RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 C14orf28Q4W4Y0 310 aa13.74□□□□□ -0.21
VIPAS39-208ENST00000556412 AGAP9Q5VTM2 703 aa13.74□□□□□ -0.21
VIPAS39-208ENST00000556412 PAQR3Q6TCH7 311 aa13.74□□□□□ -0.21
VIPAS39-208ENST00000556412 ABRAXAS1Q6UWZ7 409 aa13.74□□□□□ -0.21
VIPAS39-208ENST00000556412 CMC1Q7Z7K0 106 aa13.74□□□□□ -0.21
VIPAS39-208ENST00000556412 CEP97Q8IW35 865 aa13.74□□□□□ -0.21
VIPAS39-208ENST00000556412 NETO1Q8TDF5 533 aa13.74□□□□□ -0.21
VIPAS39-208ENST00000556412 EPS8L3Q8TE67 593 aaKnown RBP13.74□□□□□ -0.21
VIPAS39-208ENST00000556412 TSPAN17Q96FV3 270 aa13.74□□□□□ -0.21
VIPAS39-208ENST00000556412 CNDP2Q96KP4 475 aaKnown RBP13.74□□□□□ -0.21
VIPAS39-208ENST00000556412 INSM2Q96T92 566 aaPredicted RBP13.74□□□□□ -0.21
VIPAS39-208ENST00000556412 OR52A5Q9H2C5 316 aa13.74□□□□□ -0.21
VIPAS39-208ENST00000556412 GPAMQ9HCL2 828 aa13.74□□□□□ -0.21
VIPAS39-208ENST00000556412 LATS2Q9NRM7 1088 aa13.74□□□□□ -0.21
VIPAS39-208ENST00000556412 ARGLU1Q9NWB6 273 aaPredicted RBP13.74□□□□□ -0.21
VIPAS39-208ENST00000556412 PSMC3IPQ9P2W1 217 aaPredicted RBP13.74□□□□□ -0.21
VIPAS39-208ENST00000556412 FTSJ1Q9UET6 329 aa13.74□□□□□ -0.21
VIPAS39-208ENST00000556412 CDYLQ9Y232 598 aa13.74□□□□□ -0.21
VIPAS39-208ENST00000556412 PLAAQ9Y263 795 aa13.74□□□□□ -0.21
VIPAS39-208ENST00000556412 UQCRHLA0A096LP55 91 aa13.73□□□□□ -0.21
VIPAS39-208ENST00000556412 CPED1A4D0V7 1026 aa13.73□□□□□ -0.21
VIPAS39-208ENST00000556412 NOBOXO60393 691 aa13.73□□□□□ -0.21
VIPAS39-208ENST00000556412 KRT37O76014 449 aa13.73□□□□□ -0.21
VIPAS39-208ENST00000556412 LDOC1O95751 146 aaPredicted RBP13.73□□□□□ -0.21
VIPAS39-208ENST00000556412 UQCRHP07919 91 aa13.73□□□□□ -0.21
VIPAS39-208ENST00000556412 GCAP28676 217 aa13.73□□□□□ -0.21
VIPAS39-208ENST00000556412 PLA2G5P39877 138 aa13.73□□□□□ -0.21
VIPAS39-208ENST00000556412 RPIAP49247 311 aa13.73□□□□□ -0.21
VIPAS39-208ENST00000556412 NR0B2Q15466 257 aa13.73□□□□□ -0.21
VIPAS39-208ENST00000556412 RPE65Q16518 533 aa13.73□□□□□ -0.21
VIPAS39-208ENST00000556412 WASH2PQ6VEQ5 465 aa13.73□□□□□ -0.21
VIPAS39-208ENST00000556412 DBX2Q6ZNG2 339 aa13.73□□□□□ -0.21
VIPAS39-208ENST00000556412 PDZD3Q86UT5 571 aa13.73□□□□□ -0.21
VIPAS39-208ENST00000556412 SLC22A15Q8IZD6 547 aa13.73□□□□□ -0.21
VIPAS39-208ENST00000556412 LINGO1Q96FE5 620 aa13.73□□□□□ -0.21
VIPAS39-208ENST00000556412 STN1Q9H668 368 aaKnown RBP13.73□□□□□ -0.21
VIPAS39-208ENST00000556412 WASH6PQ9NQA3 447 aa13.73□□□□□ -0.21
VIPAS39-208ENST00000556412 CTNNAL1Q9UBT7 734 aa13.73□□□□□ -0.21
VIPAS39-208ENST00000556412 SLC24A2Q9UI40 661 aa13.73□□□□□ -0.21
VIPAS39-208ENST00000556412 CDV3Q9UKY7 258 aaKnown RBP13.73□□□□□ -0.21
VIPAS39-208ENST00000556412 PCOLCE2Q9UKZ9 415 aa13.73□□□□□ -0.21
VIPAS39-208ENST00000556412 PADI4Q9UM07 663 aa13.73□□□□□ -0.21
VIPAS39-208ENST00000556412 ASF1AQ9Y294 204 aa13.73□□□□□ -0.21
VIPAS39-208ENST00000556412 LAMA1P25391 3075 aa13.73□□□□□ -0.21
VIPAS39-208ENST00000556412 OTOGLQ3ZCN5 2332 aa13.73□□□□□ -0.21
VIPAS39-208ENST00000556412 KIR2DS5A0A0G2JLQ3 304 aa13.72□□□□□ -0.21
VIPAS39-208ENST00000556412 PRAMEF33A0A0G2JMD5 474 aa13.72□□□□□ -0.21
VIPAS39-208ENST00000556412 A0A0G2JNG1 304 aa13.72□□□□□ -0.21
VIPAS39-208ENST00000556412 OR5K4A6NMS3 321 aa13.72□□□□□ -0.21
VIPAS39-208ENST00000556412 KIR2DS3K7RE56 304 aa13.72□□□□□ -0.21
VIPAS39-208ENST00000556412 SLCO2B1O94956 709 aa13.72□□□□□ -0.21
VIPAS39-208ENST00000556412 VIPP01282 170 aa13.72□□□□□ -0.21
VIPAS39-208ENST00000556412 NUDT17P0C025 328 aa13.72□□□□□ -0.21
VIPAS39-208ENST00000556412 PPM1FP49593 454 aaPredicted RBP13.72□□□□□ -0.21
VIPAS39-208ENST00000556412 RGS4P49798 205 aa13.72□□□□□ -0.21
VIPAS39-208ENST00000556412 LIMK1P53667 647 aa13.72□□□□□ -0.21
VIPAS39-208ENST00000556412 RAB10P61026 200 aa13.72□□□□□ -0.21
VIPAS39-208ENST00000556412 HHEXQ03014 270 aa13.72□□□□□ -0.21
VIPAS39-208ENST00000556412 KIR2DS5Q14953 304 aa13.72□□□□□ -0.21
VIPAS39-208ENST00000556412 CCDC157Q569K6 752 aa13.72□□□□□ -0.21
VIPAS39-208ENST00000556412 BEND6Q5SZJ8 279 aaPredicted RBP13.72□□□□□ -0.21
VIPAS39-208ENST00000556412 LGSNQ5TDP6 509 aa13.72□□□□□ -0.21
VIPAS39-208ENST00000556412 OGFOD3Q6PK18 319 aa13.72□□□□□ -0.21
VIPAS39-208ENST00000556412 PIWIL4Q7Z3Z4 852 aaKnown RBP13.72□□□□□ -0.21
VIPAS39-208ENST00000556412 SLC9B2Q86UD5 537 aa13.72□□□□□ -0.21
VIPAS39-208ENST00000556412 ZNF761Q86XN6 746 aaPredicted RBP13.72□□□□□ -0.21
VIPAS39-208ENST00000556412 SFRP1Q8N474 314 aa13.72□□□□□ -0.21
VIPAS39-208ENST00000556412 ARL14Q8N4G2 192 aa13.72□□□□□ -0.21
VIPAS39-208ENST00000556412 PHC3Q8NDX5 983 aa13.72□□□□□ -0.21
VIPAS39-208ENST00000556412 GPR156Q8NFN8 814 aa13.72□□□□□ -0.21
VIPAS39-208ENST00000556412 EEF1AKMT1Q8WVE0 214 aa13.72□□□□□ -0.21
VIPAS39-208ENST00000556412 TFGQ92734 400 aaPredicted RBP13.72□□□□□ -0.21
VIPAS39-208ENST00000556412 FERD3LQ96RJ6 166 aa13.72□□□□□ -0.21
VIPAS39-208ENST00000556412 DHRS4Q9BTZ2 278 aa13.72□□□□□ -0.21
VIPAS39-208ENST00000556412 ZNF624Q9P2J8 865 aaPredicted RBP13.72□□□□□ -0.21
VIPAS39-208ENST00000556412 CPNE7Q9UBL6 633 aa13.72□□□□□ -0.21
VIPAS39-208ENST00000556412 ZNF180Q9UJW8 692 aa13.72□□□□□ -0.21
VIPAS39-208ENST00000556412 HMX2A2RU54 273 aa13.71□□□□□ -0.21
VIPAS39-208ENST00000556412 RHPN2P1A8MT19 583 aa13.71□□□□□ -0.21
VIPAS39-208ENST00000556412 TRIM49D1C9J1S8 452 aa13.71□□□□□ -0.21
VIPAS39-208ENST00000556412 MTHFD1P11586 935 aaKnown RBP13.71□□□□□ -0.21
VIPAS39-208ENST00000556412 CNTFP26441 200 aa13.71□□□□□ -0.21
VIPAS39-208ENST00000556412 SLC19A1P41440 591 aa13.71□□□□□ -0.21
VIPAS39-208ENST00000556412 IL2P60568 153 aa13.71□□□□□ -0.21
VIPAS39-208ENST00000556412 DNAJC3Q13217 504 aa13.71□□□□□ -0.21
VIPAS39-208ENST00000556412 CAPRIN2Q6IMN6 1127 aaKnown RBP13.71□□□□□ -0.21
VIPAS39-208ENST00000556412 ADGRD1Q6QNK2 874 aa13.71□□□□□ -0.21
VIPAS39-208ENST00000556412 MYO1HQ8N1T3 1032 aa13.71□□□□□ -0.21
VIPAS39-208ENST00000556412 DEFB124Q8NES8 71 aa13.71□□□□□ -0.21
VIPAS39-208ENST00000556412 HNRNPLLQ8WVV9 542 aaKnown RBP13.71□□□□□ -0.21
VIPAS39-208ENST00000556412 FOPNLQ96NB1 174 aa13.71□□□□□ -0.21
VIPAS39-208ENST00000556412 UNKQ9C0B0 810 aaKnown RBP13.71□□□□□ -0.21
VIPAS39-208ENST00000556412 SNX15Q9NRS6 342 aa13.71□□□□□ -0.21
VIPAS39-208ENST00000556412 KLHL42Q9P2K6 505 aa13.71□□□□□ -0.21
VIPAS39-208ENST00000556412 FETUBQ9UGM5 382 aa13.71□□□□□ -0.21
VIPAS39-208ENST00000556412 NFS1Q9Y697 457 aa13.71□□□□□ -0.21
VIPAS39-208ENST00000556412 PLXNB3Q9ULL4 1909 aa13.71□□□□□ -0.21
VIPAS39-208ENST00000556412 IQANK1A0A1B0GTG1 560 aa13.71□□□□□ -0.22
VIPAS39-208ENST00000556412 RASGRF2O14827 1237 aa13.71□□□□□ -0.22
VIPAS39-208ENST00000556412 SNRPAP09012 282 aaKnown RBP13.71□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 82.5 ms