RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 LIX1Q8N485 282 aa13.03□□□□□ -0.32
CSPG4P11-201ENST00000560634 DNAJA4Q8WW22 397 aaPredicted RBP13.03□□□□□ -0.32
CSPG4P11-201ENST00000560634 TP53INP1Q96A56 240 aa13.03□□□□□ -0.32
CSPG4P11-201ENST00000560634 ZNF570Q96NI8 536 aa13.03□□□□□ -0.32
CSPG4P11-201ENST00000560634 ACBD6Q9BR61 282 aa13.03□□□□□ -0.32
CSPG4P11-201ENST00000560634 MED11Q9P086 117 aa13.03□□□□□ -0.32
CSPG4P11-201ENST00000560634 ERVW-1Q9UQF0 538 aa13.03□□□□□ -0.32
CSPG4P11-201ENST00000560634 PRAMEF33A0A0G2JMD5 474 aa13.02□□□□□ -0.32
CSPG4P11-201ENST00000560634 PIP5K1BO14986 540 aa13.02□□□□□ -0.32
CSPG4P11-201ENST00000560634 TPD52L2O43399 206 aaKnown RBP13.02□□□□□ -0.32
CSPG4P11-201ENST00000560634 PI15O43692 258 aa13.02□□□□□ -0.32
CSPG4P11-201ENST00000560634 PRAMEF10O60809 474 aa13.02□□□□□ -0.32
CSPG4P11-201ENST00000560634 MATN4O95460 622 aa13.02□□□□□ -0.32
CSPG4P11-201ENST00000560634 RLN2P04090 185 aa13.02□□□□□ -0.32
CSPG4P11-201ENST00000560634 EEFSECP57772 596 aaKnown RBP13.02□□□□□ -0.32
CSPG4P11-201ENST00000560634 TATDN1Q6P1N9 297 aa13.02□□□□□ -0.32
CSPG4P11-201ENST00000560634 PAOXQ6QHF9 649 aa13.02□□□□□ -0.32
CSPG4P11-201ENST00000560634 PAMR1Q6UXH9 720 aa13.02□□□□□ -0.32
CSPG4P11-201ENST00000560634 ZMIZ2Q8NF64 920 aa13.02□□□□□ -0.32
CSPG4P11-201ENST00000560634 METTL21AQ8WXB1 218 aa13.02□□□□□ -0.32
CSPG4P11-201ENST00000560634 PIGKQ92643 395 aa13.02□□□□□ -0.32
CSPG4P11-201ENST00000560634 RBM18Q96H35 190 aaKnown RBP13.02□□□□□ -0.32
CSPG4P11-201ENST00000560634 LRRC3Q9BY71 257 aa13.02□□□□□ -0.32
CSPG4P11-201ENST00000560634 PHF24Q9UPV7 400 aa13.02□□□□□ -0.32
CSPG4P11-201ENST00000560634 TESMINQ9Y4I5 508 aa13.02□□□□□ -0.32
CSPG4P11-201ENST00000560634 NFATC1O95644 943 aa13.02□□□□□ -0.32
CSPG4P11-201ENST00000560634 MT-ND1P03886 318 aa13.02□□□□□ -0.32
CSPG4P11-201ENST00000560634 PTGIRP43119 386 aa13.02□□□□□ -0.32
CSPG4P11-201ENST00000560634 SLC5A3P53794 718 aa13.02□□□□□ -0.32
CSPG4P11-201ENST00000560634 ANKRD22Q5VYY1 191 aa13.02□□□□□ -0.32
CSPG4P11-201ENST00000560634 NATD1Q8N6N6 113 aa13.02□□□□□ -0.32
CSPG4P11-201ENST00000560634 ZBED6CLQ96FA7 236 aaPredicted RBP13.02□□□□□ -0.32
CSPG4P11-201ENST00000560634 COQ10BQ9H8M1 238 aa13.02□□□□□ -0.32
CSPG4P11-201ENST00000560634 MAP10Q9P2G4 905 aa13.02□□□□□ -0.32
CSPG4P11-201ENST00000560634 MEMO1Q9Y316 297 aa13.02□□□□□ -0.32
CSPG4P11-201ENST00000560634 PRAMEF12O95522 483 aa13.02□□□□□ -0.33
CSPG4P11-201ENST00000560634 CYB5AP00167 134 aa13.02□□□□□ -0.33
CSPG4P11-201ENST00000560634 APODP05090 189 aa13.02□□□□□ -0.33
CSPG4P11-201ENST00000560634 HMGN1P05114 100 aa13.02□□□□□ -0.33
CSPG4P11-201ENST00000560634 NSG1P42857 185 aa13.02□□□□□ -0.33
CSPG4P11-201ENST00000560634 GRK6P43250 576 aa13.02□□□□□ -0.33
CSPG4P11-201ENST00000560634 RORCP51449 518 aa13.02□□□□□ -0.33
CSPG4P11-201ENST00000560634 TAS2R39P59534 338 aa13.02□□□□□ -0.33
CSPG4P11-201ENST00000560634 SCRN3Q0VDG4 424 aa13.02□□□□□ -0.33
CSPG4P11-201ENST00000560634 TMEM214Q6NUQ4 689 aaKnown RBP13.02□□□□□ -0.33
CSPG4P11-201ENST00000560634 SLC24A5Q71RS6 500 aa13.02□□□□□ -0.33
CSPG4P11-201ENST00000560634 MAB21L3Q8N8X9 362 aa13.02□□□□□ -0.33
CSPG4P11-201ENST00000560634 OR5T3Q8NGG3 340 aa13.02□□□□□ -0.33
CSPG4P11-201ENST00000560634 C15orf40Q8WUR7 153 aa13.02□□□□□ -0.33
CSPG4P11-201ENST00000560634 GPR20Q99678 358 aa13.02□□□□□ -0.33
CSPG4P11-201ENST00000560634 TCF7L1Q9HCS4 588 aa13.02□□□□□ -0.33
CSPG4P11-201ENST00000560634 DIP2BQ9P265 1576 aa13.02□□□□□ -0.33
CSPG4P11-201ENST00000560634 ANXA2P2A6NMY6 339 aa13.02□□□□□ -0.33
CSPG4P11-201ENST00000560634 CST3P01034 146 aaPredicted RBP13.02□□□□□ -0.33
CSPG4P11-201ENST00000560634 ANXA2P07355 339 aaKnown RBP13.02□□□□□ -0.33
CSPG4P11-201ENST00000560634 ADAM17P78536 824 aa13.02□□□□□ -0.33
CSPG4P11-201ENST00000560634 PLEKHG6Q3KR16 790 aa13.02□□□□□ -0.33
CSPG4P11-201ENST00000560634 EIPR1Q53HC9 387 aa13.02□□□□□ -0.33
CSPG4P11-201ENST00000560634 PRAMEF19Q5SWL8 479 aa13.02□□□□□ -0.33
CSPG4P11-201ENST00000560634 DEFB132Q7Z7B7 95 aa13.02□□□□□ -0.33
CSPG4P11-201ENST00000560634 GALNT13Q8IUC8 556 aa13.02□□□□□ -0.33
CSPG4P11-201ENST00000560634 C1orf127Q8N9H9 656 aa13.02□□□□□ -0.33
CSPG4P11-201ENST00000560634 UPF1Q92900 1129 aaKnown RBP eCLIP13.02□□□□□ -0.33
CSPG4P11-201ENST00000560634 AZIN2Q96A70 460 aa13.02□□□□□ -0.33
CSPG4P11-201ENST00000560634 ERLEC1Q96DZ1 483 aa13.02□□□□□ -0.33
CSPG4P11-201ENST00000560634 PIWIL1Q96J94 861 aaKnown RBP13.02□□□□□ -0.33
CSPG4P11-201ENST00000560634 CEP295NLQ96MC4 621 aa13.02□□□□□ -0.33
CSPG4P11-201ENST00000560634 FRMD6Q96NE9 622 aa13.02□□□□□ -0.33
CSPG4P11-201ENST00000560634 EHD1Q9H4M9 534 aa13.02□□□□□ -0.33
CSPG4P11-201ENST00000560634 TFB2MQ9H5Q4 396 aaKnown RBP13.02□□□□□ -0.33
CSPG4P11-201ENST00000560634 MAGEE1Q9HCI5 957 aa13.02□□□□□ -0.33
CSPG4P11-201ENST00000560634 PCDHGA3Q9Y5H0 932 aa13.02□□□□□ -0.33
CSPG4P11-201ENST00000560634 C2CD4BA6NLJ0 364 aa13.01□□□□□ -0.33
CSPG4P11-201ENST00000560634 GJB1P08034 283 aa13.01□□□□□ -0.33
CSPG4P11-201ENST00000560634 PLEKHG4Q58EX7 1191 aa13.01□□□□□ -0.33
CSPG4P11-201ENST00000560634 SERPINA9Q86WD7 417 aa13.01□□□□□ -0.33
CSPG4P11-201ENST00000560634 CARD8Q9Y2G2 431 aa13.01□□□□□ -0.33
CSPG4P11-201ENST00000560634 VWDEQ8N2E2 1590 aa13.01□□□□□ -0.33
CSPG4P11-201ENST00000560634 MID1O15344 667 aa13.01□□□□□ -0.33
CSPG4P11-201ENST00000560634 PGLSO95336 258 aa13.01□□□□□ -0.33
CSPG4P11-201ENST00000560634 AQP4P55087 323 aa13.01□□□□□ -0.33
CSPG4P11-201ENST00000560634 CCL23P55773 120 aa13.01□□□□□ -0.33
CSPG4P11-201ENST00000560634 MVKQ03426 396 aa13.01□□□□□ -0.33
CSPG4P11-201ENST00000560634 CYP1B1Q16678 543 aa13.01□□□□□ -0.33
CSPG4P11-201ENST00000560634 IQCCQ4KMZ1 466 aa13.01□□□□□ -0.33
CSPG4P11-201ENST00000560634 RBM48Q5RL73 367 aaKnown RBP13.01□□□□□ -0.33
CSPG4P11-201ENST00000560634 SLC30A6Q6NXT4 461 aa13.01□□□□□ -0.33
CSPG4P11-201ENST00000560634 GALNT15Q8N3T1 639 aa13.01□□□□□ -0.33
CSPG4P11-201ENST00000560634 CPA6Q8N4T0 437 aa13.01□□□□□ -0.33
CSPG4P11-201ENST00000560634 GTPBP3Q969Y2 492 aaKnown RBP13.01□□□□□ -0.33
CSPG4P11-201ENST00000560634 POLR2J2Q9GZM3 115 aaKnown RBP13.01□□□□□ -0.33
CSPG4P11-201ENST00000560634 C14orf105Q9NVL8 296 aa13.01□□□□□ -0.33
CSPG4P11-201ENST00000560634 DCLK1O15075 740 aa13.01□□□□□ -0.33
CSPG4P11-201ENST00000560634 KMOO15229 486 aa13.01□□□□□ -0.33
CSPG4P11-201ENST00000560634 GOT2P00505 430 aaKnown RBP13.01□□□□□ -0.33
CSPG4P11-201ENST00000560634 DBIP07108 87 aaKnown RBP13.01□□□□□ -0.33
CSPG4P11-201ENST00000560634 ERVK-8P63133 956 aa13.01□□□□□ -0.33
CSPG4P11-201ENST00000560634 MXD1Q05195 221 aa13.01□□□□□ -0.33
CSPG4P11-201ENST00000560634 RASGEF1BQ0VAM2 473 aa13.01□□□□□ -0.33
CSPG4P11-201ENST00000560634 ILF3Q12906 894 aaKnown RBP eCLIP13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms