RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 PRSS16Q9NQE7 514 aa9.08□□□□□ -0.96
VPS39-205ENST00000562258 INTS7Q9NVH2 962 aaKnown RBP9.08□□□□□ -0.96
VPS39-205ENST00000562258 GALPQ9UBC7 116 aa9.08□□□□□ -0.96
VPS39-205ENST00000562258 FAF1Q9UNN5 650 aaPredicted RBP9.08□□□□□ -0.96
VPS39-205ENST00000562258 TRAF6Q9Y4K3 522 aa9.08□□□□□ -0.96
VPS39-205ENST00000562258 MTCH2Q9Y6C9 303 aa9.08□□□□□ -0.96
VPS39-205ENST00000562258 OR52A4PA6NMU1 304 aa9.08□□□□□ -0.96
VPS39-205ENST00000562258 PI15O43692 258 aa9.08□□□□□ -0.96
VPS39-205ENST00000562258 ZNF682O95780 498 aa9.08□□□□□ -0.96
VPS39-205ENST00000562258 CAPN1P07384 714 aa9.08□□□□□ -0.96
VPS39-205ENST00000562258 LBPP18428 481 aa9.08□□□□□ -0.96
VPS39-205ENST00000562258 PRKCHP24723 683 aa9.08□□□□□ -0.96
VPS39-205ENST00000562258 ACSL1P33121 698 aa9.08□□□□□ -0.96
VPS39-205ENST00000562258 CSTF2P33240 577 aaKnown RBP eCLIP9.08□□□□□ -0.96
VPS39-205ENST00000562258 HNRNPH2P55795 449 aaKnown RBP9.08□□□□□ -0.96
VPS39-205ENST00000562258 MSLNQ13421 630 aaPredicted RBP9.08□□□□□ -0.96
VPS39-205ENST00000562258 KRT72Q14CN4 511 aa9.08□□□□□ -0.96
VPS39-205ENST00000562258 TMEM164Q5U3C3 297 aa9.08□□□□□ -0.96
VPS39-205ENST00000562258 LYSMD4Q5XG99 296 aa9.08□□□□□ -0.96
VPS39-205ENST00000562258 CD300LGQ6UXG3 332 aa9.08□□□□□ -0.96
VPS39-205ENST00000562258 RIPOR1Q6ZS17 1223 aa9.08□□□□□ -0.96
VPS39-205ENST00000562258 HSD11B1LQ7Z5J1 315 aa9.08□□□□□ -0.96
VPS39-205ENST00000562258 GKN2Q86XP6 184 aa9.08□□□□□ -0.96
VPS39-205ENST00000562258 RASGRP3Q8IV61 690 aa9.08□□□□□ -0.96
VPS39-205ENST00000562258 MYEOVQ96EZ4 313 aa9.08□□□□□ -0.96
VPS39-205ENST00000562258 CEP44Q9C0F1 390 aa9.08□□□□□ -0.96
VPS39-205ENST00000562258 EFCAB1Q9HAE3 211 aa9.08□□□□□ -0.96
VPS39-205ENST00000562258 EQTNQ9NQ60 294 aa9.08□□□□□ -0.96
VPS39-205ENST00000562258 GPN3Q9UHW5 284 aaPredicted RBP9.08□□□□□ -0.96
VPS39-205ENST00000562258 TEX264Q9Y6I9 313 aa9.08□□□□□ -0.96
VPS39-205ENST00000562258 COL11A1P12107 1806 aaPredicted RBP9.08□□□□□ -0.96
VPS39-205ENST00000562258 CHURC1-FNTBB4DL54 471 aa9.08□□□□□ -0.96
VPS39-205ENST00000562258 CACNG3O60359 315 aa9.08□□□□□ -0.96
VPS39-205ENST00000562258 TBX10O75333 385 aa9.08□□□□□ -0.96
VPS39-205ENST00000562258 TGFB1P01137 390 aa9.08□□□□□ -0.96
VPS39-205ENST00000562258 SLC35G6P0C7Q6 338 aa9.08□□□□□ -0.96
VPS39-205ENST00000562258 EEF1B2P24534 225 aaKnown RBP9.08□□□□□ -0.96
VPS39-205ENST00000562258 GGT5P36269 586 aa9.08□□□□□ -0.96
VPS39-205ENST00000562258 FNTBP49356 437 aa9.08□□□□□ -0.96
VPS39-205ENST00000562258 MAPK10P53779 464 aa9.08□□□□□ -0.96
VPS39-205ENST00000562258 RAB8AP61006 207 aa9.08□□□□□ -0.96
VPS39-205ENST00000562258 SKOR1P84550 965 aa9.08□□□□□ -0.96
VPS39-205ENST00000562258 ELOCQ15369 112 aa9.08□□□□□ -0.96
VPS39-205ENST00000562258 LRRC23Q53EV4 343 aaPredicted RBP9.08□□□□□ -0.96
VPS39-205ENST00000562258 CUZD1Q86UP6 607 aa9.08□□□□□ -0.96
VPS39-205ENST00000562258 ZC3HC1Q86WB0 502 aaKnown RBP9.08□□□□□ -0.96
VPS39-205ENST00000562258 GATAD2AQ86YP4 633 aa9.08□□□□□ -0.96
VPS39-205ENST00000562258 CILP2Q8IUL8 1156 aa9.08□□□□□ -0.96
VPS39-205ENST00000562258 TMEM132CQ8N3T6 1108 aa9.08□□□□□ -0.96
VPS39-205ENST00000562258 METTL27Q8N6F8 245 aaPredicted RBP9.08□□□□□ -0.96
VPS39-205ENST00000562258 FAM120BQ96EK7 910 aaKnown RBP9.08□□□□□ -0.96
VPS39-205ENST00000562258 GATA5Q9BWX5 397 aaPredicted RBP9.08□□□□□ -0.96
VPS39-205ENST00000562258 RMND5AQ9H871 391 aa9.08□□□□□ -0.96
VPS39-205ENST00000562258 RDH14Q9HBH5 336 aa9.08□□□□□ -0.96
VPS39-205ENST00000562258 MRPS30Q9NP92 439 aaKnown RBP9.08□□□□□ -0.96
VPS39-205ENST00000562258 IL26Q9NPH9 171 aa9.08□□□□□ -0.96
VPS39-205ENST00000562258 INTS10Q9NVR2 710 aaKnown RBP9.08□□□□□ -0.96
VPS39-205ENST00000562258 CAPN8A6NHC0 703 aa9.07□□□□□ -0.96
VPS39-205ENST00000562258 JMJD7P0C870 316 aa9.07□□□□□ -0.96
VPS39-205ENST00000562258 SRFP11831 508 aa9.07□□□□□ -0.96
VPS39-205ENST00000562258 TSHRP16473 764 aa9.07□□□□□ -0.96
VPS39-205ENST00000562258 TCEA1P23193 301 aaKnown RBP9.07□□□□□ -0.96
VPS39-205ENST00000562258 ATP6V1E1P36543 226 aa9.07□□□□□ -0.96
VPS39-205ENST00000562258 GTF2A1P52655 376 aaPredicted RBP9.07□□□□□ -0.96
VPS39-205ENST00000562258 HNRNPKP61978 463 aaKnown RBP eCLIP9.07□□□□□ -0.96
VPS39-205ENST00000562258 ZNF77Q15935 545 aa9.07□□□□□ -0.96
VPS39-205ENST00000562258 PTCHD3Q3KNS1 767 aa9.07□□□□□ -0.96
VPS39-205ENST00000562258 RALGPS1Q5JS13 557 aa9.07□□□□□ -0.96
VPS39-205ENST00000562258 ZC3H14Q6PJT7 736 aaKnown RBP9.07□□□□□ -0.96
VPS39-205ENST00000562258 RANBP10Q6VN20 620 aa9.07□□□□□ -0.96
VPS39-205ENST00000562258 QRFPRQ96P65 431 aa9.07□□□□□ -0.96
VPS39-205ENST00000562258 MCMBPQ9BTE3 642 aa9.07□□□□□ -0.96
VPS39-205ENST00000562258 RSPH9Q9H1X1 276 aaPredicted RBP9.07□□□□□ -0.96
VPS39-205ENST00000562258 MRPL40Q9NQ50 206 aaKnown RBP9.07□□□□□ -0.96
VPS39-205ENST00000562258 COPG2Q9UBF2 871 aa9.07□□□□□ -0.96
VPS39-205ENST00000562258 GPR34Q9UPC5 381 aa9.07□□□□□ -0.96
VPS39-205ENST00000562258 A8MUA0 341 aa9.07□□□□□ -0.96
VPS39-205ENST00000562258 FANCGO15287 622 aa9.07□□□□□ -0.96
VPS39-205ENST00000562258 GPX6P59796 221 aa9.07□□□□□ -0.96
VPS39-205ENST00000562258 MRPS21P82921 87 aaKnown RBP9.07□□□□□ -0.96
VPS39-205ENST00000562258 CLCQ05315 142 aa9.07□□□□□ -0.96
VPS39-205ENST00000562258 CYLC2Q14093 348 aaPredicted RBP9.07□□□□□ -0.96
VPS39-205ENST00000562258 SLC9A5Q14940 896 aa9.07□□□□□ -0.96
VPS39-205ENST00000562258 ACSBG2Q5FVE4 666 aa9.07□□□□□ -0.96
VPS39-205ENST00000562258 LIPIQ6XZB0 460 aa9.07□□□□□ -0.96
VPS39-205ENST00000562258 SNX32Q86XE0 403 aa9.07□□□□□ -0.96
VPS39-205ENST00000562258 CLYBLQ8N0X4 340 aa9.07□□□□□ -0.96
VPS39-205ENST00000562258 TMCO5AQ8N6Q1 288 aa9.07□□□□□ -0.96
VPS39-205ENST00000562258 GPR26Q8NDV2 337 aa9.07□□□□□ -0.96
VPS39-205ENST00000562258 MGME1Q9BQP7 344 aa9.07□□□□□ -0.96
VPS39-205ENST00000562258 ZDHHC18Q9NUE0 388 aa9.07□□□□□ -0.96
VPS39-205ENST00000562258 ZNF446Q9NWS9 450 aa9.07□□□□□ -0.96
VPS39-205ENST00000562258 PLLPQ9Y342 182 aa9.07□□□□□ -0.96
VPS39-205ENST00000562258 PIPSLA2A3N6 862 aa9.07□□□□□ -0.96
VPS39-205ENST00000562258 FCHO1O14526 889 aa9.07□□□□□ -0.96
VPS39-205ENST00000562258 MBTPS2O43462 519 aa9.07□□□□□ -0.96
VPS39-205ENST00000562258 GMFGO60234 142 aa9.07□□□□□ -0.96
VPS39-205ENST00000562258 GUCY1B2O75343 617 aa9.07□□□□□ -0.96
VPS39-205ENST00000562258 TIMP2P16035 220 aa9.07□□□□□ -0.96
VPS39-205ENST00000562258 NEK2P51955 445 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 6.4 ms