RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 POLR3BQ9NW08 1133 aaPredicted RBP11.16□□□□□ -0.62
LDLR-208ENST00000558518 MIOSQ9NXC5 875 aa11.16□□□□□ -0.62
LDLR-208ENST00000558518 PDP1Q9P0J1 537 aaPredicted RBP11.16□□□□□ -0.62
LDLR-208ENST00000558518 ANK1P16157 1881 aa11.16□□□□□ -0.62
LDLR-208ENST00000558518 PNMA8CA0A1B0GUJ8 204 aa11.16□□□□□ -0.62
LDLR-208ENST00000558518 VIPP01282 170 aa11.16□□□□□ -0.62
LDLR-208ENST00000558518 CHRNA1P02708 482 aa11.16□□□□□ -0.62
LDLR-208ENST00000558518 THP07101 528 aa11.16□□□□□ -0.62
LDLR-208ENST00000558518 SMPD1P17405 629 aa11.16□□□□□ -0.62
LDLR-208ENST00000558518 AKT1P31749 480 aa11.16□□□□□ -0.62
LDLR-208ENST00000558518 RCAN2Q14206 197 aa11.16□□□□□ -0.62
LDLR-208ENST00000558518 IHHQ14623 411 aa11.16□□□□□ -0.62
LDLR-208ENST00000558518 CYP27C1Q4G0S4 372 aa11.16□□□□□ -0.62
LDLR-208ENST00000558518 ZNF648Q5T619 568 aaPredicted RBP11.16□□□□□ -0.62
LDLR-208ENST00000558518 KANK2Q63ZY3 851 aa11.16□□□□□ -0.62
LDLR-208ENST00000558518 DESI1Q6ICB0 168 aa11.16□□□□□ -0.62
LDLR-208ENST00000558518 CES5AQ6NT32 575 aa11.16□□□□□ -0.62
LDLR-208ENST00000558518 CELF2-AS1Q8N7Q2 184 aa11.16□□□□□ -0.62
LDLR-208ENST00000558518 PIK3C3Q8NEB9 887 aa11.16□□□□□ -0.62
LDLR-208ENST00000558518 OR6K2Q8NGY2 324 aa11.16□□□□□ -0.62
LDLR-208ENST00000558518 SLC25A51Q9H1U9 297 aa11.16□□□□□ -0.62
LDLR-208ENST00000558518 PHIPQ8WWQ0 1821 aa11.16□□□□□ -0.62
LDLR-208ENST00000558518 ELOVL7A1L3X0 281 aa11.15□□□□□ -0.62
LDLR-208ENST00000558518 IQCA1LA6NCM1 817 aa11.15□□□□□ -0.62
LDLR-208ENST00000558518 PDZK1P1A8MUH7 402 aa11.15□□□□□ -0.62
LDLR-208ENST00000558518 PTGESO14684 152 aa11.15□□□□□ -0.62
LDLR-208ENST00000558518 SSX4O60224 188 aa11.15□□□□□ -0.62
LDLR-208ENST00000558518 GRK4P32298 578 aa11.15□□□□□ -0.62
LDLR-208ENST00000558518 ERVK-8P63133 956 aa11.15□□□□□ -0.62
LDLR-208ENST00000558518 ABRAXAS2Q15018 415 aa11.15□□□□□ -0.62
LDLR-208ENST00000558518 CTF1Q16619 201 aa11.15□□□□□ -0.62
LDLR-208ENST00000558518 METTL23Q86XA0 190 aa11.15□□□□□ -0.62
LDLR-208ENST00000558518 ATL1Q8WXF7 558 aa11.15□□□□□ -0.62
LDLR-208ENST00000558518 CITED4Q96RK1 184 aa11.15□□□□□ -0.62
LDLR-208ENST00000558518 MBOAT4Q96T53 435 aa11.15□□□□□ -0.62
LDLR-208ENST00000558518 DOK1Q99704 481 aa11.15□□□□□ -0.62
LDLR-208ENST00000558518 TNKS2Q9H2K2 1166 aa11.15□□□□□ -0.62
LDLR-208ENST00000558518 NMUR1Q9HB89 426 aa11.15□□□□□ -0.62
LDLR-208ENST00000558518 SCHIP1Q9P0W5 487 aaPredicted RBP11.15□□□□□ -0.62
LDLR-208ENST00000558518 PRG3Q9Y2Y8 225 aaPredicted RBP11.15□□□□□ -0.62
LDLR-208ENST00000558518 PCDHB14Q9Y5E9 798 aa11.15□□□□□ -0.62
LDLR-208ENST00000558518 A0A096LPI6 279 aa11.15□□□□□ -0.62
LDLR-208ENST00000558518 CPNE6O95741 557 aa11.15□□□□□ -0.62
LDLR-208ENST00000558518 STAU1O95793 577 aaKnown RBP11.15□□□□□ -0.62
LDLR-208ENST00000558518 UMPSP11172 480 aa11.15□□□□□ -0.62
LDLR-208ENST00000558518 POU1F1P28069 291 aa11.15□□□□□ -0.62
LDLR-208ENST00000558518 C21orf33P30042 268 aaPredicted RBP11.15□□□□□ -0.62
LDLR-208ENST00000558518 EEFSECP57772 596 aaKnown RBP11.15□□□□□ -0.62
LDLR-208ENST00000558518 ERVPABLB-1P60509 514 aa11.15□□□□□ -0.62
LDLR-208ENST00000558518 RACK1P63244 317 aaKnown RBP11.15□□□□□ -0.62
LDLR-208ENST00000558518 CDK5R2Q13319 367 aa11.15□□□□□ -0.62
LDLR-208ENST00000558518 UAP1L1Q3KQV9 507 aa11.15□□□□□ -0.62
LDLR-208ENST00000558518 RBM48Q5RL73 367 aaKnown RBP11.15□□□□□ -0.62
LDLR-208ENST00000558518 GTF2IRD2BQ6EKJ0 949 aa11.15□□□□□ -0.62
LDLR-208ENST00000558518 RGMBQ6NW40 437 aa11.15□□□□□ -0.62
LDLR-208ENST00000558518 VTCN1Q7Z7D3 282 aa11.15□□□□□ -0.62
LDLR-208ENST00000558518 GTF2IRD2Q86UP8 949 aa11.15□□□□□ -0.62
LDLR-208ENST00000558518 ADHFE1Q8IWW8 467 aa11.15□□□□□ -0.62
LDLR-208ENST00000558518 HDAC2Q92769 488 aaKnown RBP11.15□□□□□ -0.62
LDLR-208ENST00000558518 REXO5Q96IC2 774 aaKnown RBP11.15□□□□□ -0.62
LDLR-208ENST00000558518 RBM4BQ9BQ04 359 aaKnown RBP11.15□□□□□ -0.62
LDLR-208ENST00000558518 TUBA1CQ9BQE3 449 aa11.15□□□□□ -0.62
LDLR-208ENST00000558518 RBM4Q9BWF3 364 aaKnown RBP11.15□□□□□ -0.62
LDLR-208ENST00000558518 VTA1Q9NP79 307 aa11.15□□□□□ -0.62
LDLR-208ENST00000558518 GIMAP4Q9NUV9 329 aa11.15□□□□□ -0.62
LDLR-208ENST00000558518 ERVK13-1Q9NX77 482 aa11.15□□□□□ -0.62
LDLR-208ENST00000558518 DNAJB9Q9UBS3 223 aa11.15□□□□□ -0.62
LDLR-208ENST00000558518 CDH9Q9ULB4 789 aa11.15□□□□□ -0.62
LDLR-208ENST00000558518 LY75O60449 1722 aa11.15□□□□□ -0.62
LDLR-208ENST00000558518 IRAK2O43187 625 aa11.15□□□□□ -0.63
LDLR-208ENST00000558518 AIREO43918 545 aa11.15□□□□□ -0.63
LDLR-208ENST00000558518 UGT2B11O75310 529 aa11.15□□□□□ -0.63
LDLR-208ENST00000558518 SLC25A27O95847 323 aa11.15□□□□□ -0.63
LDLR-208ENST00000558518 CD40LGP29965 261 aa11.15□□□□□ -0.63
LDLR-208ENST00000558518 ADRA1AP35348 466 aa11.15□□□□□ -0.63
LDLR-208ENST00000558518 ILF2Q12905 390 aaKnown RBP11.15□□□□□ -0.63
LDLR-208ENST00000558518 CLCA4Q14CN2 919 aa11.15□□□□□ -0.63
LDLR-208ENST00000558518 C10orf120Q5SQS8 335 aa11.15□□□□□ -0.63
LDLR-208ENST00000558518 MBOAT1Q6ZNC8 495 aa11.15□□□□□ -0.63
LDLR-208ENST00000558518 C11orf74Q86VG3 221 aa11.15□□□□□ -0.63
LDLR-208ENST00000558518 LIX1Q8N485 282 aa11.15□□□□□ -0.63
LDLR-208ENST00000558518 PDPRQ8NCN5 879 aa11.15□□□□□ -0.63
LDLR-208ENST00000558518 NETO1Q8TDF5 533 aa11.15□□□□□ -0.63
LDLR-208ENST00000558518 L3HYPDHQ96EM0 354 aa11.15□□□□□ -0.63
LDLR-208ENST00000558518 SPATA17Q96L03 361 aa11.15□□□□□ -0.63
LDLR-208ENST00000558518 Q96MT0 163 aa11.15□□□□□ -0.63
LDLR-208ENST00000558518 KATNAL1Q9BW62 490 aa11.15□□□□□ -0.63
LDLR-208ENST00000558518 NFKBIZQ9BYH8 718 aa11.15□□□□□ -0.63
LDLR-208ENST00000558518 DSN1Q9H410 356 aa11.15□□□□□ -0.63
LDLR-208ENST00000558518 IPPKQ9H8X2 491 aa11.15□□□□□ -0.63
LDLR-208ENST00000558518 GPN2Q9H9Y4 310 aaPredicted RBP11.15□□□□□ -0.63
LDLR-208ENST00000558518 SYTL2Q9HCH5 934 aa11.15□□□□□ -0.63
LDLR-208ENST00000558518 ZNF225Q9UK10 706 aa11.15□□□□□ -0.63
LDLR-208ENST00000558518 PMF1-BGLAPU3KQ54 211 aa11.15□□□□□ -0.63
LDLR-208ENST00000558518 FAM234BA2RU67 622 aa11.14□□□□□ -0.63
LDLR-208ENST00000558518 H0YAE9 185 aa11.14□□□□□ -0.63
LDLR-208ENST00000558518 SLC7A4O43246 635 aa11.14□□□□□ -0.63
LDLR-208ENST00000558518 RAMP2O60895 175 aa11.14□□□□□ -0.63
LDLR-208ENST00000558518 DDNO94850 711 aaPredicted RBP11.14□□□□□ -0.63
LDLR-208ENST00000558518 MLYCDO95822 493 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms