FBXL4Q9UKA2 621 aa15.67■□□□□ 0.1
CLK3-223ENST00000568488 DNMT3AQ9Y6K1 912 aaPredicted RBP15.67■□□□□ 0.1
CLK3-223ENST00000568488 SCINQ9Y6U3 715 aa15.67■□□□□ 0.1
CLK3-223ENST00000568488 COLEC10Q9Y6Z7 277 aa15.67■□□□□ 0.1
CLK3-223ENST00000568488 DNHD1Q96M86 4753 aa15.67■□□□□ 0.1
CLK3-223ENST00000568488 NIPBLQ6KC79 2804 aaeCLIP15.66■□□□□ 0.1
CLK3-223ENST00000568488 PCDH17O14917 1159 aa15.66■□□□□ 0.1
CLK3-223ENST00000568488 AURKAO14965 403 aa15.66■□□□□ 0.1
CLK3-223ENST00000568488 KCNN4O15554 427 aa15.66■□□□□ 0.1
CLK3-223ENST00000568488 UGT1A9O60656 530 aa15.66■□□□□ 0.1
CLK3-223ENST00000568488 CNOT3O75175 753 aaKnown RBP15.66■□□□□ 0.1
CLK3-223ENST00000568488 OR2B3O76000 313 aa15.66■□□□□ 0.1
CLK3-223ENST00000568488 POLBP06746 335 aa15.66■□□□□ 0.1
CLK3-223ENST00000568488 UMODP07911 640 aa15.66■□□□□ 0.1
CLK3-223ENST00000568488 CD48P09326 243 aa15.66■□□□□ 0.1
CLK3-223ENST00000568488 UGT1A6P19224 532 aa15.66■□□□□ 0.1
CLK3-223ENST00000568488 UGT1A1P22309 533 aa15.66■□□□□ 0.1
CLK3-223ENST00000568488 UGT1A4P22310 534 aa15.66■□□□□ 0.1
CLK3-223ENST00000568488 SSR1P43307 286 aaKnown RBP15.66■□□□□ 0.1
CLK3-223ENST00000568488 PAFAH1B3Q15102 231 aaKnown RBP15.66■□□□□ 0.1
CLK3-223ENST00000568488 NCBP2-AS2Q69YL0 99 aa15.66■□□□□ 0.1
CLK3-223ENST00000568488 MTFR2Q6P444 385 aa15.66■□□□□ 0.1
CLK3-223ENST00000568488 TMEM207Q6UWW9 146 aa15.66■□□□□ 0.1
CLK3-223ENST00000568488 RPTNQ6XPR3 784 aa15.66■□□□□ 0.1
CLK3-223ENST00000568488 BEND7Q8N7W2 519 aaPredicted RBP15.66■□□□□ 0.1
CLK3-223ENST00000568488 LCN9Q8WX39 176 aa15.66■□□□□ 0.1
CLK3-223ENST00000568488 AP1M1Q9BXS5 423 aa15.66■□□□□ 0.1
CLK3-223ENST00000568488 ZCCHC2Q9C0B9 1178 aaKnown RBP15.66■□□□□ 0.1
CLK3-223ENST00000568488 SPRTNQ9H040 489 aaPredicted RBP15.66■□□□□ 0.1
CLK3-223ENST00000568488 SRMSQ9H3Y6 488 aa15.66■□□□□ 0.1
CLK3-223ENST00000568488 UGT1A7Q9HAW7 530 aa15.66■□□□□ 0.1
CLK3-223ENST00000568488 UGT1A10Q9HAW8 530 aa15.66■□□□□ 0.1
CLK3-223ENST00000568488 UGT1A8Q9HAW9 530 aa15.66■□□□□ 0.1
CLK3-223ENST00000568488 TXLNGQ9NUQ3 528 aa15.66■□□□□ 0.1
CLK3-223ENST00000568488 DHCR7Q9UBM7 475 aaKnown RBP15.66■□□□□ 0.1
CLK3-223ENST00000568488 CDC23Q9UJX2 597 aa15.66■□□□□ 0.1
CLK3-223ENST00000568488 AP1M2Q9Y6Q5 423 aa15.66■□□□□ 0.1
CLK3-223ENST00000568488 KCNK1O00180 336 aa15.65■□□□□ 0.1
CLK3-223ENST00000568488 MATN2O00339 956 aa15.65■□□□□ 0.1
CLK3-223ENST00000568488 MT-CYBP00156 380 aaPredicted RBP15.65■□□□□ 0.1
CLK3-223ENST00000568488 SLC35G4P0C7Q5 338 aa15.65■□□□□ 0.1
CLK3-223ENST00000568488 NDUFS1P28331 727 aa15.65■□□□□ 0.1
CLK3-223ENST00000568488 LDLRAP1Q5SW96 308 aa15.65■□□□□ 0.1
CLK3-223ENST00000568488 FNBP1LQ5T0N5 605 aa15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms