RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 GPR156Q8NFN8 814 aa12.54□□□□□ -0.4
SHMT2-227ENST00000557269 EPS8L3Q8TE67 593 aaKnown RBP12.54□□□□□ -0.4
SHMT2-227ENST00000557269 RHBDD1Q8TEB9 315 aa12.54□□□□□ -0.4
SHMT2-227ENST00000557269 SLC37A2Q8TED4 501 aa12.54□□□□□ -0.4
SHMT2-227ENST00000557269 ASZ1Q8WWH4 475 aa12.54□□□□□ -0.4
SHMT2-227ENST00000557269 INPP5DQ92835 1189 aa12.54□□□□□ -0.4
SHMT2-227ENST00000557269 APOLD1Q96LR9 279 aa12.54□□□□□ -0.4
SHMT2-227ENST00000557269 WASH6PQ9NQA3 447 aa12.54□□□□□ -0.4
SHMT2-227ENST00000557269 TAS2R13Q9NYV9 303 aa12.54□□□□□ -0.4
SHMT2-227ENST00000557269 ZNF180Q9UJW8 692 aa12.54□□□□□ -0.4
SHMT2-227ENST00000557269 NFS1Q9Y697 457 aa12.54□□□□□ -0.4
SHMT2-227ENST00000557269 ZFC3H1O60293 1989 aaKnown RBP12.54□□□□□ -0.4
SHMT2-227ENST00000557269 ZNF292O60281 2723 aa12.53□□□□□ -0.4
SHMT2-227ENST00000557269 ARID1BQ8NFD5 2236 aaPredicted RBP12.53□□□□□ -0.4
SHMT2-227ENST00000557269 SMIM23A6NLE4 172 aa12.53□□□□□ -0.4
SHMT2-227ENST00000557269 FOXO6A8MYZ6 492 aa12.53□□□□□ -0.4
SHMT2-227ENST00000557269 KPNA5O15131 536 aa12.53□□□□□ -0.4
SHMT2-227ENST00000557269 PHGDHO43175 533 aaKnown RBP12.53□□□□□ -0.4
SHMT2-227ENST00000557269 TSPAN12O95859 305 aa12.53□□□□□ -0.4
SHMT2-227ENST00000557269 H2AFXP16104 143 aaPredicted RBP12.53□□□□□ -0.4
SHMT2-227ENST00000557269 PLA2G5P39877 138 aa12.53□□□□□ -0.4
SHMT2-227ENST00000557269 SLC19A1P41440 591 aa12.53□□□□□ -0.4
SHMT2-227ENST00000557269 GRK6P43250 576 aa12.53□□□□□ -0.4
SHMT2-227ENST00000557269 CSRP3P50461 194 aa12.53□□□□□ -0.4
SHMT2-227ENST00000557269 POU4F1Q01851 419 aa12.53□□□□□ -0.4
SHMT2-227ENST00000557269 ABRQ12979 859 aa12.53□□□□□ -0.4
SHMT2-227ENST00000557269 RPA4Q13156 261 aa12.53□□□□□ -0.4
SHMT2-227ENST00000557269 USP10Q14694 798 aaKnown RBP12.53□□□□□ -0.4
SHMT2-227ENST00000557269 ZKSCAN8Q15776 578 aaPredicted RBP12.53□□□□□ -0.4
SHMT2-227ENST00000557269 PLEKHS1Q5SXH7 462 aa12.53□□□□□ -0.4
SHMT2-227ENST00000557269 ZCCHC8Q6NZY4 707 aaKnown RBP12.53□□□□□ -0.4
SHMT2-227ENST00000557269 ADGRD1Q6QNK2 874 aa12.53□□□□□ -0.4
SHMT2-227ENST00000557269 CYHR1Q6ZMK1 362 aa12.53□□□□□ -0.4
SHMT2-227ENST00000557269 CMC1Q7Z7K0 106 aa12.53□□□□□ -0.4
SHMT2-227ENST00000557269 PDZD3Q86UT5 571 aa12.53□□□□□ -0.4
SHMT2-227ENST00000557269 CYP4X1Q8N118 509 aa12.53□□□□□ -0.4
SHMT2-227ENST00000557269 ARL14Q8N4G2 192 aa12.53□□□□□ -0.4
SHMT2-227ENST00000557269 ARL10Q8N8L6 244 aa12.53□□□□□ -0.4
SHMT2-227ENST00000557269 FAM181AQ8N9Y4 354 aa12.53□□□□□ -0.4
SHMT2-227ENST00000557269 PHC3Q8NDX5 983 aa12.53□□□□□ -0.4
SHMT2-227ENST00000557269 BAHD1Q8TBE0 780 aaPredicted RBP12.53□□□□□ -0.4
SHMT2-227ENST00000557269 EEF1AKMT1Q8WVE0 214 aa12.53□□□□□ -0.4
SHMT2-227ENST00000557269 ANKRD49Q8WVL7 239 aa12.53□□□□□ -0.4
SHMT2-227ENST00000557269 HNRNPLLQ8WVV9 542 aaKnown RBP12.53□□□□□ -0.4
SHMT2-227ENST00000557269 GLMNQ92990 594 aa12.53□□□□□ -0.4
SHMT2-227ENST00000557269 TMEM159Q96B96 161 aa12.53□□□□□ -0.4
SHMT2-227ENST00000557269 FAM122AQ96E09 287 aa12.53□□□□□ -0.4
SHMT2-227ENST00000557269 NRTNQ99748 197 aa12.53□□□□□ -0.4
SHMT2-227ENST00000557269 DUSP23Q9BVJ7 150 aa12.53□□□□□ -0.4
SHMT2-227ENST00000557269 EURLQ9NYK6 297 aa12.53□□□□□ -0.4
SHMT2-227ENST00000557269 KLHL42Q9P2K6 505 aa12.53□□□□□ -0.4
SHMT2-227ENST00000557269 FETUBQ9UGM5 382 aa12.53□□□□□ -0.4
SHMT2-227ENST00000557269 TRMT6Q9UJA5 497 aaKnown RBP12.53□□□□□ -0.4
SHMT2-227ENST00000557269 IKZF3Q9UKT9 509 aa12.53□□□□□ -0.4
SHMT2-227ENST00000557269 PLAAQ9Y263 795 aa12.53□□□□□ -0.4
SHMT2-227ENST00000557269 ASCC3Q8N3C0 2202 aaKnown RBP12.52□□□□□ -0.41
SHMT2-227ENST00000557269 TM4SF5O14894 197 aa12.52□□□□□ -0.41
SHMT2-227ENST00000557269 CASC3O15234 703 aaKnown RBP12.52□□□□□ -0.41
SHMT2-227ENST00000557269 PPM1DO15297 605 aa12.52□□□□□ -0.41
SHMT2-227ENST00000557269 ERLIN1O75477 346 aa12.52□□□□□ -0.41
SHMT2-227ENST00000557269 ALDOAP04075 364 aaKnown RBP12.52□□□□□ -0.41
SHMT2-227ENST00000557269 SLC35G4P0C7Q5 338 aa12.52□□□□□ -0.41
SHMT2-227ENST00000557269 ALPPL2P10696 532 aa12.52□□□□□ -0.41
SHMT2-227ENST00000557269 MTHFD1P11586 935 aaKnown RBP12.52□□□□□ -0.41
SHMT2-227ENST00000557269 SKIV2L2P42285 1042 aaKnown RBP12.52□□□□□ -0.41
SHMT2-227ENST00000557269 UBE2IP63279 158 aaKnown RBP12.52□□□□□ -0.41
SHMT2-227ENST00000557269 DNAJC3Q13217 504 aa12.52□□□□□ -0.41
SHMT2-227ENST00000557269 PDAP1Q13442 181 aaKnown RBP12.52□□□□□ -0.41
SHMT2-227ENST00000557269 TMED2Q15363 201 aa12.52□□□□□ -0.41
SHMT2-227ENST00000557269 C14orf28Q4W4Y0 310 aa12.52□□□□□ -0.41
SHMT2-227ENST00000557269 PPM1JQ5JR12 505 aa12.52□□□□□ -0.41
SHMT2-227ENST00000557269 PIWIL4Q7Z3Z4 852 aaKnown RBP12.52□□□□□ -0.41
SHMT2-227ENST00000557269 IQCKQ8N0W5 287 aa12.52□□□□□ -0.41
SHMT2-227ENST00000557269 SPATA6LQ8N4H0 392 aa12.52□□□□□ -0.41
SHMT2-227ENST00000557269 NETO1Q8TDF5 533 aa12.52□□□□□ -0.41
SHMT2-227ENST00000557269 CNDP2Q96KP4 475 aaKnown RBP12.52□□□□□ -0.41
SHMT2-227ENST00000557269 C12orf66Q96MD2 445 aa12.52□□□□□ -0.41
SHMT2-227ENST00000557269 IMP3Q9NV31 184 aaKnown RBP12.52□□□□□ -0.41
SHMT2-227ENST00000557269 TBK1Q9UHD2 729 aa12.52□□□□□ -0.41
SHMT2-227ENST00000557269 SLC24A2Q9UI40 661 aa12.52□□□□□ -0.41
SHMT2-227ENST00000557269 IKBKGQ9Y6K9 419 aa12.52□□□□□ -0.41
SHMT2-227ENST00000557269 RNF215Q9Y6U7 377 aa12.52□□□□□ -0.41
SHMT2-227ENST00000557269 RIF1Q5UIP0 2472 aaKnown RBP12.52□□□□□ -0.41
SHMT2-227ENST00000557269 ARHGEF17Q96PE2 2063 aaPredicted RBP12.52□□□□□ -0.41
SHMT2-227ENST00000557269 GVINP1Q7Z2Y8 2422 aa12.51□□□□□ -0.41
SHMT2-227ENST00000557269 KIR2DS5A0A0G2JLQ3 304 aa12.51□□□□□ -0.41
SHMT2-227ENST00000557269 A0A0G2JNG1 304 aa12.51□□□□□ -0.41
SHMT2-227ENST00000557269 KRT87PA6NCN2 255 aa12.51□□□□□ -0.41
SHMT2-227ENST00000557269 TRIM49D1C9J1S8 452 aa12.51□□□□□ -0.41
SHMT2-227ENST00000557269 KIR2DS3K7RE56 304 aa12.51□□□□□ -0.41
SHMT2-227ENST00000557269 TCEA3O75764 348 aa12.51□□□□□ -0.41
SHMT2-227ENST00000557269 MATN4O95460 622 aa12.51□□□□□ -0.41
SHMT2-227ENST00000557269 LDOC1O95751 146 aaPredicted RBP12.51□□□□□ -0.41
SHMT2-227ENST00000557269 SLC35E2BP0CK96 405 aa12.51□□□□□ -0.41
SHMT2-227ENST00000557269 TPBGLP0DKB5 382 aa12.51□□□□□ -0.41
SHMT2-227ENST00000557269 STMN1P16949 149 aa12.51□□□□□ -0.41
SHMT2-227ENST00000557269 ZNF37AP17032 561 aaPredicted RBP12.51□□□□□ -0.41
SHMT2-227ENST00000557269 XRCC1P18887 633 aaPredicted RBP12.51□□□□□ -0.41
SHMT2-227ENST00000557269 ATP5DP30049 168 aa12.51□□□□□ -0.41
SHMT2-227ENST00000557269 HALP42357 657 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms